RchiOBHm_Chr6g0267261

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
23874363 .. 23877907
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23972

Sequence Viewer

Length: 1194 bp
ATGAAGACATGTCTTCACCTAAGCCCCCAAGTCTCGAGCCCGACCACCCAGGCCTCCATTCCCCCTGGATTTAGGAGGGCAACGATCAGATCTCCCATTGATTCGTTTGAAAAAACCTCGGGAAAAAGAAGAATGGGTGAGGAGGTGCAGAGTAAGCAAGGCCCTCCGAAGAAGAAAATGAGGGCGAGTGATGAGGTCGACAATCTTATGGAAGATGCCAAGAGGGAGACTCGGCAGTCCAAGGCTAGGCAGCGAGTTGACACTCCGGGTGCGCACCACCGTCAAGTTGACGTTCCAGAATTTCTTTCTGATTATGTTGGGGACATGATGGGGCTTGTTGATACTAAGACTTATACAGCAAATTTTGGGACCGGTGAACTTGAGGGGGAACTTGATTCTCTTGTGGAGGGGGCTAAAAGTTCTTTGATTTTGGCCAATTTGAAGAATCATCTCATAATTGATAAGATGGCGGAGAGGATTCGTGAGTTGGACTCCCAGGTGCTAGCAACTAACAAGGAGCTCAGGGCGACCCTGACTCAGCTGGGTCAAAAGAAGAAAGATGTGGCTAAGATGGAGGATTATCACAAAAGGCTGAAGGAAAAAGAAACAGAGGTTGATCAGCTAGGAGAAAAGGTTAAGGGCCTGGAGAAGGAACTCAGGGTTAAGGCCAATGAGTGCAAGAAAAACAAAGATCTGGAGGTGGAAGTCCAAGACCTTAGAGAGAGGGTTGAGGGTCTCAGGAGCAAGGCCAAGGCTAGTCGTAACAGTATTCTGAGGGAGTTCCAGGATTCTAAGGAGTACAAGGACATCCTAGAGAATAGCTACTCGGAGGGGTACACTGACTTGCTTACCCTGTGCGTAGAGCATTTTGTTGAGAAGGGTATGGGATGGGCAGTTTCTTTGGGTGTTGATGCTATGCCTTCAGAAATCAAGGGTAGCCCTTCTAAGGTTACACTTGCTGATGCAAGTCCAGGTCTTGCCCTGTCAAGTCATGAAGTTGAGGGATTGGACAGTGGAGGAGTCGACCAGGCAAGCGGGTCAGTATTGGGAGACGAACCTATCGAGGTACTAAGCGACGACCATCAGCAAGGTAAGTCTGGCACTGCTGACACTCCAGCTGAGGACAAAGGGGGTGCTCTTGGAGGTGGGGAAGATGGGAATGAAAGGGCTAAGGTGACAAATGTCGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

43.58

Weight (kDa)

