Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

57123688 .. 57127244

Gene Structure 3557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG425200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGATGGGGATTGTTGATACTAAGACTTATACCGCAAATTTTGGGACGGGTGAACTCGAAGGAGAACTTGATTCCCTTGTGGAAGGGGCTAAGAGTTCTTTGATTTTGGCCAATTTGAAGAATCATCTCATAATTAACAAGATGGCGGAGAGGATTCGTGACTTGGACTCCCAGGTGCTTGCAATCAACAAGGAGCTCAGGGCGACCAAGATTCAGCTGGGTCAAAAGAAGAAAGATGTGGCTAAAATGGAGGATTATCACAAAAAGCTGAAGGAGAAAGAAACAGAGGTTGACCAGCTGGGAGAAAAGGTTAAGGGCCTGGAGAAGGAACTCAGGGTTAAGGCCAAAGAGTGTAAGAAAAACAAGGATTTGGAGGTGGAAGTCCAAGACCTTAGAGAGAGGTTTGAGGGTCTCAGGGGCAAGGCCAAGGCTGGTCGTAACAGTATATTGAGGGAGTTCCAGGATTCTAAAGAGTACAAGGACATCTTAGAGAATAGCTACTCAGAGGGGTATACTGACTTGCTCAACCTATGCGTAGAGCATTTTGGTGAGAAGGGTATGGAATGGGCTGTTTCATTGGGCGTTGATGTTGTGCCTTCGGAAAACAAGGGTAGTCCTTCCAAGGCTACACCTGCTGATGCAAGTCCAAGTCTTGCCCTGTCTGGCCATGAAGTTGAGGGATTGGACAGTGGGGGAGTCGACCAAGCAAGCTGGTCAGTATTGGGAGACGGACCTACTGAGGCACTGAGCGACGACCTCCAGCAAGGTAAGTCTGGCACTGGTGACACTCCGGCTGAGGACAAAGGGGGTGCTCTTGGAGATGGGGAAGATGGGGGTGAAAGGGCTAAGGTGACAAATGCCGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.38

Weight (kDa)

