Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

19427572 .. 19428979

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGGAGAGGATTCGTGAGTTGGACTCCCAGGTGCTTGCAATCAACAAGGAGCTCAGGGCCACCAAGACTCAGCTGGGTCAAAAGAAGAAAGATGTGGCAAAAATGGAGGATTATCACAAAAAGCTTAAGGAAAAAGAAACAGAGGTTGACCAGCTGAGAGAAAAGGTTAAGGGCCTGGAGAAGGAACTCAAGGTTAAGGCCAAAGAGTGTAAGAAAAACAAGGACTTAGAGGTGGAAGTCCAAGGCCTTAGAGAGAGGGTTGAGGGTCTCAGGAGCAAGGCCAAGGTTGGTCGTAACAGTATATTGAGGGAGTTTCAGGATTCTAAAAAGTACAAGGACATCTTAGAGAATAGCTGCTCAGAGGGGTATACTGACTTGCTCAACCAATGTGTAGAGCATTTTGGTGAGAAGGGTATGGAATGGGCAATTTCTTTGGGCATTGATGCTGCGCCTTCAGAAAACAAAGGTAGCCCTTCCAAGGCTACACCTGCTGATACAAGTCCAGCTCTTGCCCTGTCTGGCCATGAATTTGAGGGATTGGACAGTGGAGGAGTCGACCAGGCAAGCGGGTCAGTACTGGGAGACGAACCTACTGAGGCACTAAGCGACGACCACCAGCAAGGTAAGTCTGGCACTAGTGACACTCCAACTGAGGACAAAGGAGGTGCTCTTGGAGATGGAGAAGATGGAGATGAAAGGGCTAAGAATCGTGTTGTGGATATCTGGCCATTAGCCTTGGTAGGTCTAGTTTCTTTTATTTGGGCTCCCGCCGGGGCAGGCTCCATCCTACTTTTCTGTTTAGCACTTATACCAAACTCAAATAGAATTTTTGTTGAAATAGCTCTACCCTTGAGGTTCTGGCAAGCTTATTTGAGTTCGCGTATGGGTGGATATGTGGAATGGGTACCTCACTTGGTCCGCGTCTGGGCATTGACATTAGTTTGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

34.94

Weight (kDa)