5.45

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
Acc16I TGCGCA 1 cut(s) 273
AccI GTMKAC 2 cut(s) 198, 1023
AciI CCGC 2 cut(s) 470, 1035
AclWI GGATC 1 cut(s) 1181
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 2 cut(s) 299, 361
AcuI CTGAAG 2 cut(s) 614, 906
AfaI GTAC 3 cut(s) 800, 836, 1068
AfiI CCNNNNNNNGG 3 cut(s) 246, 649, 946
AflIII ACRYGT 1 cut(s) 8
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 2 cut(s) 110, 442
AjnI CCWGG 7 cut(s) 48, 64, 495, 642, 783, 970, 1026
AluBI AGCT 5 cut(s) 520, 541, 622, 822, 1118
AluI AGCT 5 cut(s) 520, 541, 622, 822, 1118
Alw21I GWGCWC 2 cut(s) 522, 1138
Alw26I GTCTC 4 cut(s) 37, 221, 740, 1044
AlwI GGATC 1 cut(s) 1181
Ama87I CYCGRG 2 cut(s) 34, 118
AoxI GGCC 6 cut(s) 51, 160, 432, 640, 666, 747
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 2 cut(s) 299, 361
AsiGI ACCGGT 1 cut(s) 371
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 161, 369, 640
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 4 cut(s) 8, 149, 386, 1186
AsuNHI GCTAGC 1 cut(s) 502
AvaI CYCGRG 2 cut(s) 34, 118
AvaII GGWCC 1 cut(s) 369
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 2 cut(s) 41, 522
BbsI GAAGAC 2 cut(s) 5, 11
Bbv12I GWGCWC 2 cut(s) 522, 1138
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 1 cut(s) 262
BccI CCATC 6 cut(s) 322, 460, 565, 882, 1089, 1148
BciT130I CCWGG 7 cut(s) 50, 66, 497, 644, 785, 972, 1028
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 4 cut(s) 37, 221, 740, 1044
BfaI CTAG 5 cut(s) 246, 503, 623, 756, 812
BglII AGATCT 2 cut(s) 89, 691
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 8 cut(s) 50, 66, 267, 497, 644, 785, 972, 1028
Bme18I GGWCC 1 cut(s) 369
BmeT110I CYCGRG 2 cut(s) 34, 118
BmgT120I GGNCC 3 cut(s) 161, 369, 640
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 8 cut(s) 50, 66, 267, 497, 644, 785, 972, 1028
BmsI GCATC 3 cut(s) 205, 901, 952
BmtI GCTAGC 1 cut(s) 506
BoxI GACNNNNGTC 1 cut(s) 1181
BpiI GAAGAC 2 cut(s) 5, 11
BplI GAGNNNNNCTC 4 cut(s) 214, 246, 476, 508
BpmI CTGGAG 3 cut(s) 665, 716, 1098
Bpu10I CCTNAGC 4 cut(s) 20, 521, 1119, 1170
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 740
BsaJI CCNNGG 6 cut(s) 48, 64, 117, 240, 495, 750
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 649, 946
Bse118I RCCGGY 1 cut(s) 371
BseBI CCWGG 7 cut(s) 50, 66, 497, 644, 785, 972, 1028
BseDI CCNNGG 6 cut(s) 48, 64, 117, 240, 495, 750
BseGI GGATG 2 cut(s) 807, 893
BseLI CCNNNNNNNGG 3 cut(s) 246, 649, 946
BseMII CTCAG 6 cut(s) 535, 551, 670, 751, 764, 1110
BseRI GAGGAG 2 cut(s) 155, 1032
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 541
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 6 cut(s) 53, 162, 434, 642, 668, 749
BshTI ACCGGT 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 522, 1138
BsiHKCI CYCGRG 2 cut(s) 34, 118
BsiSI CCGG 2 cut(s) 266, 372
BslFI GGGAC 2 cut(s) 335, 382
BslI CCNNNNNNNGG 3 cut(s) 246, 649, 946
BsmAI GTCTC 4 cut(s) 37, 221, 740, 1044
BsmBI CGTCTC 1 cut(s) 1044
BsmFI GGGAC 2 cut(s) 335, 382
BsnI GGCC 6 cut(s) 53, 162, 434, 642, 668, 749
Bso31I GGTCTC 1 cut(s) 740
BsoBI CYCGRG 2 cut(s) 34, 118
Bsp1286I GDGCHC 3 cut(s) 41, 522, 1138
Bsp143I GATC 5 cut(s) 84, 89, 616, 691, 1186
BspACI CCGC 2 cut(s) 470, 1035
BspANI GGCC 6 cut(s) 53, 162, 434, 642, 668, 749
BspCNI CTCAG 6 cut(s) 534, 550, 669, 750, 765, 1111
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 1 cut(s) 370
BspOI GCTAGC 1 cut(s) 506
BspPI GGATC 1 cut(s) 1181
BspTNI GGTCTC 1 cut(s) 740
