Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

12745036 .. 12751683

Gene Structure 6648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG164400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGGTGAGAAATCCCACCGACCCAGTAAAAAGCACAAATCGTCGGCCAAGGTTTGCTTCATATAGTAACCACGATCTTCCGATTACTTTTACCGCGATGCGATGTAGTTTTCTTCATACCAAGCCTTTTGTGCAGGAAAGCATCCCTGTGGAGGACTACGAAGCCTACGTCGGCGGCGAAGAACTCGACGATGACGTTCGCGGCGACGGCGAAGTTAAAAAGAGGGATTTTACTAAGCTGGAATTGAAACCTGACCACATGAATCGGCCTTTGTGGGCCTGCGCCGATGGTAGAATATTTCTCGAGACGTTCTCAGCTTTGTACAAGCAAGCCTATGATTTTCTCATCGCCATTGCGGAGCCGGTTTGCAGGCCGGAGTCAATGCACGAGTACAACTTGACCCCACATTCCTTGTATGCGGCGGTGTCTGTTGGTCTGGAAACGCAAACTATCATTTCGGTTTTGGATAAGCTGTCAAAGACCAAGCTCCCCAAAGAAATGATTGATTTCATACACGGTTCTACGGCTAATTACGGCAAAGTGAAGCTTGTGCTGAAGAAGAATCGGTATTATGTTGAATCCCCATTCCCAGAGGTATTGAAGAAATTGCTCAGGGATGACGTTATATCCAAATCAAGGATTATTCCTGAGGGTGCTAATGGAAATGGTGGATTTACAATTAGCAAAACCTTGGGCGAAATTGCAGCCGATTCCAGTGGTTTGCTAAATGAAGCAGAATTGGCAGCTGCGGCTGAAGAAAAAGAAACTCACGCATTTGAAATTGATCCTTCACAGGTTGAGAAAGTAAAAGAACGTTGTTTGCCAAACGCTTTGAACTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACGGTTAACCCTGATCTTGATATGGAACTCAAGCCTCAAGCGCAACCACGACCATATCAAGAGAAGAGCTTGAGTAAAATGTTTGGAAATGGGAGAGCACGATCTGGCATTATTGTGTTACCTTGTGGTGCTGGAAAATCTCTAGTTGGTGTTTCTGCAGCCTCCCGAATAAAAAAGAGCTGCCTTTGTCTAGCAACAAATGCTGTTTCTGTTGATCAATGGGCTTTTCAGTTTAAATTGTGGTCAACCATTCGAGATGAACACATTTGTCGTTTCACATCTGATAGCAAAGAAAGATTCCGCGGAAATGCTGGGGTGGTTGTGACAACATATAACATGGTTGCGTTTGGTGGCAAGAGGTCCGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAATAGAGAATGGGGATTGCTTCTCATGGATGAGGTGCACGTTGTTCCTGCTCAGATGTTTCGAAAGGTTATCGCCATTACCAAATCACACTGCAAGCTTGGACTGACCGCCACGCTTGTGAGAGAGGATGAGAGGATCACAGATCTGAATTTCCTAATTGGTCCCAAATTGTATGAAGCAAACTGGCTGGATTTGGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACGAAGGAGTTCTTTGCAGAATATTTGAAGAAAGAGAACTCCAAGAAAAAGCAGGCACTTTATGTGATGAATCCGAATAAGTTTAGGGCTTGTGAGTTTCTTATACGGTTTCATGAACAGCAACGTGGTGATAAAATTATCGTCTTTGCTGACAATCTCTTTGCTCTCACGGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGAGCTACCAGCCATGTTGAGAGGACAAAGATCTTAGAAGCCTTCAAAACAAGTCGGGACGTAAATACTGTATTCTTGTCAAAGGTGGGAGATAATTCTATTGACATTCCTGAGGCAAATGTGATAATTCAGATATCATCACATGCTGGTTCAAGACGTCAAGAAGCACAGCGTCTTGGTCGTATTCTGAGGGCCAAGGGTAAACTTCGGGATCGGATGGCAGGAGGTAAAGAGGAGTATAATGCATTCTTTTATTCTCTCGTGTCAACTGATACACAGGAGATGTACTATTCAACTAAACGACAACAGTTTTTGATTGATCAAGGGTATAGTTTTAAGGTTATTACAAGCTTGCCTCCACCTGATTCAGGAGCTGATTTGAGCTACCACCGTCTTGATGAGCAATTGCACCTACTCACAAAGGTGTTAACTGCTGGTGACGATGCTGTTGGCTTAGAGCAACTAGACGAAGATGTGGATGACATTGCCCTTCTTAAATCACGTCGTTTCTCTGGATCCATGAGTGCGATGTCGGGTGCCAATGGGATGGTTTACATGGAATATAGTACTGGGAAAAACAAAAATGGCAAAGGACAGATGAAGAGTAAGCCCAAGGATCCGGCCAAGAGACATCATTTGTTTAAAAAGCGCTTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