5.5

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
Acc65I	GGTACC	1 cut(s)	907
AccB1I	GGYRCC	1 cut(s)	907
AccI	GTMKAC	2 cut(s)	371, 558
AccII	CGCG	2 cut(s)	883, 924
AciI	CCGC	4 cut(s)	5, 570, 771, 922
AcoI	YGGCCR	2 cut(s)	523, 728
AcsI	RAATTY	2 cut(s)	530, 828
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	3 cut(s)	335, 579, 909
AfiI	CCNNNNNNNGG	3 cut(s)	184, 481, 928
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	839
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	3 cut(s)	30, 177, 561
AluBI	AGCT	8 cut(s)	55, 76, 127, 157, 357, 509, 845, 869
AluI	AGCT	8 cut(s)	55, 76, 127, 157, 357, 509, 845, 869
Alw21I	GWGCWC	2 cut(s)	57, 673
Alw26I	GTCTC	2 cut(s)	275, 579
AoxI	GGCC	7 cut(s)	60, 175, 201, 247, 282, 523, 728
ApeKI	GCWGC	2 cut(s)	357, 449
ApoI	RAATTY	2 cut(s)	530, 828
Asp718I	GGTACC	1 cut(s)	907
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	3 cut(s)	60, 175, 919
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	919
BalI	TGGCCA	2 cut(s)	525, 730
BanI	GGYRCC	1 cut(s)	907
BanII	GRGCYC	2 cut(s)	57, 769
Bbv12I	GWGCWC	2 cut(s)	57, 673
BbvI	GCAGC	2 cut(s)	344, 436
BccI	CCATC	3 cut(s)	674, 683, 794
BciT130I	CCWGG	3 cut(s)	32, 179, 563
BcnI	CCSGG	1 cut(s)	775
BcoDI	GTCTC	2 cut(s)	275, 579
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	639, 749
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	2 cut(s)	358, 450
BlsI	GCNGC	2 cut(s)	359, 451
BmcAI	AGTACT	1 cut(s)	579
Bme1390I	CCNGG	4 cut(s)	32, 179, 563, 775
Bme18I	GGWCC	1 cut(s)	919
BmgT120I	GGNCC	3 cut(s)	60, 175, 919
BmiI	GGNNCC	3 cut(s)	768, 784, 909
BmrFI	CCNGG	4 cut(s)	32, 179, 563, 775
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	176, 874
BpuMI	CCSGG	1 cut(s)	775
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	6 cut(s)	30, 244, 285, 480, 738, 774
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 481, 928
Bse1I	ACTGG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	32, 179, 563
BseDI	CCNNGG	6 cut(s)	30, 244, 285, 480, 738, 774
BseGI	GGATG	1 cut(s)	786
BseLI	CCNNNNNNNGG	3 cut(s)	184, 481, 928
BseMII	CTCAG	7 cut(s)	70, 86, 149, 286, 375, 588, 645
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	344, 436
BseYI	CCCAGC	1 cut(s)	76
Bsh1236I	CGCG	2 cut(s)	883, 924
BshFI	GGCC	7 cut(s)	62, 177, 203, 249, 284, 525, 730
BshNI	GGYRCC	1 cut(s)	907
BsiHKAI	GWGCWC	2 cut(s)	57, 673
BsiSI	CCGG	1 cut(s)	774
BslI	CCNNNNNNNGG	3 cut(s)	184, 481, 928
BsmAI	GTCTC	2 cut(s)	275, 579
BsmBI	CGTCTC	1 cut(s)	579
BsnI	GGCC	7 cut(s)	62, 177, 203, 249, 284, 525, 730
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	3 cut(s)	57, 673, 769
BspACI	CCGC	4 cut(s)	5, 570, 771, 922
BspANI	GGCC	7 cut(s)	62, 177, 203, 249, 284, 525, 730
BspCNI	CTCAG	7 cut(s)	69, 85, 150, 285, 374, 589, 646
BspFNI	CGCG	2 cut(s)	883, 924
BspLI	GGNNCC	3 cut(s)	768, 784, 909
BspMI	ACCTGC	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	907
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	6 cut(s)	30, 244, 285, 480, 738, 774
BssNAI	GTATAC	1 cut(s)	372
BssT1I	CCWWGG	4 cut(s)	244, 285, 480, 738
Bst1107I	GTATAC	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	32, 179, 563
Bst4CI	ACNGT	2 cut(s)	302, 548
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	4 cut(s)	39, 568, 781, 867
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	786
BstFNI	CGCG	2 cut(s)	883, 924
BstHHI	GCGC	1 cut(s)	454
BstMAI	GTCTC	2 cut(s)	275, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	3 cut(s)	32, 179, 563
BstSCI	CCNGG	4 cut(s)	30, 177, 561, 773
BstUI	CGCG	2 cut(s)	883, 924
BstV1I	GCAGC	2 cut(s)	344, 436
BstZ17I	GTATAC	1 cut(s)	372
BsuRI	GGCC	7 cut(s)	62, 177, 203, 249, 284, 525, 730
BtsCI	GGATG	1 cut(s)	786
BtsIMutI	CAGTG	1 cut(s)	553
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	4 cut(s)	39, 568, 781, 867
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	60, 175, 919
CseI	GACGC	1 cut(s)	913
Csp6I	GTAC	3 cut(s)	334, 578, 908
CviAII	CATG	1 cut(s)	527
CviQI	GTAC	3 cut(s)	334, 578, 908
EaeI	YGGCCR	2 cut(s)	523, 728
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	4 cut(s)	244, 285, 480, 738
Eco147I	AGGCCT	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	57, 769
Eco31I	GGTCTC	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	919
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	30, 177, 561