4.95

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
Acc36I	ACCTGC	1 cut(s)	640
AccI	GTMKAC	2 cut(s)	512, 699
AciI	CCGC	2 cut(s)	33, 146
AclWI	GGATC	1 cut(s)	857
AcoI	YGGCCR	2 cut(s)	108, 664
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	3 cut(s)	171, 318, 459
AluBI	AGCT	6 cut(s)	196, 217, 268, 298, 498, 711
AluI	AGCT	6 cut(s)	196, 217, 268, 298, 498, 711
Alw21I	GWGCWC	2 cut(s)	198, 814
Alw26I	GTCTC	2 cut(s)	416, 720
AlwI	GGATC	1 cut(s)	857
AoxI	GGCC	5 cut(s)	108, 316, 342, 423, 664
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	316, 731
AsuHPI	GGTGA	5 cut(s)	62, 560, 794, 848, 862
AvaII	GGWCC	1 cut(s)	731
BalI	TGGCCA	2 cut(s)	110, 666
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	198, 814
BbvCI	CCTCAGC	1 cut(s)	795
BccI	CCATC	3 cut(s)	136, 815, 824
BciT130I	CCWGG	3 cut(s)	173, 320, 461
BcoDI	GTCTC	2 cut(s)	416, 720
BfuAI	ACCTGC	1 cut(s)	640
Bme1390I	CCNGG	3 cut(s)	173, 320, 461
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	2 cut(s)	316, 731
BmrFI	CCNGG	3 cut(s)	173, 320, 461
BmsI	GCATC	1 cut(s)	628
BpmI	CTGGAG	2 cut(s)	341, 743
Bpu10I	CCTNAGC	3 cut(s)	197, 795, 846
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	171, 426, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	784
BseBI	CCWGG	3 cut(s)	173, 320, 461
BseDI	CCNNGG	3 cut(s)	171, 426, 621
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	7 cut(s)	211, 346, 427, 516, 729, 737, 786
BseNI	ACTGG	1 cut(s)	784
BseYI	CCCAGC	2 cut(s)	217, 298
BshFI	GGCC	5 cut(s)	110, 318, 344, 425, 666
BsiHKAI	GWGCWC	2 cut(s)	198, 814
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	416, 720
BsmBI	CGTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	5 cut(s)	110, 318, 344, 425, 666
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	198, 814
Bsp143I	GATC	1 cut(s)	862
BspACI	CCGC	2 cut(s)	33, 146
BspANI	GGCC	5 cut(s)	110, 318, 344, 425, 666
BspCNI	CTCAG	7 cut(s)	210, 345, 426, 515, 730, 738, 787
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	857
BspTNI	GGTCTC	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	784
BssECI	CCNNGG	3 cut(s)	171, 426, 621
BssMI	GATC	1 cut(s)	862
BssNAI	GTATAC	1 cut(s)	513
BssT1I	CCWWGG	2 cut(s)	426, 621
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	3 cut(s)	173, 320, 461
Bst4CI	ACNGT	2 cut(s)	443, 689
BstC8I	GCNNGC	2 cut(s)	180, 709
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstKTI	GATC	1 cut(s)	865
BstMAI	GTCTC	2 cut(s)	416, 720
BstMBI	GATC	1 cut(s)	862
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstNI	CCWGG	3 cut(s)	173, 320, 461
BstSCI	CCNGG	3 cut(s)	171, 318, 459
BstZ17I	GTATAC	1 cut(s)	513
BsuRI	GGCC	5 cut(s)	110, 318, 344, 425, 666
BtsIMutI	CAGTG	3 cut(s)	694, 743, 777
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	180, 709
Cfr13I	GGNCC	2 cut(s)	316, 731
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	668
CviQI	GTAC	1 cut(s)	475
DpnI	GATC	1 cut(s)	864
DpnII	GATC	1 cut(s)	862
EaeI	YGGCCR	2 cut(s)	108, 664
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	426, 621
Eco24I	GRGCYC	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	731
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	171, 318, 459
EcoT14I	CCWWGG	2 cut(s)	426, 621
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	426, 621
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	1 cut(s)	671
FaiI	YATR	7 cut(s)	30, 131, 446, 513, 532, 560, 669
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 470, 502
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	667
FblI	GTMKAC	2 cut(s)	512, 699
FriOI	GRGCYC	1 cut(s)	198
GsaI	CCCAGC	2 cut(s)	221, 302
GsuI	CTGGAG	2 cut(s)	341, 743
HaeIII	GGCC	5 cut(s)	110, 318, 344, 425, 666
HapII	CCGG	1 cut(s)	791
Hin1II	CATG	1 cut(s)	671
HincII	GTYRAC	2 cut(s)	292, 700
HindII	GTYRAC	2 cut(s)	292, 700
HinfI	GANTC	7 cut(s)	71, 121, 154, 167, 211, 464, 696
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	5 cut(s)	62, 560, 794, 848, 862
Hpy166II	GTNNAC	4 cut(s)	53, 292, 513, 700
Hpy188I	TCNGA	2 cut(s)	505, 601
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	4 cut(s)	53, 292, 513, 700
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	7 cut(s)	53, 77, 265, 319, 547, 606, 627
HpyCH4III	ACNGT	2 cut(s)	443, 689
HpyCH4V	TGCA	2 cut(s)	182, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
Hsp92II	CATG	1 cut(s)	671
Kzo9I	GATC	1 cut(s)	862
LmnI	GCTCC	1 cut(s)	193
LweI	GCATC	1 cut(s)	628
MaeIII	GTNAC	4 cut(s)	158, 437, 782, 850
MalI	GATC	1 cut(s)	864
MboI	GATC	1 cut(s)	862
MboII	GAAGA	3 cut(s)	130, 241, 839
MhlI	GDGCHC	2 cut(s)	198, 814
MlsI	TGGCCA	2 cut(s)	110, 666
MluCI	AATT	3 cut(s)	37, 112, 132
MluNI	TGGCCA	2 cut(s)	110, 666
MlyI	GAGTC	2 cut(s)	161, 705
Mox20I	TGGCCA	2 cut(s)	110, 666
MscI	TGGCCA	2 cut(s)	110, 666
MseI	TTAA	3 cut(s)	135, 312, 339
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	2 cut(s)	110, 666
MspA1I	CMGCKG	2 cut(s)	217, 298
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	3 cut(s)	173, 320, 461
MvaI	CCWGG	3 cut(s)	173, 320, 461
MwoI	GCNNNNNNNGC	1 cut(s)	632
NdeII	GATC	1 cut(s)	862
NlaIII	CATG	1 cut(s)	671
NmuCI	GTSAC	3 cut(s)	158, 782, 850
PaqCI	CACCTGC	1 cut(s)	640
PfeI	GAWTC	5 cut(s)	71, 121, 154, 211, 464
PfoI	TCCNGGA	1 cut(s)	459
PleI	GAGTC	2 cut(s)	161, 704
PpsI	GAGTC	2 cut(s)	161, 704
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	171, 318, 459
PspFI	CCCAGC	2 cut(s)	217, 298
PspGI	CCWGG	3 cut(s)	171, 318, 459
PspPI	GGNCC	2 cut(s)	316, 731
PvuII	CAGCTG	2 cut(s)	217, 298
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	698
SaqAI	TTAA	3 cut(s)	135, 312, 339
Sau3AI	GATC	1 cut(s)	862
Sau96I	GGNCC	2 cut(s)	316, 731
SchI	GAGTC	2 cut(s)	161, 705
ScrFI	CCNGG	3 cut(s)	173, 320, 461
SduI	GDGCHC	2 cut(s)	198, 814
SfaNI	GCATC	1 cut(s)	628
SinI	GGWCC	1 cut(s)	731
SmiMI	CAYNNNNRTG	1 cut(s)	546
Sse9I	AATT	3 cut(s)	37, 112, 132
SsiI	CCGC	2 cut(s)	33, 146
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	171, 318, 459
StyI	CCWWGG	2 cut(s)	426, 621
TaaI	ACNGT	2 cut(s)	443, 689
TaqI	TCGA	2 cut(s)	57, 699
TasI	AATT	3 cut(s)	37, 112, 132
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	5 cut(s)	71, 121, 154, 211, 464
Tru1I	TTAA	3 cut(s)	135, 312, 339
Tru9I	TTAA	3 cut(s)	135, 312, 339
TscAI	CASTG	3 cut(s)	694, 750, 784
TseFI	GTSAC	3 cut(s)	158, 782, 850
Tsp45I	GTSAC	3 cut(s)	158, 782, 850
TspDTI	ATGAA	2 cut(s)	564, 684
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	694, 750, 784
VpaK11BI	GGWCC	1 cut(s)	731
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	2 cut(s)	512, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.