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 6 cut(s) 48, 64, 117, 240, 495, 750
BssMI GATC 5 cut(s) 84, 89, 616, 691, 1186
BssT1I CCWWGG 2 cut(s) 240, 750
Bst2UI CCWGG 7 cut(s) 50, 66, 497, 644, 785, 972, 1028
Bst4CI ACNGT 3 cut(s) 281, 767, 1013
BstC8I GCNNGC 2 cut(s) 504, 1033
BstENI CCTNNNNNAGG 1 cut(s) 647
BstF5I GGATG 2 cut(s) 807, 893
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 5 cut(s) 87, 92, 619, 694, 1189
BstMAI GTCTC 4 cut(s) 37, 221, 740, 1044
BstMBI GATC 5 cut(s) 84, 89, 616, 691, 1186
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 7 cut(s) 50, 66, 497, 644, 785, 972, 1028
BstNSI RCATGY 1 cut(s) 12
BstPAI GACNNNNGTC 1 cut(s) 1181
BstSCI CCNGG 8 cut(s) 48, 64, 265, 495, 642, 783, 970, 1026
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 5, 11
BstX2I RGATCY 2 cut(s) 89, 691
BstYI RGATCY 2 cut(s) 89, 691
BsuRI GGCC 6 cut(s) 53, 162, 434, 642, 668, 749
BtsCI GGATG 2 cut(s) 807, 893
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 3 cut(s) 837, 1018, 1101
Cac8I GCNNGC 2 cut(s) 504, 1033
CciI TCATGA 1 cut(s) 991
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 3 cut(s) 161, 369, 640
Csp6I GTAC 3 cut(s) 799, 835, 1067
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 3 cut(s) 9, 325, 992
CviQI GTAC 3 cut(s) 799, 835, 1067
DpnI GATC 5 cut(s) 86, 91, 618, 693, 1188
DpnII GATC 5 cut(s) 84, 89, 616, 691, 1186
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 432
EciI GGCGGA 1 cut(s) 485
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 2 cut(s) 240, 750
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 2 cut(s) 41, 522
Eco31I GGTCTC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 2 cut(s) 614, 906
Eco88I CYCGRG 2 cut(s) 34, 118
EcoICRI GAGCTC 1 cut(s) 520
EcoNI CCTNNNNNAGG 1 cut(s) 647
EcoO109I RGGNCCY 2 cut(s) 161, 640
EcoRII CCWGG 7 cut(s) 48, 64, 495, 642, 783, 970, 1026
EcoT14I CCWWGG 2 cut(s) 240, 750
EcoT38I GRGCYC 2 cut(s) 41, 522
ErhI CCWWGG 2 cut(s) 240, 750
Esp3I CGTCTC 1 cut(s) 1044
FaeI CATG 3 cut(s) 12, 328, 995
FaiI YATR 9 cut(s) 10, 209, 315, 326, 354, 455, 884, 917, 993
FaqI GGGAC 2 cut(s) 335, 382
FatI CATG 3 cut(s) 8, 324, 991
FauI CCCGC 1 cut(s) 1028
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 2 cut(s) 198, 1023
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 2 cut(s) 794, 900
FriOI GRGCYC 2 cut(s) 41, 522
Fsp4HI GCNGC 1 cut(s) 251
FspAI RTGCGCAY 1 cut(s) 273
FspBI CTAG 5 cut(s) 246, 503, 623, 756, 812
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 251
GsaI CCCAGC 1 cut(s) 545
GsuI CTGGAG 3 cut(s) 665, 716, 1098
HaeIII GGCC 6 cut(s) 53, 162, 434, 642, 668, 749
HapII CCGG 2 cut(s) 266, 372
HhaI GCGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 12, 328, 995
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 4 cut(s) 199, 259, 289, 1024
HindII GTYRAC 4 cut(s) 199, 259, 289, 1024
HinfI GANTC 9 cut(s) 101, 229, 395, 445, 478, 491, 535, 788, 1020
HpaII CCGG 2 cut(s) 266, 372
HphI GGTGA 4 cut(s) 8, 149, 386, 1186
Hpy166II GTNNAC 6 cut(s) 199, 259, 289, 377, 837, 1024
Hpy188I TCNGA 6 cut(s) 89, 168, 310, 774, 829, 925
Hpy188III TCNNGA 7 cut(s) 34, 120, 296, 482, 695, 739, 992
Hpy8I GTNNAC 6 cut(s) 199, 259, 289, 377, 837, 1024
Hpy99I CGWCG 1 cut(s) 1079
HpyAV CCTTC 5 cut(s) 589, 643, 871, 930, 951
HpyCH4III ACNGT 3 cut(s) 281, 767, 1013
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 148, 678, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 12, 328, 995
HspAI GCGC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 5 cut(s) 84, 89, 616, 691, 1186
