FvH4_1g00910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004212
Physical Location & Seq
Forward (+)
450027 .. 451036
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00910.t1

Sequence Viewer

Length: 495 bp
ATGGAAATCCTAAACCTAAATTCCCAAACCCTTCTCTCTTTGACACCGCCAGCCATGGAAACGAGACGAAACCACCCCCAACAGGAAGAGCGCCCTTTGGATCTAGCTGGTGACAATATAAAAGAAGAAGGGAATTCGGAGACCCGAACAATCTGGGCAGGGGAAGAGAAGGCTGAGGCAACTGTGACAACATCACAAGAGAAAGCAGAGGCAAATGTGACACCAGCACATTTACAGTATACTGCAAACAGGCATTGTCCAAACTGTGGCCGCAATATATATACAAAGCCTTATTGTCCTAGATTAAGTTGTCGATTTTCTTCGGATCCTACCCCAGCGCTGCCCATGCGCCCTGCATCGGAGATCAAGACCAATTCAGAACTGGAATCTCACCCAAAATTAGAGTCAGACCGAGTTTCATTGTTTGCTTTTTTCACCAGAAAAGATTTAGATAGATTGATCGATCTCAGTATACGTAAAAATGTATTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.57

Weight (kDa)

6.11

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 2 cut(s) 239, 472
AciI CCGC 2 cut(s) 47, 271
AclWI GGATC 3 cut(s) 108, 320, 333
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 2 cut(s) 19, 133
AfeI AGCGCT 1 cut(s) 339
AfiI CCNNNNNNNGG 3 cut(s) 82, 266, 358
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 58, 134
AlwI GGATC 3 cut(s) 108, 320, 333
Aor51HI AGCGCT 1 cut(s) 339
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 2 cut(s) 19, 133
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 3 cut(s) 93, 340, 351
AsuHPI GGTGA 3 cut(s) 122, 383, 427
BamHI GGATCC 1 cut(s) 325
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 58, 134
BfaI CTAG 2 cut(s) 104, 300
BfoI RGCGCY 2 cut(s) 94, 341
BisI GCNGC 2 cut(s) 271, 341
BlsI GCNGC 2 cut(s) 272, 342
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 476
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 266, 358
Bse1I ACTGG 1 cut(s) 387
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 3 cut(s) 82, 266, 358
BseMII CTCAG 2 cut(s) 165, 481
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 334
BshFI GGCC 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 462
BslI CCNNNNNNNGG 3 cut(s) 82, 266, 358
BsmAI GTCTC 2 cut(s) 58, 134
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 5 cut(s) 100, 325, 363, 459, 463
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 2 cut(s) 47, 271
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 2 cut(s) 166, 480
BspDI ATCGAT 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 3 cut(s) 108, 320, 333
BspQI GCTCTTC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 5 cut(s) 100, 325, 363, 459, 463
BssNAI GTATAC 2 cut(s) 240, 473
BssT1I CCWWGG 1 cut(s) 54
Bst1107I GTATAC 2 cut(s) 240, 473
Bst4CI ACNGT 3 cut(s) 184, 237, 266
Bst6I CTCTTC 2 cut(s) 81, 159
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 174, 467
BstDSI CCRYGG 1 cut(s) 54
BstH2I RGCGCY 2 cut(s) 94, 341
BstHHI GCGC 3 cut(s) 93, 340, 351
BstKTI GATC 5 cut(s) 103, 328, 366, 462, 466
BstMAI GTCTC 2 cut(s) 58, 134
BstMBI GATC 5 cut(s) 100, 325, 363, 459, 463
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstSNI TACGTA 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 100, 325
BstYI RGATCY 2 cut(s) 100, 325
BstZ17I GTATAC 2 cut(s) 240, 473
Bsu15I ATCGAT 1 cut(s) 462
BsuRI GGCC 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 3 cut(s) 93, 340, 351
ClaI ATCGAT 1 cut(s) 462
CviAII CATG 2 cut(s) 55, 346
CviJI RGCY 5 cut(s) 53, 107, 173, 270, 289