794

Amino Acids

89.82

Weight (kDa)

8.67

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	91 - 213	2.1e-33	Helicase conserved C-terminal domain
ResIII	PF04851	306 - 463	1.2e-17	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	488 - 734	2.7e-116	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	538 - 640	1.3e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1885
AccB1I	GGYRCC	1 cut(s)	2261
AccII	CGCG	3 cut(s)	95, 201, 1176
AclI	AACGTT	1 cut(s)	814
AclWI	GGATC	7 cut(s)	779, 1412, 1944, 2235, 2248, 2336, 2349
AcoI	YGGCCR	2 cut(s)	44, 2346
AcsI	RAATTY	1 cut(s)	1417
AcuI	CTGAAG	4 cut(s)	575, 774, 847, 1521
AcyI	GRCGYC	1 cut(s)	1882
AfaI	GTAC	5 cut(s)	323, 392, 1491, 2012, 2293
AfeI	AGCGCT	1 cut(s)	2375
AfiI	CCNNNNNNNGG	3 cut(s)	151, 636, 2093
AjiI	CACGTC	1 cut(s)	2228
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AleI	CACNNNNGTG	2 cut(s)	1385, 2147
Alw21I	GWGCWC	2 cut(s)	973, 1308
Alw26I	GTCTC	2 cut(s)	299, 2347
Alw44I	GTGCAC	1 cut(s)	1304
AlwI	GGATC	7 cut(s)	779, 1412, 1944, 2235, 2248, 2336, 2349
AlwNI	CAGNNNCTG	1 cut(s)	2099
Ama87I	CYCGRG	1 cut(s)	302
Aor51HI	AGCGCT	1 cut(s)	2375
AoxI	GGCC	6 cut(s)	44, 266, 276, 371, 1917, 2346
ApaLI	GTGCAC	1 cut(s)	1304
ApeKI	GCWGC	5 cut(s)	704, 743, 746, 1031, 1053
ApoI	RAATTY	1 cut(s)	1417
ArsI	GACNNNNNNTTYG	4 cut(s)	153, 185, 1661, 1693
Asp700I	GAANNNNTTC	1 cut(s)	1526
AspLEI	GCGC	3 cut(s)	284, 916, 2376
AspS9I	GGNCC	4 cut(s)	276, 1233, 1430, 1917
AsuHPI	GGTGA	3 cut(s)	16, 1658, 2174
AsuII	TTCGAA	1 cut(s)	1330
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	1233, 1430
AxyI	CCTNAGG	2 cut(s)	648, 1836
BaeGI	GKGCMC	1 cut(s)	1308
BamHI	GGATCC	2 cut(s)	2240, 2341
BanI	GGYRCC	1 cut(s)	2261
BauI	CACGAG	2 cut(s)	386, 1985
Bbv12I	GWGCWC	2 cut(s)	973, 1308
BbvI	GCAGC	5 cut(s)	716, 733, 755, 1040, 1043
BccI	CCATC	3 cut(s)	281, 1936, 2266
BceAI	ACGGC	3 cut(s)	223, 540, 550
BclI	TGATCA	2 cut(s)	1087, 2044
BcoDI	GTCTC	2 cut(s)	299, 2347
BfaI	CTAG	3 cut(s)	1016, 1064, 2189
BfmI	CTRYAG	1 cut(s)	1029
BfoI	RGCGCY	1 cut(s)	2377
BglII	AGATCT	2 cut(s)	1411, 1755
BisI	GCNGC	9 cut(s)	175, 202, 420, 705, 744, 747, 750, 1032, 1054
BlsI	GCNGC	9 cut(s)	176, 203, 421, 706, 745, 748, 751, 1033, 1055
BmcAI	AGTACT	1 cut(s)	2293
Bme18I	GGWCC	2 cut(s)	1233, 1430
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	2228
BmgT120I	GGNCC	4 cut(s)	276, 1233, 1430, 1917
BmiI	GGNNCC	5 cut(s)	360, 1432, 2242, 2263, 2343
BmrI	ACTGGG	2 cut(s)	17, 2304
