Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

19534160 .. 19536145

Gene Structure 1986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGGCGCACGGTGATGATGTGAGACCGAGTCAAAAGCCCAAATTCTCTAATAACGATGATGGCAAAGCAACAGACTATAGCAAATTAGAATGGAAGCCTGAACACCCCAATCGGCCTCTGTGGATTTGTCCCGATGGTCGAGTACTCCTGGAAACTAACTCGGCTTTCTACGAACACGCTCAGGATTTTCTCATTGCCATTGCCGAACCTGTTCGCAGGGCAGAGTTGATCCACGAGTATAACTTGACCCCGGAGTCATTGTGTGCGGCTGCCTCAACTGGTGTCAAAACAGAAACCATTATTTCTGTCTTGAATAAGCTCTCGAAAACCGAGCTCACGAAACAACTCAATGATTTTATTCAGTCTTCTACTGATAACAGCGGCAAAGCGAAGCTGGTCCTCAAGAACAATCGGTACTTTGTGGAATCCACATTGCCGGAGGTACTGAACACATTGCTTGAGGATAAACTTATATCTGAAGCAAAAATTAGTAGTATAACAAATAATGGCAAAGAATTCGAAATTGATCATAACAAGGTTGAAGACATCATGAAACGTTGCTCGCAAGATGGTTTGAACTATCCCATGGTGGAGGAGTACGACTATAGAAACGATAATGTAAACCCCAATGTTGGTATGGAACTAAAGCCCCAAGCACGCGTGACGATACGACCATATCAGCTTAAAAGCTTGAGCACAATGTTTGGGAATGGTAGAGCGAGATCTGGTATAATTGTACTACCTTGCGGCGCAGGAAAATCCCTAGTTGGTGTTTCTGCAGCCTCCACAATAGGAAAGAGCTGCCTTTGTTTAGCAACGAATGGTGTTTCAGTTGATCAGTGGGTCTATCAGTTCAAGTTGTGGTCAACCATTCGAGATGAACAGATTTGTCGTTTCAAATCTGACTGTAAAGAAGAAGCTGCAGAGATGTTAATCCGCCGCAAAAGCAATGCTGCTGGGGTGGTGGTTGTGACTACATATAGCATGCTTGGCTGTGGTGGCAATAGGTCCCAACAGTCTAAAAACATTATTGAGGAAATAAAAAATAGAAAATGGGGGTTGATTCTCATGGATGAGGTTCATGTAACTCCTGCTGAATCGTTTCAAAATGTCATCCGAATCACCAAATCACACTGCAAGCTTGGCCTCACGGCGACGCTCTTGAGAGAAGATGACAAGATATCAGATCTCAACTTCCTCATTGGACCCAAATTATATGAAGCAAACTGGTTGGATTTGGCGAAACGAGGATACATTGCAAATGTGCTCTGTGCTGAAGTAAGGTGTCAGATGACAAAGGAGTTCTTTGCCGAGTATAAGAAAGAAAACTCCTGCGAAAGAAAGCAAGCACTTTATTTGATGAATCCAAACAAGTTTAGGATATGCGAGTATCTTATACAGTTTCATGAGCAGCAGCGCCGTGGTGATAAGATCATAGTCTTTTCCGACAACCTCTTCACCCTCACTGAATATGCCACCAAGCTCAGAAAACCTATGATTTATGGTGCCACCACGCAGGCTGAGACGACAAAAGTTCTAGAAGAGTTCAAAACAAACCCGGATGTAAACACCGTATTCATGTCTAAGGTGGGTGATAACTCCTTGGACATTCCCGAGGCAAATGTGATCATTGAGATTTCATGGCACGGCGGTTCGAGACGACAAGAAGCGCAGCGTCTTGGTCGGATTCTAAGGGCCAAGAAAAGTAAAGAGAAGTACAATGCATTCTTCTATTCCCTTGTGTCATCGGATACACGGGAGATGGAATTTGCAGCTAAAAGGCAGCAGTTTTTGGTCGATCAAGGTTATAGTTATAAGATTGTTACAATCTTGCAATTGCCTAATTTTCCTCCACTTGGATCAGGAGCTTTGAGCTATGACAGTCTTCAAGATCAACGCGCACTACTCAAGAAAGTGTTGAGCTTTAATGAGGCTATAGTTGGGGCCGAAGATCCACTATTAGAAGATGTAGATGGCATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

661

Amino Acids

74.83

Weight (kDa)

7.8

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	40 - 165	6.6e-30	Helicase conserved C-terminal domain
ResIII	PF04851	222 - 387	3e-16	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	413 - 648	1.3e-103	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	462 - 566	8.3e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1815
AasI	GACNNNNNNGTC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	1505
AccII	CGCG	2 cut(s)	660, 1899
AciI	CCGC	6 cut(s)	266, 381, 747, 937, 940, 1650
AclI	AACGTT	1 cut(s)	556
AclWI	GGATC	3 cut(s)	223, 1867, 1946
