Rroxscaffold_2G00155200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004212
Physical Location & Seq
Forward (+)
91591964 .. 91593237
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155200.1

Sequence Viewer

Length: 465 bp
ATGAGTGAGGAGGTGCGGGGTAAGCAAGACCCTCCGAAGAAGAAAACGAGGGTGGATGACGAGGGCGACAATCTCAATGAAGATGCGAAGAAGGAGACTCGGCGGTCCAAGGCTAGGCGGCGAGCCAATTTGAAGAATCATCTTATAATTGACAAGATGGCGGAGAGGATTCGTGACTTGGACTCCCAGTGCTTGCAATCAACAAGGAGCTCGGGGCGACCAAGACTCGACTGGGTCAAAAGAAGAAAGATGTGGCTAAAATGGAGGAATATCACAAAAAGCTTAAGGAGAAAGAAACGAGAGGTTGACCAGTGGGAGAAAAGGTTAAGGGCCTGGAGAAGGAACTCGGGGTTAAGGCCAAAGAGTGTAAGAAAAACAAGGATTTGGAGGTGGAAGTCCAAGACCTTAGAGAGAGGTTTGAGGGTCTCGGGGGCAAGGCCAAGGCTGGTCGTAACGGTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

18.73

Weight (kDa)

11.6

Isoelectric Point (pI)

79.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AasI GACNNNNNNGTC 1 cut(s) 103
AciI CCGC 4 cut(s) 16, 103, 118, 161
AfiI CCNNNNNNNGG 2 cut(s) 114, 339
AflII CTTAAG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 2 cut(s) 210, 282
AluI AGCT 2 cut(s) 210, 282
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 89, 430
Ama87I CYCGRG 3 cut(s) 211, 346, 427
AoxI GGCC 3 cut(s) 330, 356, 437
AspS9I GGNCC 2 cut(s) 105, 330
AvaI CYCGRG 3 cut(s) 211, 346, 427
AvaII GGWCC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 212
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 89, 430
BfaI CTAG 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 283
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 3 cut(s) 211, 346, 427
BmgT120I GGNCC 2 cut(s) 105, 330
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 2 cut(s) 181, 241
BmsI GCATC 1 cut(s) 73
BmuI ACTGGG 2 cut(s) 181, 241
BpmI CTGGAG 1 cut(s) 355
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 108, 440
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 339
Bse1I ACTGG 3 cut(s) 187, 236, 310
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 108, 440
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 114, 339
BseNI ACTGG 3 cut(s) 187, 236, 310
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 3 cut(s) 332, 358, 439
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 3 cut(s) 211, 346, 427
BslI CCNNNNNNNGG 2 cut(s) 114, 339
BsmAI GTCTC 2 cut(s) 89, 430
BsnI GGCC 3 cut(s) 332, 358, 439
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 3 cut(s) 211, 346, 427
Bsp1286I GDGCHC 1 cut(s) 212
BspACI CCGC 4 cut(s) 16, 103, 118, 161
BspANI GGCC 3 cut(s) 332, 358, 439
BspTI CTTAAG 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 430
BsrI ACTGG 3 cut(s) 187, 236, 310
BssECI CCNNGG 2 cut(s) 108, 440
BssT1I CCWWGG 2 cut(s) 108, 440
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 457
BstAFI CTTAAG 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 123, 194
BstDEI CTNAG 1 cut(s) 406
BstENI CCTNNNNNAGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 61
BstMAI GTCTC 2 cut(s) 89, 430
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 332
BsuRI GGCC 3 cut(s) 332, 358, 439
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 194, 317
Cac8I GCNNGC 2 cut(s) 123, 194
Cfr13I GGNCC 2 cut(s) 105, 330
CviJI RGCY 9 cut(s) 113, 125, 210, 256, 282, 332, 358, 439, 445
CviKI_1 RGCY 9 cut(s) 113, 125, 210, 256, 282, 332, 358, 439, 445
DdeI CTNAG 1 cut(s) 406
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 108, 440
Eco24I GRGCYC 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 210
Eco88I CYCGRG 3 cut(s) 211, 346, 427
EcoICRI GAGCTC 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 108, 440
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 2 cut(s) 108, 440
FaiI YATR 2 cut(s) 146, 460
FauI CCCGC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 3 cut(s) 332, 358, 439
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 5 cut(s) 97, 136, 169, 182, 225
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 85, 333
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 406
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 6 cut(s) 200, 217, 319, 323, 346, 431
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 173, 451
MboII GAAGA 6 cut(s) 49, 52, 92, 100, 145, 255
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 127, 147
MlyI GAGTC 3 cut(s) 91, 176, 219
MseI TTAA 3 cut(s) 284, 326, 353
MspCI CTTAAG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 22
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 136, 169
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 3 cut(s) 91, 176, 219
PpsI GAGTC 3 cut(s) 91, 176, 219
PsiI TTATAA 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspPI GGNCC 2 cut(s) 105, 330
PsyI GACNNNGTC 1 cut(s) 233
SacI GAGCTC 1 cut(s) 212
SaqAI TTAA 3 cut(s) 284, 326, 353
SatI GCNGC 1 cut(s) 119
Sau96I GGNCC 2 cut(s) 105, 330
SchI GAGTC 3 cut(s) 91, 176, 219
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 1 cut(s) 212
SetI ASST 8 cut(s) 15, 212, 284, 306, 326, 392, 407, 418
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 2 cut(s) 127, 147
SsiI CCGC 4 cut(s) 16, 103, 118, 161
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 108, 440
TaaI ACNGT 1 cut(s) 457
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 127, 147
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 2 cut(s) 136, 169
Tru1I TTAA 3 cut(s) 284, 326, 353
Tru9I TTAA 3 cut(s) 284, 326, 353
TscAI CASTG 2 cut(s) 194, 317
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 2 cut(s) 194, 317
Tth111I GACNNNGTC 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 105
XagI CCTNNNNNAGG 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.