LmnI GCTCC 2 cut(s) 517, 741
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 3 cut(s) 205, 901, 952
MaeI CTAG 5 cut(s) 246, 503, 623, 756, 812
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 761, 949, 1174
MalI GATC 5 cut(s) 86, 91, 618, 693, 1188
MboI GATC 5 cut(s) 84, 89, 616, 691, 1186
MboII GAAGA 9 cut(s) 5, 16, 141, 181, 184, 224, 454, 565, 1163
MflI RGATCY 2 cut(s) 89, 691
MhlI GDGCHC 3 cut(s) 41, 522, 1138
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 4 cut(s) 299, 361, 436, 456
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 4 cut(s) 223, 485, 529, 1029
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MseI TTAA 2 cut(s) 636, 663
Msp20I TGGCCA 1 cut(s) 434
MspA1I CMGCKG 2 cut(s) 541, 1118
MspI CCGG 2 cut(s) 266, 372
MspR9I CCNGG 8 cut(s) 50, 66, 267, 497, 644, 785, 972, 1028
MvaI CCWGG 7 cut(s) 50, 66, 497, 644, 785, 972, 1028
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 267
NdeII GATC 5 cut(s) 84, 89, 616, 691, 1186
NheI GCTAGC 1 cut(s) 502
NlaIII CATG 3 cut(s) 12, 328, 995
NlaIV GGNNCC 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 1174
NsbI TGCGCA 1 cut(s) 273
NspI RCATGY 1 cut(s) 12
PaeR7I CTCGAG 1 cut(s) 34
PagI TCATGA 1 cut(s) 991
PceI AGGCCT 1 cut(s) 53
PciI ACATGT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 1059
PfeI GAWTC 5 cut(s) 101, 395, 445, 478, 788
PfoI TCCNGGA 1 cut(s) 783
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 4 cut(s) 223, 485, 529, 1028
PpsI GAGTC 4 cut(s) 223, 485, 529, 1028
PscI ACATGT 1 cut(s) 8
PshAI GACNNNNGTC 1 cut(s) 1181
Psp124BI GAGCTC 1 cut(s) 522
Psp6I CCWGG 7 cut(s) 48, 64, 495, 642, 783, 970, 1026
PspFI CCCAGC 1 cut(s) 541
PspGI CCWGG 7 cut(s) 48, 64, 495, 642, 783, 970, 1026
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 3 cut(s) 161, 369, 640
PsuI RGATCY 2 cut(s) 89, 691
PvuII CAGCTG 2 cut(s) 541, 1118
RsaI GTAC 3 cut(s) 800, 836, 1068
RsaNI GTAC 3 cut(s) 799, 835, 1067
SacI GAGCTC 1 cut(s) 522
SalI GTCGAC 2 cut(s) 197, 1022
SaqAI TTAA 2 cut(s) 636, 663
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 5 cut(s) 84, 89, 616, 691, 1186
Sau96I GGNCC 3 cut(s) 161, 369, 640
SchI GAGTC 4 cut(s) 223, 485, 529, 1029
ScrFI CCNGG 8 cut(s) 50, 66, 267, 497, 644, 785, 972, 1028
SduI GDGCHC 3 cut(s) 41, 522, 1138
SfaNI GCATC 3 cut(s) 205, 901, 952
Sfr274I CTCGAG 1 cut(s) 34
SinI GGWCC 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 34, 380
SmoI CTYRAG 2 cut(s) 34, 380
Sse9I AATT 4 cut(s) 299, 361, 436, 456
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 2 cut(s) 470, 1035
SspMI CTAG 5 cut(s) 246, 503, 623, 756, 812
SstI GAGCTC 1 cut(s) 522
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 8 cut(s) 48, 64, 265, 495, 642, 783, 970, 1026
StyI CCWWGG 2 cut(s) 240, 750
TaaI ACNGT 3 cut(s) 281, 767, 1013
TaiI ACGT 1 cut(s) 294
TaqI TCGA 5 cut(s) 35, 198, 1023, 1062, 1185
TasI AATT 4 cut(s) 299, 361, 436, 456
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 5 cut(s) 101, 395, 445, 478, 788
Tru1I TTAA 2 cut(s) 636, 663
Tru9I TTAA 2 cut(s) 636, 663
TscAI CASTG 3 cut(s) 844, 1018, 1108
TseFI GTSAC 1 cut(s) 1174
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 1174
TspDTI ATGAA 3 cut(s) 17, 1008, 1176
TspRI CASTG 3 cut(s) 844, 1018, 1108
VpaK11BI GGWCC 1 cut(s) 369
XagI CCTNNNNNAGG 1 cut(s) 647
XapI RAATTY 2 cut(s) 299, 361
XceI RCATGY 1 cut(s) 12
XhoI CTCGAG 1 cut(s) 34
XmiI GTMKAC 2 cut(s) 198, 1023
XspI CTAG 5 cut(s) 246, 503, 623, 756, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.