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	4 cut(s)	244, 285, 480, 738
EcoT38I	GRGCYC	2 cut(s)	57, 769
ErhI	CCWWGG	4 cut(s)	244, 285, 480, 738
Esp3I	CGTCTC	1 cut(s)	579
FaeI	CATG	1 cut(s)	530
FaiI	YATR	7 cut(s)	305, 372, 419, 528, 812, 887, 897
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	1 cut(s)	526
FauI	CCCGC	2 cut(s)	563, 778
FblI	GTMKAC	2 cut(s)	371, 558
Fnu4HI	GCNGC	2 cut(s)	358, 450
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	2 cut(s)	57, 769
Fsp4HI	GCNGC	2 cut(s)	358, 450
FspBI	CTAG	2 cut(s)	639, 749
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	358, 450
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	7 cut(s)	62, 177, 203, 249, 284, 525, 730
HapII	CCGG	1 cut(s)	774
HgaI	GACGC	1 cut(s)	913
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	1 cut(s)	530
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	2 cut(s)	151, 559
HindII	GTYRAC	2 cut(s)	151, 559
HindIII	AAGCTT	2 cut(s)	125, 867
HinfI	GANTC	6 cut(s)	13, 26, 70, 323, 555, 709
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	3 cut(s)	151, 372, 559
Hpy188I	TCNGA	2 cut(s)	364, 460
Hpy188III	TCNNGA	3 cut(s)	17, 274, 320
Hpy8I	GTNNAC	3 cut(s)	151, 372, 559
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	4 cut(s)	178, 406, 465, 486
HpyCH4III	ACNGT	2 cut(s)	302, 548
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
Hsp92II	CATG	1 cut(s)	530
HspAI	GCGC	1 cut(s)	452
KpnI	GGTACC	1 cut(s)	911
LmnI	GCTCC	4 cut(s)	52, 276, 772, 788
Lsp1109I	GCAGC	2 cut(s)	344, 436
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	639, 749
MaeIII	GTNAC	2 cut(s)	296, 641
MboII	GAAGA	2 cut(s)	100, 698
MhlI	GDGCHC	3 cut(s)	57, 673, 769
MlsI	TGGCCA	2 cut(s)	525, 730
MluCI	AATT	3 cut(s)	429, 530, 828
MluNI	TGGCCA	2 cut(s)	525, 730
MlyI	GAGTC	3 cut(s)	20, 64, 564
MmeI	TCCRAC	1 cut(s)	674
Mox20I	TGGCCA	2 cut(s)	525, 730
MscI	TGGCCA	2 cut(s)	525, 730
MseI	TTAA	3 cut(s)	129, 171, 198
MslI	CAYNNNNRTG	1 cut(s)	405
Msp20I	TGGCCA	2 cut(s)	525, 730
MspA1I	CMGCKG	2 cut(s)	76, 157
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	4 cut(s)	32, 179, 563, 775
MvaI	CCWGG	3 cut(s)	32, 179, 563
MvnI	CGCG	2 cut(s)	883, 924
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	775
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	3 cut(s)	768, 784, 909
NmuCI	GTSAC	1 cut(s)	641
PaqCI	CACCTGC	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	13, 323, 709
PkrI	GCNGC	2 cut(s)	359, 451
PleI	GAGTC	3 cut(s)	20, 64, 563
PpsI	GAGTC	3 cut(s)	20, 64, 563
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	30, 177, 561
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	3 cut(s)	30, 177, 561
PspN4I	GGNNCC	3 cut(s)	768, 784, 909
PspPI	GGNCC	3 cut(s)	60, 175, 919
PvuII	CAGCTG	2 cut(s)	76, 157
RsaI	GTAC	3 cut(s)	335, 579, 909
RsaNI	GTAC	3 cut(s)	334, 578, 908
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	129, 171, 198
SatI	GCNGC	2 cut(s)	358, 450
Sau96I	GGNCC	3 cut(s)	60, 175, 919
ScaI	AGTACT	1 cut(s)	579
SchI	GAGTC	3 cut(s)	20, 64, 564
ScrFI	CCNGG	4 cut(s)	32, 179, 563, 775
SduI	GDGCHC	3 cut(s)	57, 673, 769
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	919
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	3 cut(s)	128, 191, 853
SmoI	CTYRAG	3 cut(s)	128, 191, 853
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	3 cut(s)	429, 530, 828
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	4 cut(s)	5, 570, 771, 922
SspMI	CTAG	2 cut(s)	639, 749
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	4 cut(s)	30, 177, 561, 773
StyI	CCWWGG	4 cut(s)	244, 285, 480, 738
TaaI	ACNGT	2 cut(s)	302, 548
TaqI	TCGA	1 cut(s)	558
TasI	AATT	3 cut(s)	429, 530, 828
TatI	WGTACW	2 cut(s)	333, 577
TfiI	GAWTC	3 cut(s)	13, 323, 709
Tru1I	TTAA	3 cut(s)	129, 171, 198
Tru9I	TTAA	3 cut(s)	129, 171, 198
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	2 cut(s)	357, 449
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	2 cut(s)	543, 711
TspRI	CASTG	1 cut(s)	553
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	919
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	2 cut(s)	530, 828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	2 cut(s)	371, 558
XspI	CTAG	2 cut(s)	639, 749
ZrmI	AGTACT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.