Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

3628362 .. 3629210

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG050600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGTGAGGAGGTGCAGGGTAAGCAAGATCCCCTGAAGAAGAAAACGAGGGTGGATGACGAGGCTGACAATCTCATGGAAGATGCGAAGAAGGAGACTCGGCAGTCCAAGGCTAGGCAGCGAGTTGACACTCCGGGTGTGCACCACCGTCAAGTTGACGTTCCAGAGTTTCTTTCTGATTATGTTGGGGACATGATGGGGCTTGTCGATACTAAGACTTATACCGCAAATTTTGGGACGGGTGAACTCGAAGGAGAACTTGATTCCCTTGTGGAAGGGGCTAAGAGTTCTTTGATTTTGGCCAATTTGAAGAATCATCTCATAATTGACAAGATGGCGGAGAGGATTCGTGACTTGGACTCCCAGGTGCTTGCAATCAATAAGGAGCTCAGGGCGACCAAGACTCAGCTGGGTCAAAAGAAGAAAGATGTGGCTAAAATGGAGGATTATCACAAAAAGCTTAAGGAGAAAGAAACAGAGGTTGACCAGCTGGGAGAAAAGGTTAAGGGCCTGGAGAAGGAACTCAGGGTTAAGGCCAAAGAGTGTAAGAAAAACAAGGATTTGGAGGTGGAAGTCCAAGACCTTAGAGAGAGGTTTGAGGGTCTCAGGGGCAAGGCCAGGGTTGGTCGTAACAACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.3

Weight (kDa)

7.75

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AciI	CCGC	2 cut(s)	225, 338
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	114, 517
AflII	CTTAAG	1 cut(s)	461
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	3 cut(s)	363, 510, 617
AluBI	AGCT	4 cut(s)	388, 409, 460, 490
AluI	AGCT	4 cut(s)	388, 409, 460, 490
Alw21I	GWGCWC	2 cut(s)	144, 390
Alw26I	GTCTC	2 cut(s)	89, 608
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	4 cut(s)	300, 508, 534, 615
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	144, 390
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	2 cut(s)	190, 328
BciT130I	CCWGG	3 cut(s)	365, 512, 619
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	89, 608
BfaI	CTAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	461
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	4 cut(s)	135, 365, 512, 619
BmgT120I	GGNCC	1 cut(s)	508
BmrFI	CCNGG	4 cut(s)	135, 365, 512, 619
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	108, 363, 618
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 517
BseBI	CCWGG	3 cut(s)	365, 512, 619
BseDI	CCNNGG	3 cut(s)	108, 363, 618
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	114, 517
BseMII	CTCAG	4 cut(s)	403, 419, 538, 619
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	2 cut(s)	409, 490
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	302, 510, 536, 617
BsiHKAI	GWGCWC	2 cut(s)	144, 390
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	2 cut(s)	203, 250
BslI	CCNNNNNNNGG	2 cut(s)	114, 517
BsmAI	GTCTC	2 cut(s)	89, 608
BsmFI	GGGAC	2 cut(s)	203, 250
BsnI	GGCC	4 cut(s)	302, 510, 536, 617
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	144, 390
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	225, 338
BspANI	GGCC	4 cut(s)	302, 510, 536, 617
BspCNI	CTCAG	4 cut(s)	402, 418, 537, 618
BspPI	GGATC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	608
BssECI	CCNNGG	3 cut(s)	108, 363, 618
BssMI	GATC	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	365, 512, 619
Bst4CI	ACNGT	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	7 cut(s)	213, 282, 389, 405, 524, 584, 605
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	2 cut(s)	89, 608
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	3 cut(s)	365, 512, 619
BstSCI	CCNGG	4 cut(s)	133, 363, 510, 617
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	4 cut(s)	302, 510, 536, 617
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	508
CviAII	CATG	2 cut(s)	76, 193
DdeI	CTNAG	7 cut(s)	213, 282, 389, 405, 524, 584, 605
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	363, 510, 617
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	79, 196
FaiI	YATR	5 cut(s)	77, 183, 194, 222, 323
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	2 cut(s)	203, 250
FatI	CATG	2 cut(s)	75, 192
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	119
GsaI	CCCAGC	2 cut(s)	413, 494
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	4 cut(s)	302, 510, 536, 617
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	2 cut(s)	79, 196
HincII	GTYRAC	3 cut(s)	127, 157, 484
HindII	GTYRAC	3 cut(s)	127, 157, 484
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	6 cut(s)	97, 263, 313, 346, 359, 403
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	5 cut(s)	127, 142, 157, 245, 484
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	164, 350
Hpy8I	GTNNAC	5 cut(s)	127, 142, 157, 245, 484
HpyAV	CCTTC	4 cut(s)	85, 245, 269, 511
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	16, 142, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	7 cut(s)	213, 282, 389, 405, 524, 584, 605
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	79, 196
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	350, 629
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	6 cut(s)	49, 52, 92, 100, 322, 433
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	144, 390
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	229, 304, 324
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	3 cut(s)	91, 353, 397
MnlI	CCTC	9 cut(s)	4, 42, 55, 336, 436, 472, 559, 585, 592
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	4 cut(s)	462, 504, 531, 640
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	2 cut(s)	409, 490
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	4 cut(s)	135, 365, 512, 619
MvaI	CCWGG	3 cut(s)	365, 512, 619
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	79, 196
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	263, 313, 346
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	3 cut(s)	91, 353, 397
PpsI	GAGTC	3 cut(s)	91, 353, 397
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	3 cut(s)	363, 510, 617
PspFI	CCCAGC	2 cut(s)	409, 490
PspGI	CCWGG	3 cut(s)	363, 510, 617
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	409, 490
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	462, 504, 531, 640
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	3 cut(s)	91, 353, 397
ScrFI	CCNGG	4 cut(s)	135, 365, 512, 619
SduI	GDGCHC	2 cut(s)	144, 390
SfaNI	GCATC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	229, 304, 324
SsiI	CCGC	2 cut(s)	225, 338
SspMI	CTAG	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	133, 363, 510, 617
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	207, 249
TasI	AATT	3 cut(s)	229, 304, 324
TfiI	GAWTC	3 cut(s)	263, 313, 346
Tru1I	TTAA	4 cut(s)	462, 504, 531, 640
Tru9I	TTAA	4 cut(s)	462, 504, 531, 640
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	140
XagI	CCTNNNNNAGG	1 cut(s)	515
XapI	RAATTY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.