Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

31980805 .. 31982479

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTAGAATTAGGTATTAGGATACCGTTCCAGCCCTCCGTGCATCAATTGGTAAGTGAGTTTGGCATTGCTCCAGCTCAAATTAATCCTAATGGCTATAGGGTGATTATTGCCTTGATAGCATTGTGGAACAATAAATTTCGTTGTGACCCACCAGTTGAAATTCTTCATTACTGTTTGCGGCTTAAGAAGAACATATTAGCAACCAAGGATCCTATTAAGGGTTTTTGTTGTATTGTCCCTCAGCGTCCTACCATTGTACTTGAGCTTTCAGTTGTGAAAGAGAGATCCAAAACTTTGCTTGATCCCTGGAGGGAAGAACAACATTTCAAGACGATTGTCACAGAAGCGAAATTGGAGAGGCTTAGGATAGCAACTCCAGCCAGAAATATGACACTTAACAAGAACGATCCTAGACTTTGTGCAAGGATTCTCCAGCAACGTCAAACCATAAAGGGGCCAATTGTGCCCAAAGCCTTGGTCCCTCCTAATGAAGGCATGTCTTCACCTAGGACCCCAAGTCCTAAGTTTCAGGCCCAACTACCTGGATTTAGGGAGGCAACAATCAGATCTCCCATGGATTCATTTGAAAATGCTTCAGGAAAAAGGAAAATGAGTGAGGAGGTGCAGGGTAAGCAAGACCCTCTGAAGAAGAAAATGAGGGTGGATGTTCAGGTCGAAAATCCCATGGAAGATGCTAGGAGGGAGACTCGGCAGTCCAAGACTAGGCAGCGAGTTGACACTCTGGGTGTGCGCTACCGTCAAGTTGACGTTCCAGAATTTCTTTATGATTACGTTAGGGACATGATGGGGCTTGTTGATACTAAGGCTTATACCGCCAATTTGAAGAACCATCTTATAATTGACAAGATGGCAGAGAGGATTTGTGAACTAGATTCACAGGTGCTTGCTGCCAACAAGGAGCTCAAGGCGACCAAGGCTCAGCTGGGTCAGAAGAAGAAAGATATGGCTAAACTGGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_28

Protein Analysis

329

Amino Acids

37.59

Weight (kDa)

