Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

46466611 .. 46466981

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGATTGTCGTGGAAGAGAATTTGAAGAGGCTTGGGATAGCAGCTCCAGCCATAAGGGCCAATTGTGCCCAGACCCTTGGTCCCTCTAATGAAGGCATGTCTTCACCTAGGCCCCCAAGTCCCAAGTTTAGGGCACGACCACCCAAGCCTCCATCACCCCCTGGATTTAGGAGGACAACAATCAGATCTCCCATCGATTCATTTGAAAAAGCTTCAGGAAAAAGGAAAATGAGTGAGGAGGCGCGGGATAAGCAAAACCCTGCGAAGAAGAACATGAGGGTGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.6

Weight (kDa)

10.7

Isoelectric Point (pI)

88.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	25, 206
AhdI	GACNNNNNGTC	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	44, 212
AluI	AGCT	2 cut(s)	44, 212
AoxI	GGCC	2 cut(s)	57, 110
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	19
AspA2I	CCTAGG	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	57, 80, 111
AsuHPI	GGTGA	2 cut(s)	96, 147
AvaII	GGWCC	1 cut(s)	80
AvrII	CCTAGG	1 cut(s)	107
BaeGI	GKGCMC	2 cut(s)	70, 136
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	160, 200
BciT130I	CCWGG	1 cut(s)	162
BfaI	CTAG	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	56
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	1 cut(s)	42
BlnI	CCTAGG	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	80
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	57, 80, 111
BmiI	GGNNCC	2 cut(s)	82, 113
BmrFI	CCNGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	76, 107, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	76, 107, 160
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	2 cut(s)	70, 136
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	59, 112
BshVI	ATCGAT	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	66, 105
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	66, 105
BsnI	GGCC	2 cut(s)	59, 112
Bsp1286I	GDGCHC	2 cut(s)	70, 136
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	2 cut(s)	59, 112
BspDI	ATCGAT	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	82, 113
BssECI	CCNNGG	3 cut(s)	76, 107, 160
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	76, 107
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	9, 20
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 56, 65, 250
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	2 cut(s)	70, 136
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	59, 112
BsuTUI	ATCGAT	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	57, 80, 111
ClaI	ATCGAT	1 cut(s)	195
CviAII	CATG	2 cut(s)	97, 274
CviJI	RGCY	7 cut(s)	31, 44, 50, 59, 112, 148, 212
CviKI_1	RGCY	7 cut(s)	31, 44, 50, 59, 112, 148, 212
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DriI	GACNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	9, 20
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	2 cut(s)	9, 20
Eco130I	CCWWGG	2 cut(s)	76, 107
Eco47I	GGWCC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	76, 107
ErhI	CCWWGG	2 cut(s)	76, 107
FaeI	CATG	2 cut(s)	100, 277
FaiI	YATR	3 cut(s)	53, 98, 275
FaqI	GGGAC	2 cut(s)	66, 105
FatI	CATG	2 cut(s)	96, 273
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	59, 112
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	100, 277
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	197
HphI	GGTGA	2 cut(s)	96, 147
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 56, 65, 250
Hsp92II	CATG	2 cut(s)	100, 277
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	6 cut(s)	60, 83, 147, 174, 201, 273
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	108
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	5 cut(s)	26, 37, 93, 277, 280
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	2 cut(s)	70, 136
MluCI	AATT	2 cut(s)	19, 61
MnlI	CCTC	7 cut(s)	21, 94, 159, 165, 229, 232, 270
MslI	CAYNNNNRTG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	4 cut(s)	47, 56, 65, 250
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	100, 277
NlaIV	GGNNCC	2 cut(s)	82, 113
NspI	RCATGY	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	82, 113
PspPI	GGNCC	3 cut(s)	57, 80, 111
PsuI	RGATCY	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	278
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	3 cut(s)	57, 80, 111
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	2 cut(s)	70, 136
SetI	ASST	3 cut(s)	46, 109, 214
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	19, 61
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	2 cut(s)	76, 107
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	19, 61
TfiI	GAWTC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	105, 189
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.