Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

27313953 .. 27315210

Gene Structure 1258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGGCTTGTTGATACTAAGACTTATACAGCAAATTTTGGGACGGGTGAACTTGAGGGGGAACTTGATTCTCTTGTGGAGGGGGCTAAAAGTTCTTTGATTTTGGCCAATTTGAAGAATCATCTCATAATTGACAAGATGGCGGAGAGGATTCGTGAGTTGGACTCCCAGGTGCTAGCAACTAACAAGGAGCTCAGGGCGACCCAGACTCAACTGGGTCAAAAGAAGAAAGATGTGGCTAAGATGGAGGATTATCACAAAAGGCTGAAGGAAAAAGAAACAGAGGTTGATCAGCTGGGTGAAAAAGTTAAGGGCCTGGAGAAGGAACTCAGGGTTAAGGCCAATGAGTGCAAGAAAAACAAAGATCTGGAGGTGGAAGTCCAAGACCTTAGAGATAGGGTTGAGGGTCTCAGGAGCAAGGCCAGGGCTAGTCGTAATAGTATTCTGAGGGAGTTCCAGGATTCTAAGGAGTACAAGGACATCCTAGAGAATAGCTACTCGGAGGGATATACTGACTTGCTTACCCTGTGGGTGGAGCATTTTGGTGAGAAGGGTATGGGATGGGCAGTTTCTTTGGGTGTTGATGCTGTGCCTTCAGAAATCAAGGGTAGCCCTTCTAAGGTTACACTTGCCGATGCAAGTCCAGGTCTTGCCCTGTCAAGTCATGAAGTTGAGGGATTGGACAGTGGAGGAGTCGACCAGGCAAGCGGGTCAGTATTGGGAGACGAACCTACCGAGGCACTAAGCGACGACCATCAGCAAGGTAAGTCCGGCACTGGTGACACTCCAGCTGAGGACAAAGGGGGTGCTCTTGGAGGTGGGGAAGATGGGGATGAAAGGGCTAAGGTGACAAATGCCGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.26

Weight (kDa)