BmsI	GCATC	3 cut(s)	87, 150, 2158
BmuI	ACTGGG	2 cut(s)	17, 2304
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu10I	CCTNAGC	1 cut(s)	611
Bpu14I	TTCGAA	1 cut(s)	1330
BpuEI	CTTGAG	3 cut(s)	887, 894, 964
BsaHI	GRCGYC	1 cut(s)	1882
BsaJI	CCNNGG	5 cut(s)	47, 690, 1174, 1920, 2337
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 636, 2093
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	4 cut(s)	23, 714, 1457, 2299
Bse21I	CCTNAGG	2 cut(s)	648, 1836
Bse3DI	GCAATG	3 cut(s)	351, 1704, 2208
BseDI	CCNNGG	5 cut(s)	47, 690, 1174, 1920, 2337
BseGI	GGATG	7 cut(s)	141, 622, 1303, 1402, 1947, 2209, 2277
BseLI	CCNNNNNNNGG	3 cut(s)	151, 636, 2093
BseMI	GCAATG	3 cut(s)	351, 1704, 2208
BseMII	CTCAG	6 cut(s)	327, 625, 639, 1334, 1827, 1904
BseNI	ACTGG	4 cut(s)	23, 714, 1457, 2299
BseRI	GAGGAG	2 cut(s)	866, 1973
BseSI	GKGCMC	1 cut(s)	1308
BseXI	GCAGC	5 cut(s)	716, 733, 755, 1040, 1043
BseYI	CCCAGC	1 cut(s)	1184
BsgI	GTGCAG	1 cut(s)	152
Bsh1236I	CGCG	3 cut(s)	95, 201, 1176
BshFI	GGCC	6 cut(s)	46, 268, 278, 373, 1919, 2348
BshNI	GGYRCC	1 cut(s)	2261
BsiHKAI	GWGCWC	2 cut(s)	973, 1308
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	362, 374, 2345
BslFI	GGGAC	2 cut(s)	1416, 1796
BslI	CCNNNNNNNGG	3 cut(s)	151, 636, 2093
BsmAI	GTCTC	2 cut(s)	299, 2347
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	1416, 1796
BsmI	GAATGC	1 cut(s)	1970
BsnI	GGCC	6 cut(s)	46, 268, 278, 373, 1919, 2348
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	1330
Bsp1286I	GDGCHC	2 cut(s)	973, 1308
Bsp1407I	TGTACA	2 cut(s)	321, 1489
BspANI	GGCC	6 cut(s)	46, 268, 278, 373, 1919, 2348
BspCNI	CTCAG	6 cut(s)	326, 624, 640, 1333, 1828, 1905
BspFNI	CGCG	3 cut(s)	95, 201, 1176
BspHI	TCATGA	1 cut(s)	1630
BspLI	GGNNCC	5 cut(s)	360, 1432, 2242, 2263, 2343
BspMAI	CTGCAG	1 cut(s)	1033
BspPI	GGATC	7 cut(s)	779, 1412, 1944, 2235, 2248, 2336, 2349
BspQI	GCTCTTC	1 cut(s)	932
BspT104I	TTCGAA	1 cut(s)	1330
BspT107I	GGYRCC	1 cut(s)	2261
BsrDI	GCAATG	3 cut(s)	351, 1704, 2208
BsrFI	RCCGGY	1 cut(s)	361
BsrGI	TGTACA	2 cut(s)	321, 1489
BsrI	ACTGG	4 cut(s)	23, 714, 1457, 2299
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	5 cut(s)	47, 690, 1174, 1920, 2337
BssNI	GRCGYC	1 cut(s)	1882
BssSI	CACGAG	2 cut(s)	386, 1985
BssT1I	CCWWGG	4 cut(s)	47, 690, 1920, 2337
Bst2BI	CACGAG	2 cut(s)	386, 1985
Bst4CI	ACNGT	7 cut(s)	518, 877, 1494, 1626, 1795, 2034, 2117
Bst6I	CTCTTC	2 cut(s)	932, 2321
BstACI	GRCGYC	1 cut(s)	1882
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstAUI	TGTACA	2 cut(s)	321, 1489
BstBI	TTCGAA	1 cut(s)	1330
BstC8I	GCNNGC	6 cut(s)	280, 330, 371, 1364, 1572, 2078