AcsI	RAATTY	3 cut(s)	41, 515, 1766
AcuI	CTGAAG	2 cut(s)	498, 1296
AfaI	GTAC	6 cut(s)	144, 416, 444, 599, 738, 1718
AfiI	CCNNNNNNNGG	2 cut(s)	632, 1856
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	8 cut(s)	313, 542, 577, 856, 898, 1106, 1549, 1889
AjnI	CCWGG	1 cut(s)	147
Alw21I	GWGCWC	3 cut(s)	336, 698, 1269
Alw26I	GTCTC	3 cut(s)	16, 1517, 1651
AlwI	GGATC	3 cut(s)	223, 1867, 1946
Ama87I	CYCGRG	1 cut(s)	1613
AoxI	GGCC	4 cut(s)	113, 1144, 1695, 1944
ApoI	RAATTY	3 cut(s)	41, 515, 1766
Asp700I	GAANNNNTTC	2 cut(s)	210, 1101
AspLEI	GCGC	5 cut(s)	7, 752, 1419, 1672, 1901
AspS9I	GGNCC	5 cut(s)	397, 1008, 1205, 1695, 1944
AsuC2I	CCSGG	2 cut(s)	251, 1559
AsuHPI	GGTGA	5 cut(s)	23, 1114, 1436, 1450, 1604
AsuII	TTCGAA	1 cut(s)	519
AvaI	CYCGRG	1 cut(s)	1613
AvaII	GGWCC	3 cut(s)	397, 1008, 1205
BanI	GGYRCC	1 cut(s)	1505
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	3 cut(s)	357, 549, 1877
Bbv12I	GWGCWC	3 cut(s)	336, 698, 1269
BccI	CCATC	5 cut(s)	53, 128, 563, 1756, 1967
BceAI	ACGGC	3 cut(s)	1167, 1404, 1663
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	2 cut(s)	1244, 1744
BclI	TGATCA	3 cut(s)	526, 835, 1626
BcnI	CCSGG	2 cut(s)	251, 1559
BcoDI	GTCTC	3 cut(s)	16, 1517, 1651
BfaI	CTAG	2 cut(s)	764, 1538
BfmI	CTRYAG	5 cut(s)	76, 604, 777, 921, 1935
BfoI	RGCGCY	1 cut(s)	1420
BfuI	GTATCC	2 cut(s)	1244, 1744
BglII	AGATCT	2 cut(s)	722, 1186
BmcAI	AGTACT	1 cut(s)	144
Bme1390I	CCNGG	3 cut(s)	149, 251, 1559
Bme18I	GGWCC	3 cut(s)	397, 1008, 1205
BmeT110I	CYCGRG	1 cut(s)	1613
BmgT120I	GGNCC	5 cut(s)	397, 1008, 1205, 1695, 1944
BmiI	GGNNCC	4 cut(s)	1010, 1207, 1507, 1945
BmrFI	CCNGG	3 cut(s)	149, 251, 1559
BpiI	GAAGAC	3 cut(s)	357, 549, 1877
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	5 cut(s)	386, 479, 712, 1183, 1892
BpuMI	CCSGG	2 cut(s)	251, 1559
BsaBI	GATNNNNATC	1 cut(s)	932
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	5 cut(s)	249, 585, 1420, 1602, 1614
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 1856
Bse1I	ACTGG	2 cut(s)	283, 1232
Bse3DI	GCAATG	6 cut(s)	192, 198, 431, 452, 955, 1254
Bse8I	GATNNNNATC	1 cut(s)	932
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	5 cut(s)	249, 585, 1420, 1602, 1614
BseGI	GGATG	3 cut(s)	1078, 1113, 1567
BseJI	GATNNNNATC	1 cut(s)	932
BseLI	CCNNNNNNNGG	2 cut(s)	632, 1856
BseMI	GCAATG	6 cut(s)	192, 198, 431, 452, 955, 1254
BseMII	CTCAG	3 cut(s)	194, 1498, 1512
BseNI	ACTGG	2 cut(s)	283, 1232
BseRI	GAGGAG	1 cut(s)	608
BseYI	CCCAGC	1 cut(s)	956
Bsh1236I	CGCG	2 cut(s)	660, 1899
BshFI	GGCC	4 cut(s)	115, 1146, 1697, 1946
BshNI	GGYRCC	1 cut(s)	1505
BsiHKAI	GWGCWC	3 cut(s)	336, 698, 1269
BsiHKCI	CYCGRG	1 cut(s)	1613
BsiSI	CCGG	3 cut(s)	251, 437, 1559
BslFI	GGGAC	2 cut(s)	114, 994
BslI	CCNNNNNNNGG	2 cut(s)	632, 1856
BsmAI	GTCTC	3 cut(s)	16, 1517, 1651