9.69

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	860
AasI	GACNNNNNNGTC	1 cut(s)	715
AciI	CCGC	2 cut(s)	181, 837
AclWI	GGATC	5 cut(s)	206, 219, 282, 299, 404
AcsI	RAATTY	3 cut(s)	137, 162, 779
AcuI	CTGAAG	2 cut(s)	582, 668
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	4 cut(s)	221, 456, 494, 726
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	161, 331, 590, 847
AhdI	GACNNNNNGTC	1 cut(s)	519
AjnI	CCWGG	2 cut(s)	308, 544
AluBI	AGCT	4 cut(s)	77, 268, 925, 946
AluI	AGCT	4 cut(s)	77, 268, 925, 946
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	5 cut(s)	206, 219, 282, 299, 404
AoxI	GGCC	2 cut(s)	458, 534
ApeKI	GCWGC	2 cut(s)	730, 911
ApoI	RAATTY	3 cut(s)	137, 162, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AseI	ATTAAT	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	165
AspA2I	CCTAGG	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	4 cut(s)	458, 481, 513, 535
AsuHPI	GGTGA	2 cut(s)	115, 498
AvaII	GGWCC	2 cut(s)	481, 513
AvrII	CCTAGG	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	927
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	927
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	742, 898
BccI	CCATC	3 cut(s)	802, 861, 865
BciT130I	CCWGG	2 cut(s)	310, 546
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	5 cut(s)	414, 510, 699, 726, 893
BfmI	CTRYAG	1 cut(s)	97
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	3 cut(s)	182, 731, 912
BlnI	CCTAGG	1 cut(s)	509
BlpI	GCTNAGC	1 cut(s)	942
BlsI	GCNGC	3 cut(s)	183, 732, 913
Bme1390I	CCNGG	2 cut(s)	310, 546
Bme18I	GGWCC	2 cut(s)	481, 513
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmgT120I	GGNCC	4 cut(s)	458, 481, 513, 535
BmiI	GGNNCC	4 cut(s)	213, 459, 483, 515
BmrFI	CCNGG	2 cut(s)	310, 546
BmsI	GCATC	2 cut(s)	52, 685
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
BpmI	CTGGAG	4 cut(s)	57, 331, 363, 419
Bpu10I	CCTNAGC	2 cut(s)	243, 365
Bpu1102I	GCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	2 cut(s)	284, 911
BsaJI	CCNNGG	7 cut(s)	207, 308, 477, 509, 576, 687, 936
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 456, 494, 726
Bse1I	ACTGG	2 cut(s)	155, 981
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	310, 546
BseDI	CCNNGG	7 cut(s)	207, 308, 477, 509, 576, 687, 936
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	4 cut(s)	221, 456, 494, 726
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	257, 956
BseNI	ACTGG	2 cut(s)	155, 981
BseRI	GAGGAG	1 cut(s)	635
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	742, 898
BseYI	CCCAGC	1 cut(s)	946
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	2 cut(s)	460, 536
BsiHKAI	GWGCWC	1 cut(s)	927
BslFI	GGGAC	3 cut(s)	224, 467, 815
BslI	CCNNNNNNNGG	4 cut(s)	221, 456, 494, 726
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	3 cut(s)	224, 467, 815
BsnI	GGCC	2 cut(s)	460, 536
Bsp1286I	GDGCHC	2 cut(s)	471, 927
Bsp143I	GATC	5 cut(s)	211, 287, 304, 409, 569
Bsp1720I	GCTNAGC	1 cut(s)	942
Bsp19I	CCATGG	2 cut(s)	576, 687
BspACI	CCGC	2 cut(s)	181, 837
BspANI	GGCC	2 cut(s)	460, 536
BspCNI	CTCAG	2 cut(s)	256, 955
BspLI	GGNNCC	4 cut(s)	213, 459, 483, 515
BspPI	GGATC	5 cut(s)	206, 219, 282, 299, 404
BspTI	CTTAAG	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	155, 981
BssECI	CCNNGG	7 cut(s)	207, 308, 477, 509, 576, 687, 936
BssMI	GATC	5 cut(s)	211, 287, 304, 409, 569
BssT1I	CCWWGG	6 cut(s)	207, 477, 509, 576, 687, 936
Bst2UI	CCWGG	2 cut(s)	310, 546
Bst4CI	ACNGT	3 cut(s)	27, 176, 761
BstAFI	CTTAAG	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	909
BstDEI	CTNAG	5 cut(s)	243, 365, 525, 825, 942
BstDSI	CCRYGG	2 cut(s)	576, 687
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	5 cut(s)	214, 290, 307, 412, 572
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	5 cut(s)	211, 287, 304, 409, 569
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 119, 380, 466, 634, 836, 938
BstNI	CCWGG	2 cut(s)	310, 546
BstNSI	RCATGY	1 cut(s)	502
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	308, 544
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	742, 898
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	3 cut(s)	211, 287, 569
BstXI	CCANNNNNNTGG	2 cut(s)	478, 545
BstYI	RGATCY	3 cut(s)	211, 287, 569
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	460, 536
BtgI	CCRYGG	2 cut(s)	576, 687
BtsCI	GGATG	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	909
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	4 cut(s)	458, 481, 513, 535
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	4 cut(s)	499, 577, 688, 805
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	5 cut(s)	243, 365, 525, 825, 942
DpnI	GATC	5 cut(s)	213, 289, 306, 411, 571
DpnII	GATC	5 cut(s)	211, 287, 304, 409, 569
DrdI	GACNNNNNNGTC	1 cut(s)	715
DriI	GACNNNNNGTC	1 cut(s)	519