BstDEI	CTNAG	9 cut(s)	234, 313, 611, 648, 1320, 1759, 1836, 1913, 2179
BstDSI	CCRYGG	1 cut(s)	1174
BstENI	CCTNNNNNAGG	1 cut(s)	2091
BstF5I	GGATG	7 cut(s)	141, 622, 1303, 1402, 1947, 2209, 2277
BstFNI	CGCG	3 cut(s)	95, 201, 1176
BstH2I	RGCGCY	1 cut(s)	2377
BstHHI	GCGC	3 cut(s)	284, 916, 2376
BstMAI	GTCTC	2 cut(s)	299, 2347
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 207, 740, 749, 913, 1073
BstNSI	RCATGY	1 cut(s)	1871
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	1 cut(s)	1308
BstUI	CGCG	3 cut(s)	95, 201, 1176
BstV1I	GCAGC	5 cut(s)	716, 733, 755, 1040, 1043
BstX2I	RGATCY	4 cut(s)	1411, 1755, 2240, 2341
BstXI	CCANNNNNNTGG	1 cut(s)	2272
BstYI	RGATCY	4 cut(s)	1411, 1755, 2240, 2341
Bsu36I	CCTNAGG	2 cut(s)	648, 1836
BsuRI	GGCC	6 cut(s)	46, 268, 278, 373, 1919, 2348
BtgI	CCRYGG	1 cut(s)	1174
BtgZI	GCGATG	4 cut(s)	110, 115, 331, 2267
BtrI	CACGTC	1 cut(s)	2228
BtsCI	GGATG	7 cut(s)	141, 622, 1303, 1402, 1947, 2209, 2277
BtsI	GCAGTG	1 cut(s)	1357
BtsIMutI	CAGTG	3 cut(s)	721, 1357, 1499
Cac8I	GCNNGC	6 cut(s)	280, 330, 371, 1364, 1572, 2078
CaiI	CAGNNNCTG	1 cut(s)	2099
CciI	TCATGA	1 cut(s)	1630
CfoI	GCGC	3 cut(s)	284, 916, 2376
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	4 cut(s)	276, 1233, 1430, 1917
Cfr42I	CCGCGG	1 cut(s)	1177
CseI	GACGC	1 cut(s)	1886
Csp6I	GTAC	5 cut(s)	322, 391, 1490, 2011, 2292
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	9 cut(s)	259, 844, 1210, 1294, 1631, 1739, 1868, 2245, 2281
CviQI	GTAC	5 cut(s)	322, 391, 1490, 2011, 2292
DdeI	CTNAG	9 cut(s)	234, 313, 611, 648, 1320, 1759, 1836, 1913, 2179
DraI	TTTAAA	2 cut(s)	1108, 2368
EaeI	YGGCCR	2 cut(s)	44, 2346
Eam1104I	CTCTTC	2 cut(s)	932, 2321
EarI	CTCTTC	2 cut(s)	932, 2321
Eco130I	CCWWGG	4 cut(s)	47, 690, 1920, 2337
Eco32I	GATATC	1 cut(s)	1860
Eco47I	GGWCC	2 cut(s)	1233, 1430
Eco47III	AGCGCT	1 cut(s)	2375
Eco57I	CTGAAG	4 cut(s)	575, 774, 847, 1521
Eco81I	CCTNAGG	2 cut(s)	648, 1836
Eco88I	CYCGRG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	2091
EcoRV	GATATC	1 cut(s)	1860
EcoT14I	CCWWGG	4 cut(s)	47, 690, 1920, 2337
EcoT22I	ATGCAT	1 cut(s)	1972
ErhI	CCWWGG	4 cut(s)	47, 690, 1920, 2337
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	9 cut(s)	262, 847, 1213, 1297, 1634, 1742, 1871, 2248, 2284
FalI	AAGNNNNNCTT	6 cut(s)	40, 72, 531, 563, 1514, 1546
FaqI	GGGAC	2 cut(s)	1416, 1796
FatI	CATG	9 cut(s)	258, 843, 1209, 1293, 1630, 1738, 1867, 2244, 2280
FbaI	TGATCA	2 cut(s)	1087, 2044
Fnu4HI	GCNGC	9 cut(s)	175, 202, 420, 705, 744, 747, 750, 1032, 1054
FokI	GGATG	7 cut(s)	128, 629, 1310, 1409, 1954, 2216, 2284