BsmBI	CGTCTC	2 cut(s)	1517, 1651
BsmFI	GGGAC	2 cut(s)	114, 994
BsmI	GAATGC	1 cut(s)	1724
BsnI	GGCC	4 cut(s)	115, 1146, 1697, 1946
Bso31I	GGTCTC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	1613
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	3 cut(s)	336, 698, 1269
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	6 cut(s)	266, 381, 747, 937, 940, 1650
BspANI	GGCC	4 cut(s)	115, 1146, 1697, 1946
BspCNI	CTCAG	3 cut(s)	193, 1497, 1513
BspFNI	CGCG	2 cut(s)	660, 1899
BspHI	TCATGA	2 cut(s)	549, 1405
BspLI	GGNNCC	4 cut(s)	1010, 1207, 1507, 1945
BspMAI	CTGCAG	2 cut(s)	781, 925
BspPI	GGATC	3 cut(s)	223, 1867, 1946
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	1505
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	6 cut(s)	192, 198, 431, 452, 955, 1254
BsrI	ACTGG	2 cut(s)	283, 1232
BssECI	CCNNGG	5 cut(s)	249, 585, 1420, 1602, 1614
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	585, 1602
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	6 cut(s)	11, 908, 1017, 1401, 1573, 1883
Bst6I	CTCTTC	2 cut(s)	1460, 1536
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	7 cut(s)	563, 658, 986, 1139, 1347, 1518, 1979
BstDEI	CTNAG	5 cut(s)	180, 1484, 1521, 1584, 1691
BstDSI	CCRYGG	2 cut(s)	585, 1420
BstF5I	GGATG	3 cut(s)	1078, 1113, 1567
BstFNI	CGCG	2 cut(s)	660, 1899
BstH2I	RGCGCY	1 cut(s)	1420
BstHHI	GCGC	5 cut(s)	7, 752, 1419, 1672, 1901
BstMAI	GTCTC	3 cut(s)	16, 1517, 1651
BstMWI	GCNNNNNNNGC	4 cut(s)	945, 990, 999, 1143
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	988, 1981
BstSCI	CCNGG	3 cut(s)	147, 249, 1557
BstSFI	CTRYAG	5 cut(s)	76, 604, 777, 921, 1935
BstUI	CGCG	2 cut(s)	660, 1899
BstV2I	GAAGAC	3 cut(s)	357, 549, 1877
BstX2I	RGATCY	3 cut(s)	722, 1186, 1951
BstYI	RGATCY	3 cut(s)	722, 1186, 1951
BsuI	GTATCC	2 cut(s)	1244, 1744
BsuRI	GGCC	4 cut(s)	115, 1146, 1697, 1946
BtgI	CCRYGG	2 cut(s)	585, 1420
BtsCI	GGATG	3 cut(s)	1078, 1113, 1567
BtsI	GCAGTG	1 cut(s)	1132
BtsIMutI	CAGTG	3 cut(s)	845, 1132, 1464
Cac8I	GCNNGC	7 cut(s)	563, 658, 986, 1139, 1347, 1518, 1979
CciI	TCATGA	2 cut(s)	549, 1405
CfoI	GCGC	5 cut(s)	7, 752, 1419, 1672, 1901
Cfr13I	GGNCC	5 cut(s)	397, 1008, 1205, 1695, 1944
CseI	GACGC	2 cut(s)	1165, 1664
Csp6I	GTAC	6 cut(s)	143, 415, 443, 598, 737, 1717
CviAII	CATG	9 cut(s)	550, 586, 985, 1069, 1082, 1406, 1579, 1641, 1978
CviQI	GTAC	6 cut(s)	143, 415, 443, 598, 737, 1717
DdeI	CTNAG	5 cut(s)	180, 1484, 1521, 1584, 1691
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	1460, 1536
EarI	CTCTTC	2 cut(s)	1460, 1536
EciI	GGCGGA	1 cut(s)	926
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	585, 1602
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	1182
Eco47I	GGWCC	3 cut(s)	397, 1008, 1205
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	498, 1296
Eco88I	CYCGRG	1 cut(s)	1613