DseDI	GACNNNNNNGTC	1 cut(s)	715
Eam1105I	GACNNNNNGTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	925
Eco130I	CCWWGG	6 cut(s)	207, 477, 509, 576, 687, 936
Eco24I	GRGCYC	1 cut(s)	927
Eco47I	GGWCC	2 cut(s)	481, 513
Eco53kI	GAGCTC	1 cut(s)	925
Eco57I	CTGAAG	2 cut(s)	582, 668
EcoICRI	GAGCTC	1 cut(s)	925
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	308, 544
EcoT14I	CCWWGG	6 cut(s)	207, 477, 509, 576, 687, 936
EcoT38I	GRGCYC	1 cut(s)	927
ErhI	CCWWGG	6 cut(s)	207, 477, 509, 576, 687, 936
FaeI	CATG	4 cut(s)	502, 580, 691, 808
FaqI	GGGAC	3 cut(s)	224, 467, 815
FatI	CATG	4 cut(s)	498, 576, 687, 804
Fnu4HI	GCNGC	3 cut(s)	182, 731, 912
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	3 cut(s)	182, 731, 912
FspBI	CTAG	5 cut(s)	414, 510, 699, 726, 893
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	3 cut(s)	182, 731, 912
GsaI	CCCAGC	1 cut(s)	950
GsuI	CTGGAG	4 cut(s)	57, 331, 363, 419
HaeIII	GGCC	2 cut(s)	460, 536
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	4 cut(s)	502, 580, 691, 808
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HincII	GTYRAC	2 cut(s)	739, 769
HindII	GTYRAC	2 cut(s)	739, 769
HinfI	GANTC	4 cut(s)	430, 581, 709, 896
HphI	GGTGA	2 cut(s)	115, 498
Hpy166II	GTNNAC	3 cut(s)	739, 769, 890
Hpy188I	TCNGA	3 cut(s)	569, 648, 954
Hpy188III	TCNNGA	3 cut(s)	331, 600, 776
Hpy8I	GTNNAC	3 cut(s)	739, 769, 890
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	3 cut(s)	27, 176, 761
HpyCH4IV	ACGT	3 cut(s)	442, 771, 795
HpyCH4V	TGCA	3 cut(s)	43, 425, 628
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 119, 380, 466, 634, 836, 938
HpyF3I	CTNAG	5 cut(s)	243, 365, 525, 825, 942
HpySE526I	ACGT	3 cut(s)	442, 771, 795
Hsp92II	CATG	4 cut(s)	502, 580, 691, 808
HspAI	GCGC	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	211, 287, 304, 409, 569
LmnI	GCTCC	2 cut(s)	76, 922
Lsp1109I	GCAGC	2 cut(s)	742, 898
LweI	GCATC	2 cut(s)	52, 685
MaeI	CTAG	5 cut(s)	414, 510, 699, 726, 893
MaeII	ACGT	3 cut(s)	442, 771, 795
MaeIII	GTNAC	2 cut(s)	146, 340
MalI	GATC	5 cut(s)	213, 289, 306, 411, 571
MboI	GATC	5 cut(s)	211, 287, 304, 409, 569
MfeI	CAATTG	2 cut(s)	47, 462
MflI	RGATCY	3 cut(s)	211, 287, 569
MhlI	GDGCHC	2 cut(s)	471, 927
MlyI	GAGTC	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	5 cut(s)	84, 186, 219, 399, 985
MspA1I	CMGCKG	1 cut(s)	946
MspCI	CTTAAG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	310, 546
MunI	CAATTG	2 cut(s)	47, 462
MvaI	CCWGG	2 cut(s)	310, 546
MwoI	GCNNNNNNNGC	7 cut(s)	40, 119, 380, 466, 634, 836, 938
NcoI	CCATGG	2 cut(s)	576, 687
NdeII	GATC	5 cut(s)	211, 287, 304, 409, 569
NlaIII	CATG	4 cut(s)	502, 580, 691, 808
NlaIV	GGNNCC	4 cut(s)	213, 459, 483, 515
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	2 cut(s)	146, 340
NspI	RCATGY	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	430, 581, 896
PkrI	GCNGC	3 cut(s)	183, 732, 913
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	513
PshAI	GACNNNNGTC	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	860
Psp124BI	GAGCTC	1 cut(s)	927
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	308, 544
PspFI	CCCAGC	1 cut(s)	946
PspGI	CCWGG	2 cut(s)	308, 544
PspN4I	GGNNCC	4 cut(s)	213, 459, 483, 515
PspPI	GGNCC	4 cut(s)	458, 481, 513, 535
PspPPI	RGGWCCY	1 cut(s)	513
PsuI	RGATCY	3 cut(s)	211, 287, 569
PvuII	CAGCTG	1 cut(s)	946
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	927
SaqAI	TTAA	5 cut(s)	84, 186, 219, 399, 985
SatI	GCNGC	3 cut(s)	182, 731, 912
Sau3AI	GATC	5 cut(s)	211, 287, 304, 409, 569
Sau96I	GGNCC	4 cut(s)	458, 481, 513, 535
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	310, 546
SduI	GDGCHC	2 cut(s)	471, 927
SfaNI	GCATC	2 cut(s)	52, 685
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	2 cut(s)	481, 513
SmlI	CTYRAG	3 cut(s)	185, 263, 926
SmoI	CTYRAG	3 cut(s)	185, 263, 926
SsiI	CCGC	2 cut(s)	181, 837
SspMI	CTAG	5 cut(s)	414, 510, 699, 726, 893
SstI	GAGCTC	1 cut(s)	927
StyD4I	CCNGG	2 cut(s)	308, 544
StyI	CCWWGG	6 cut(s)	207, 477, 509, 576, 687, 936
TaaI	ACNGT	3 cut(s)	27, 176, 761
TaiI	ACGT	3 cut(s)	445, 774, 798
TaqI	TCGA	1 cut(s)	678
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	430, 581, 896
Tru1I	TTAA	5 cut(s)	84, 186, 219, 399, 985
Tru9I	TTAA	5 cut(s)	84, 186, 219, 399, 985
TseFI	GTSAC	2 cut(s)	146, 340
TseI	GCWGC	2 cut(s)	730, 911
Tsp45I	GTSAC	2 cut(s)	146, 340
TspDTI	ATGAA	3 cut(s)	158, 507, 573
TspGWI	ACGGA	1 cut(s)	28
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	481, 513
VspI	ATTAAT	1 cut(s)	84
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	3 cut(s)	137, 162, 779
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmaJI	CCTAGG	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	5 cut(s)	414, 510, 699, 726, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.