Fsp4HI	GCNGC	9 cut(s)	175, 202, 420, 705, 744, 747, 750, 1032, 1054
FspBI	CTAG	3 cut(s)	1016, 1064, 2189
GlaI	GCGC	3 cut(s)	283, 915, 2375
GluI	GCNGC	9 cut(s)	175, 202, 420, 705, 744, 747, 750, 1032, 1054
GsaI	CCCAGC	1 cut(s)	1188
HaeII	RGCGCY	1 cut(s)	2377
HaeIII	GGCC	6 cut(s)	46, 268, 278, 373, 1919, 2348
HapII	CCGG	3 cut(s)	362, 374, 2345
HgaI	GACGC	1 cut(s)	1886
HhaI	GCGC	3 cut(s)	284, 916, 2376
Hin1I	GRCGYC	1 cut(s)	1882
Hin1II	CATG	9 cut(s)	262, 847, 1213, 1297, 1634, 1742, 1871, 2248, 2284
Hin6I	GCGC	3 cut(s)	282, 914, 2374
HinP1I	GCGC	3 cut(s)	282, 914, 2374
HincII	GTYRAC	4 cut(s)	880, 1119, 1992, 2154
HindII	GTYRAC	4 cut(s)	880, 1119, 1992, 2154
HindIII	AAGCTT	3 cut(s)	545, 1364, 2074
HinfI	GANTC	9 cut(s)	262, 377, 562, 578, 710, 1170, 1241, 1588, 2090
HpaI	GTTAAC	2 cut(s)	880, 2154
HpaII	CCGG	3 cut(s)	362, 374, 2345
HphI	GGTGA	3 cut(s)	16, 1658, 2174
Hpy166II	GTNNAC	7 cut(s)	880, 1119, 1306, 1928, 1992, 2154, 2278
Hpy8I	GTNNAC	7 cut(s)	880, 1119, 1306, 1928, 1992, 2154, 2278
Hpy99I	CGWCG	5 cut(s)	45, 173, 191, 209, 2232
HpyAV	CCTTC	4 cut(s)	798, 1516, 1777, 2225
HpyCH4III	ACNGT	7 cut(s)	518, 877, 1494, 1626, 1795, 2034, 2117
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 207, 740, 749, 913, 1073
HpyF3I	CTNAG	9 cut(s)	234, 313, 611, 648, 1320, 1759, 1836, 1913, 2179
Hsp92I	GRCGYC	1 cut(s)	1882
Hsp92II	CATG	9 cut(s)	262, 847, 1213, 1297, 1634, 1742, 1871, 2248, 2284
HspAI	GCGC	3 cut(s)	282, 914, 2374
Ksp22I	TGATCA	2 cut(s)	1087, 2044
KspAI	GTTAAC	2 cut(s)	880, 2154
KspI	CCGCGG	1 cut(s)	1177
LguI	GCTCTTC	1 cut(s)	932
LmnI	GCTCC	4 cut(s)	358, 492, 1727, 2096
Lsp1109I	GCAGC	5 cut(s)	716, 733, 755, 1040, 1043
LweI	GCATC	3 cut(s)	87, 150, 2158
MaeI	CTAG	3 cut(s)	1016, 1064, 2189
MaeIII	GTNAC	4 cut(s)	65, 990, 1195, 2162
MfeI	CAATTG	1 cut(s)	2129
MflI	RGATCY	4 cut(s)	1411, 1755, 2240, 2341
MhlI	GDGCHC	2 cut(s)	973, 1308
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	828
Mph1103I	ATGCAT	1 cut(s)	1972
MroXI	GAANNNNTTC	1 cut(s)	1526
MseI	TTAA	7 cut(s)	216, 879, 1107, 2061, 2153, 2220, 2367
MslI	CAYNNNNRTG	4 cut(s)	146, 986, 1385, 2147
MspA1I	CMGCKG	2 cut(s)	746, 1176
MspI	CCGG	3 cut(s)	362, 374, 2345
MunI	CAATTG	1 cut(s)	2129
Mva1269I	GAATGC	1 cut(s)	1970
MvnI	CGCG	3 cut(s)	95, 201, 1176
MwoI	GCNNNNNNNGC	6 cut(s)	130, 207, 740, 749, 913, 1073
NlaIII	CATG	9 cut(s)	262, 847, 1213, 1297, 1634, 1742, 1871, 2248, 2284
NlaIV	GGNNCC	5 cut(s)	360, 1432, 2242, 2263, 2343
NmuCI	GTSAC	2 cut(s)	1195, 2162
NsiI	ATGCAT	1 cut(s)	1972
NspI	RCATGY	1 cut(s)	1871
NspV	TTCGAA	1 cut(s)	1330
OliI	CACNNNNGTG	2 cut(s)	1385, 2147