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	1008
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	1182
EcoT14I	CCWWGG	2 cut(s)	585, 1602
EcoT22I	ATGCAT	2 cut(s)	1726, 1983
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	585, 1602
Esp3I	CGTCTC	2 cut(s)	1517, 1651
FaeI	CATG	9 cut(s)	553, 589, 988, 1072, 1085, 1409, 1582, 1644, 1981
FalI	AAGNNNNNCTT	2 cut(s)	1289, 1321
FaqI	GGGAC	2 cut(s)	114, 994
FatI	CATG	9 cut(s)	549, 585, 984, 1068, 1081, 1405, 1578, 1640, 1977
FbaI	TGATCA	3 cut(s)	526, 835, 1626
FokI	GGATG	3 cut(s)	1085, 1100, 1574
FriOI	GRGCYC	1 cut(s)	336
FspBI	CTAG	2 cut(s)	764, 1538
GlaI	GCGC	5 cut(s)	6, 751, 1418, 1671, 1900
GsaI	CCCAGC	1 cut(s)	960
HaeII	RGCGCY	1 cut(s)	1420
HaeIII	GGCC	4 cut(s)	115, 1146, 1697, 1946
HapII	CCGG	3 cut(s)	251, 437, 1559
HgaI	GACGC	2 cut(s)	1165, 1664
HhaI	GCGC	5 cut(s)	7, 752, 1419, 1672, 1901
Hin1II	CATG	9 cut(s)	553, 589, 988, 1072, 1085, 1409, 1582, 1644, 1981
Hin6I	GCGC	5 cut(s)	5, 750, 1417, 1670, 1899
HinP1I	GCGC	5 cut(s)	5, 750, 1417, 1670, 1899
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	2 cut(s)	688, 1139
HinfI	GANTC	8 cut(s)	28, 254, 425, 1063, 1097, 1119, 1363, 1687
HpaII	CCGG	3 cut(s)	251, 437, 1559
HphI	GGTGA	5 cut(s)	23, 1114, 1436, 1450, 1604
Hpy166II	GTNNAC	3 cut(s)	622, 867, 1567
Hpy188I	TCNGA	9 cut(s)	478, 904, 1118, 1186, 1290, 1447, 1487, 1686, 1750
Hpy8I	GTNNAC	3 cut(s)	622, 867, 1567
Hpy99I	CGWCG	1 cut(s)	1159
HpyCH4III	ACNGT	6 cut(s)	11, 908, 1017, 1401, 1573, 1883
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	8 cut(s)	779, 923, 1137, 1259, 1724, 1772, 1834, 1981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	945, 990, 999, 1143
HpyF3I	CTNAG	5 cut(s)	180, 1484, 1521, 1584, 1691
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	9 cut(s)	553, 589, 988, 1072, 1085, 1409, 1582, 1644, 1981
HspAI	GCGC	5 cut(s)	5, 750, 1417, 1670, 1899
Ksp22I	TGATCA	3 cut(s)	526, 835, 1626
LmnI	GCTCC	1 cut(s)	1865
MaeI	CTAG	2 cut(s)	764, 1538
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	4 cut(s)	661, 970, 1084, 1822
MfeI	CAATTG	1 cut(s)	1835
MflI	RGATCY	3 cut(s)	722, 1186, 1951
MhlI	GDGCHC	3 cut(s)	336, 698, 1269
MluI	ACGCGT	1 cut(s)	658
MlyI	GAGTC	2 cut(s)	37, 263
MmeI	TCCRAC	3 cut(s)	1212, 1470, 1664
Mph1103I	ATGCAT	2 cut(s)	1726, 1983
MroXI	GAANNNNTTC	2 cut(s)	210, 1101
MseI	TTAA	3 cut(s)	684, 932, 1926
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	3 cut(s)	251, 437, 1559
MspR9I	CCNGG	3 cut(s)	149, 251, 1559
MunI	CAATTG	1 cut(s)	1835
Mva1269I	GAATGC	1 cut(s)	1724
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	2 cut(s)	660, 1899
MwoI	GCNNNNNNNGC	4 cut(s)	945, 990, 999, 1143
NciI	CCSGG	2 cut(s)	251, 1559
NcoI	CCATGG	1 cut(s)	585
NlaIII	CATG	9 cut(s)	553, 589, 988, 1072, 1085, 1409, 1582, 1644, 1981