4.86

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	696
AciI	CCGC	2 cut(s)	143, 708
AclWI	GGATC	1 cut(s)	854
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	287, 579
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	322, 532, 619
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	6 cut(s)	168, 315, 422, 456, 643, 699
AluBI	AGCT	4 cut(s)	193, 295, 495, 791
AluI	AGCT	4 cut(s)	193, 295, 495, 791
Alw21I	GWGCWC	2 cut(s)	195, 811
Alw26I	GTCTC	2 cut(s)	413, 717
AlwI	GGATC	1 cut(s)	854
AoxI	GGCC	4 cut(s)	105, 313, 339, 420
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	5 cut(s)	59, 311, 557, 791, 859
AsuNHI	GCTAGC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	195, 811
BbvCI	CCTCAGC	1 cut(s)	792
BccI	CCATC	5 cut(s)	133, 238, 555, 762, 821
BciT130I	CCWGG	6 cut(s)	170, 317, 424, 458, 645, 701
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	413, 717
BfaI	CTAG	3 cut(s)	176, 429, 485
BglII	AGATCT	1 cut(s)	364
Bme1390I	CCNGG	6 cut(s)	170, 317, 424, 458, 645, 701
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	6 cut(s)	170, 317, 424, 458, 645, 701
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	574, 625
BmtI	GCTAGC	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	3 cut(s)	338, 389, 771
Bpu10I	CCTNAGC	3 cut(s)	194, 792, 843
BpuEI	CTTGAG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	168, 423, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 532, 619
Bse1I	ACTGG	2 cut(s)	219, 781
BseBI	CCWGG	6 cut(s)	170, 317, 424, 458, 645, 701
BseDI	CCNNGG	3 cut(s)	168, 423, 735
BseGI	GGATG	3 cut(s)	480, 566, 838
BseLI	CCNNNNNNNGG	3 cut(s)	322, 532, 619
BseMII	CTCAG	5 cut(s)	208, 343, 424, 437, 783
BseNI	ACTGG	2 cut(s)	219, 781
BseRI	GAGGAG	1 cut(s)	705
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	4 cut(s)	107, 315, 341, 422
BsiHKAI	GWGCWC	2 cut(s)	195, 811
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	322, 532, 619
BsmAI	GTCTC	2 cut(s)	413, 717
BsmBI	CGTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	4 cut(s)	107, 315, 341, 422
Bso31I	GGTCTC	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	195, 811
Bsp143I	GATC	3 cut(s)	289, 364, 859
BspACI	CCGC	2 cut(s)	143, 708
BspANI	GGCC	4 cut(s)	107, 315, 341, 422
BspCNI	CTCAG	5 cut(s)	207, 342, 423, 438, 784
BspHI	TCATGA	1 cut(s)	664
BspOI	GCTAGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	219, 781
BssECI	CCNNGG	3 cut(s)	168, 423, 735
BssMI	GATC	3 cut(s)	289, 364, 859
Bst2UI	CCWGG	6 cut(s)	170, 317, 424, 458, 645, 701
Bst4CI	ACNGT	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	177, 706
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	3 cut(s)	480, 566, 838
BstKTI	GATC	3 cut(s)	292, 367, 862
BstMAI	GTCTC	2 cut(s)	413, 717
BstMBI	GATC	3 cut(s)	289, 364, 859
BstNI	CCWGG	6 cut(s)	170, 317, 424, 458, 645, 701
BstSCI	CCNGG	6 cut(s)	168, 315, 422, 456, 643, 699
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	4 cut(s)	107, 315, 341, 422
BtsCI	GGATG	3 cut(s)	480, 566, 838
BtsIMutI	CAGTG	2 cut(s)	691, 774
Cac8I	GCNNGC	2 cut(s)	177, 706
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	1 cut(s)	665
CviQI	GTAC	1 cut(s)	472
DpnI	GATC	3 cut(s)	291, 366, 861
DpnII	GATC	3 cut(s)	289, 364, 859
EaeI	YGGCCR	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	287, 579
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	6 cut(s)	168, 315, 422, 456, 643, 699
EcoT38I	GRGCYC	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	717
FaeI	CATG	1 cut(s)	668
FaiI	YATR	5 cut(s)	27, 128, 510, 557, 666
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	664
FauI	CCCGC	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	696
FokI	GGATG	3 cut(s)	467, 573, 845
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	3 cut(s)	176, 429, 485
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	3 cut(s)	338, 389, 771
HaeIII	GGCC	4 cut(s)	107, 315, 341, 422
HapII	CCGG	1 cut(s)	771
Hin1II	CATG	1 cut(s)	668
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	7 cut(s)	68, 118, 151, 164, 208, 461, 693
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	5 cut(s)	59, 311, 557, 791, 859
Hpy166II	GTNNAC	2 cut(s)	50, 697
Hpy188I	TCNGA	3 cut(s)	447, 502, 598
Hpy188III	TCNNGA	4 cut(s)	155, 368, 412, 665
Hpy8I	GTNNAC	2 cut(s)	50, 697
Hpy99I	CGWCG	1 cut(s)	752
HpyAV	CCTTC	5 cut(s)	262, 316, 544, 603, 624
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4V	TGCA	2 cut(s)	351, 638
Hsp92II	CATG	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	289, 364, 859
LmnI	GCTCC	3 cut(s)	190, 414, 535
LweI	GCATC	2 cut(s)	574, 625
MaeI	CTAG	3 cut(s)	176, 429, 485
MaeIII	GTNAC	3 cut(s)	622, 779, 847
MalI	GATC	3 cut(s)	291, 366, 861
MboI	GATC	3 cut(s)	289, 364, 859
MboII	GAAGA	3 cut(s)	127, 238, 836
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	195, 811
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	3 cut(s)	34, 109, 129
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	3 cut(s)	158, 202, 702
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	2 cut(s)	309, 336
MslI	CAYNNNNRTG	1 cut(s)	543
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	295, 791
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	6 cut(s)	170, 317, 424, 458, 645, 701
MvaI	CCWGG	6 cut(s)	170, 317, 424, 458, 645, 701
NdeII	GATC	3 cut(s)	289, 364, 859
NheI	GCTAGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	668
NmuCI	GTSAC	2 cut(s)	779, 847
PagI	TCATGA	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	68, 118, 151, 461
PfoI	TCCNGGA	1 cut(s)	456
PleI	GAGTC	3 cut(s)	158, 202, 701
PpsI	GAGTC	3 cut(s)	158, 202, 701
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	6 cut(s)	168, 315, 422, 456, 643, 699
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	6 cut(s)	168, 315, 422, 456, 643, 699
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	364
PvuII	CAGCTG	2 cut(s)	295, 791
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	695
SaqAI	TTAA	2 cut(s)	309, 336
Sau3AI	GATC	3 cut(s)	289, 364, 859
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	3 cut(s)	158, 202, 702
ScrFI	CCNGG	6 cut(s)	170, 317, 424, 458, 645, 701
SduI	GDGCHC	2 cut(s)	195, 811
SfaNI	GCATC	2 cut(s)	574, 625
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	34, 109, 129
SsiI	CCGC	2 cut(s)	143, 708
SspMI	CTAG	3 cut(s)	176, 429, 485
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	6 cut(s)	168, 315, 422, 456, 643, 699
TaaI	ACNGT	1 cut(s)	686
TaqI	TCGA	1 cut(s)	696
TasI	AATT	3 cut(s)	34, 109, 129
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	4 cut(s)	68, 118, 151, 461
Tru1I	TTAA	2 cut(s)	309, 336
Tru9I	TTAA	2 cut(s)	309, 336
TscAI	CASTG	2 cut(s)	691, 781
TseFI	GTSAC	2 cut(s)	779, 847
Tsp45I	GTSAC	2 cut(s)	779, 847
TspDTI	ATGAA	2 cut(s)	681, 849
TspRI	CASTG	2 cut(s)	691, 781
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	696
XspI	CTAG	3 cut(s)	176, 429, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.