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	1630
PciSI	GCTCTTC	1 cut(s)	932
PcsI	WCGNNNNNNNCGW	4 cut(s)	165, 174, 192, 201
PctI	GAATGC	1 cut(s)	1970
PdmI	GAANNNNTTC	1 cut(s)	1526
PfeI	GAWTC	8 cut(s)	262, 562, 578, 710, 1170, 1241, 1588, 2090
PkrI	GCNGC	9 cut(s)	176, 203, 421, 706, 745, 748, 751, 1033, 1055
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp1406I	AACGTT	1 cut(s)	814
PspFI	CCCAGC	1 cut(s)	1184
PspN4I	GGNNCC	5 cut(s)	360, 1432, 2242, 2263, 2343
PspPI	GGNCC	4 cut(s)	276, 1233, 1430, 1917
PstI	CTGCAG	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	2099
PsuI	RGATCY	4 cut(s)	1411, 1755, 2240, 2341
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	5 cut(s)	323, 392, 1491, 2012, 2293
RsaNI	GTAC	5 cut(s)	322, 391, 1490, 2011, 2292
RseI	CAYNNNNRTG	4 cut(s)	146, 986, 1385, 2147
SacII	CCGCGG	1 cut(s)	1177
SapI	GCTCTTC	1 cut(s)	932
SaqAI	TTAA	7 cut(s)	216, 879, 1107, 2061, 2153, 2220, 2367
SatI	GCNGC	9 cut(s)	175, 202, 420, 705, 744, 747, 750, 1032, 1054
Sau96I	GGNCC	4 cut(s)	276, 1233, 1430, 1917
ScaI	AGTACT	1 cut(s)	2293
SchI	GAGTC	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	973, 1308
SfaNI	GCATC	3 cut(s)	87, 150, 2158
SfcI	CTRYAG	1 cut(s)	1029
Sfr274I	CTCGAG	1 cut(s)	302
Sfr303I	CCGCGG	1 cut(s)	1177
SfuI	TTCGAA	1 cut(s)	1330
SgrBI	CCGCGG	1 cut(s)	1177
SinI	GGWCC	2 cut(s)	1233, 1430
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	4 cut(s)	146, 986, 1385, 2147
SmlI	CTYRAG	4 cut(s)	302, 902, 909, 943
SmoI	CTYRAG	4 cut(s)	302, 902, 909, 943
SspI	AATATT	2 cut(s)	297, 1541
SspMI	CTAG	3 cut(s)	1016, 1064, 2189
StyI	CCWWGG	4 cut(s)	47, 690, 1920, 2337
TaaI	ACNGT	7 cut(s)	518, 877, 1494, 1626, 1795, 2034, 2117
TaqI	TCGA	4 cut(s)	186, 303, 1126, 1330
TatI	WGTACW	5 cut(s)	321, 390, 1489, 2010, 2291
TauI	GCSGC	4 cut(s)	177, 204, 422, 752
TfiI	GAWTC	8 cut(s)	262, 562, 578, 710, 1170, 1241, 1588, 2090
Tru1I	TTAA	7 cut(s)	216, 879, 1107, 2061, 2153, 2220, 2367
Tru9I	TTAA	7 cut(s)	216, 879, 1107, 2061, 2153, 2220, 2367
TscAI	CASTG	3 cut(s)	721, 1364, 1499
TseFI	GTSAC	2 cut(s)	1195, 2162
TseI	GCWGC	5 cut(s)	704, 743, 746, 1031, 1053
Tsp45I	GTSAC	2 cut(s)	1195, 2162
TspGWI	ACGGA	1 cut(s)	1703
TspRI	CASTG	3 cut(s)	721, 1364, 1499
VneI	GTGCAC	1 cut(s)	1304
VpaK11BI	GGWCC	2 cut(s)	1233, 1430
XagI	CCTNNNNNAGG	1 cut(s)	2091
XapI	RAATTY	1 cut(s)	1417
XceI	RCATGY	1 cut(s)	1871
XhoI	CTCGAG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	1526
XspI	CTAG	3 cut(s)	1016, 1064, 2189
ZraI	GACGTC	1 cut(s)	1883
ZrmI	AGTACT	1 cut(s)	2293
Zsp2I	ATGCAT	1 cut(s)	1972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.