CviKI_1 RGCY 5 cut(s) 53, 107, 173, 270, 289
DdeI CTNAG 2 cut(s) 174, 467
DpnI GATC 5 cut(s) 102, 327, 365, 461, 465
DpnII GATC 5 cut(s) 100, 325, 363, 459, 463
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 81, 159
EarI CTCTTC 2 cut(s) 81, 159
Eco105I TACGTA 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 134
Eco47III AGCGCT 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 2 cut(s) 58, 349
FaiI YATR 9 cut(s) 56, 119, 240, 278, 280, 282, 347, 473, 493
FatI CATG 2 cut(s) 54, 345
FblI GTMKAC 2 cut(s) 239, 472
Fnu4HI GCNGC 2 cut(s) 271, 341
Fsp4HI GCNGC 2 cut(s) 271, 341
FspBI CTAG 2 cut(s) 104, 300
GlaI GCGC 3 cut(s) 92, 339, 350
GluI GCNGC 2 cut(s) 271, 341
GsaI CCCAGC 1 cut(s) 338
HaeII RGCGCY 2 cut(s) 94, 341
HaeIII GGCC 1 cut(s) 270
HhaI GCGC 3 cut(s) 93, 340, 351
Hin1II CATG 2 cut(s) 58, 349
Hin6I GCGC 3 cut(s) 91, 338, 349
HinP1I GCGC 3 cut(s) 91, 338, 349
HinfI GANTC 2 cut(s) 386, 404
HphI GGTGA 3 cut(s) 122, 383, 427
Hpy166II GTNNAC 2 cut(s) 240, 473
Hpy188I TCNGA 5 cut(s) 139, 325, 361, 379, 409
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 240, 473
HpyAV CCTTC 3 cut(s) 41, 122, 163
HpyCH4III ACNGT 3 cut(s) 184, 237, 266
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 3 cut(s) 245, 356, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 2 cut(s) 174, 467
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 2 cut(s) 58, 349
HspAI GCGC 3 cut(s) 91, 338, 349
Kzo9I GATC 5 cut(s) 100, 325, 363, 459, 463
LguI GCTCTTC 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 1 cut(s) 365
MaeI CTAG 2 cut(s) 104, 300
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 3 cut(s) 110, 184, 217
MalI GATC 5 cut(s) 102, 327, 365, 461, 465
MboI GATC 5 cut(s) 100, 325, 363, 459, 463
MboII GAAGA 4 cut(s) 98, 137, 176, 312
MflI RGATCY 2 cut(s) 100, 325
MluCI AATT 4 cut(s) 19, 133, 373, 398
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 2 cut(s) 169, 202
MseI TTAA 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 346
NcoI CCATGG 1 cut(s) 54
NdeII GATC 5 cut(s) 100, 325, 363, 459, 463
NlaIII CATG 2 cut(s) 58, 349
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 3 cut(s) 110, 184, 217
PciSI GCTCTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 2 cut(s) 272, 342
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 476
PspFI CCCAGC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 2 cut(s) 100, 325
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 2 cut(s) 271, 341
Sau3AI GATC 5 cut(s) 100, 325, 363, 459, 463
SchI GAGTC 1 cut(s) 413
SetI ASST 3 cut(s) 18, 109, 478
SfaNI GCATC 1 cut(s) 365
SnaBI TACGTA 1 cut(s) 476
Sse9I AATT 4 cut(s) 19, 133, 373, 398
SsiI CCGC 2 cut(s) 47, 271
SspMI CTAG 2 cut(s) 104, 300
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 3 cut(s) 184, 237, 266
TaiI ACGT 1 cut(s) 478
TaqI TCGA 2 cut(s) 313, 462
TaqII GACCGA 1 cut(s) 426
TasI AATT 4 cut(s) 19, 133, 373, 398
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TseFI GTSAC 3 cut(s) 110, 184, 217
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 3 cut(s) 110, 184, 217
TspDTI ATGAA 1 cut(s) 408
Van91I CCANNNNNTGG 1 cut(s) 266
XapI RAATTY 2 cut(s) 19, 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 239, 472
XspI CTAG 2 cut(s) 104, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.