NlaIV	GGNNCC	4 cut(s)	1010, 1207, 1507, 1945
NmeAIII	GCCGAG	2 cut(s)	140, 1336
NmuCI	GTSAC	2 cut(s)	661, 970
NsiI	ATGCAT	2 cut(s)	1726, 1983
NspI	RCATGY	2 cut(s)	988, 1981
NspV	TTCGAA	1 cut(s)	519
PaeI	GCATGC	2 cut(s)	988, 1981
PagI	TCATGA	2 cut(s)	549, 1405
PctI	GAATGC	1 cut(s)	1724
PdmI	GAANNNNTTC	2 cut(s)	210, 1101
PfeI	GAWTC	6 cut(s)	425, 1063, 1097, 1119, 1363, 1687
PflFI	GACNNNGTC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	147
PleI	GAGTC	2 cut(s)	36, 262
PpsI	GAGTC	2 cut(s)	36, 262
PpuMI	RGGWCCY	1 cut(s)	1008
PsiI	TTATAA	1 cut(s)	1815
Psp124BI	GAGCTC	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	1008
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	956
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	4 cut(s)	1010, 1207, 1507, 1945
PspPI	GGNCC	5 cut(s)	397, 1008, 1205, 1695, 1944
PspPPI	RGGWCCY	1 cut(s)	1008
PsrI	GAACNNNNNNTAC	2 cut(s)	398, 430
PstI	CTGCAG	2 cut(s)	781, 925
PsuI	RGATCY	3 cut(s)	722, 1186, 1951
PsyI	GACNNNGTC	1 cut(s)	27
RsaI	GTAC	6 cut(s)	144, 416, 444, 599, 738, 1718
RsaNI	GTAC	6 cut(s)	143, 415, 443, 598, 737, 1717
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	684, 932, 1926
Sau96I	GGNCC	5 cut(s)	397, 1008, 1205, 1695, 1944
ScaI	AGTACT	1 cut(s)	144
SchI	GAGTC	2 cut(s)	37, 263
ScrFI	CCNGG	3 cut(s)	149, 251, 1559
SduI	GDGCHC	3 cut(s)	336, 698, 1269
SfcI	CTRYAG	5 cut(s)	76, 604, 777, 921, 1935
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	3 cut(s)	397, 1008, 1205
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	5 cut(s)	401, 458, 691, 1162, 1907
SmoI	CTYRAG	5 cut(s)	401, 458, 691, 1162, 1907
SphI	GCATGC	2 cut(s)	988, 1981
SsiI	CCGC	6 cut(s)	266, 381, 747, 937, 940, 1650
SspMI	CTAG	2 cut(s)	764, 1538
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	147, 249, 1557
StyI	CCWWGG	2 cut(s)	585, 1602
TaaI	ACNGT	6 cut(s)	11, 908, 1017, 1401, 1573, 1883
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	6 cut(s)	139, 323, 519, 874, 1655, 1797
TaqII	GACCGA	1 cut(s)	40
TatI	WGTACW	3 cut(s)	142, 736, 1716
TauI	GCSGC	4 cut(s)	269, 384, 750, 942
TfiI	GAWTC	6 cut(s)	425, 1063, 1097, 1119, 1363, 1687
Tru1I	TTAA	3 cut(s)	684, 932, 1926
Tru9I	TTAA	3 cut(s)	684, 932, 1926
TscAI	CASTG	3 cut(s)	845, 1139, 1471
TseFI	GTSAC	2 cut(s)	661, 970
Tsp45I	GTSAC	2 cut(s)	661, 970
TspDTI	ATGAA	8 cut(s)	566, 894, 1070, 1233, 1376, 1394, 1567, 1629
TspRI	CASTG	3 cut(s)	845, 1139, 1471
Tth111I	GACNNNGTC	1 cut(s)	27
VpaK11BI	GGWCC	3 cut(s)	397, 1008, 1205
XapI	RAATTY	3 cut(s)	41, 515, 1766
XbaI	TCTAGA	1 cut(s)	1537
XceI	RCATGY	2 cut(s)	988, 1981
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XmnI	GAANNNNTTC	2 cut(s)	210, 1101
XspI	CTAG	2 cut(s)	764, 1538
ZrmI	AGTACT	1 cut(s)	144
Zsp2I	ATGCAT	2 cut(s)	1726, 1983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.