Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

41104364 .. 41105183

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACACTTTATAAGAACGATGCTAGACTTCGTGCAAGGATTCTCCAACAAAGTCAAGCCATAAAGGGGCCAATTGTGCCTAAACCCTTGGTCCCCACTAATGAAGGCATGTCTTCGAGCCCGACCACCCATGCCACCATCACCCCTTGGACTTCGGAGGGCAACATCAGATCCTCATTGACCCATTTGAAAAAGTGGAAAATTTCACGGAAGACACTAGGAGGGAAACTCGGCACTCTAAGACCAGGCAGCGAGTTGACATTCCAGGGGTGTCAAGTTGACATTCCAGAATTTCCCTCCTCTAATTATGTTGGAGACATGATGAGGCTTGTTGACACTAAAGCTTACATTGCAAATTTTGATGACGACAAACTCGAGGGAGAACTTGACTCCCTTGTGGAAGGTGCTCCAGCCAACAAGGAGCTTAAGGCGACCAAGACTCAGCTGAGTCAGAAGAAGAAAGATATGGCAAAACTGGAGGATTGTCACAAAAGACTGAAGGAGAAAGAAATAGAGGTTGATCAGCTGGGAGAAAAGGGCATGGAGAAGGAACTTAGGGTTAAGGCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.24

Weight (kDa)

9.32

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	201, 290, 355
AcuI	CTGAAG	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	244, 264
AluBI	AGCT	4 cut(s)	344, 424, 445, 526
AluI	AGCT	4 cut(s)	344, 424, 445, 526
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	68, 564
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	3 cut(s)	201, 290, 355
AspS9I	GGNCC	2 cut(s)	68, 91
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	105, 218
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	246, 266
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	24, 218
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	246, 266
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	68, 91
BmiI	GGNNCC	2 cut(s)	69, 93
BmrFI	CCNGG	2 cut(s)	246, 266
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	2 cut(s)	105, 218
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	2 cut(s)	393, 497
BsaJI	CCNNGG	3 cut(s)	87, 146, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	246, 266
BseDI	CCNNGG	3 cut(s)	87, 146, 265
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	2 cut(s)	437, 455
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	526
BshFI	GGCC	2 cut(s)	70, 566
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	70, 566
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	122, 409
Bsp143I	GATC	2 cut(s)	170, 520
BspANI	GGCC	2 cut(s)	70, 566
BspCNI	CTCAG	2 cut(s)	438, 454
BspLI	GGNNCC	2 cut(s)	69, 93
BspPI	GGATC	1 cut(s)	165
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	3 cut(s)	87, 146, 265
BssMI	GATC	2 cut(s)	170, 520
BssT1I	CCWWGG	2 cut(s)	87, 146
Bst2UI	CCWGG	2 cut(s)	246, 266
BstAFI	CTTAAG	1 cut(s)	425
BstDEI	CTNAG	4 cut(s)	239, 441, 446, 554
BstKTI	GATC	2 cut(s)	173, 523
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	2 cut(s)	170, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 350
BstNI	CCWGG	2 cut(s)	246, 266
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	244, 264
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	2 cut(s)	105, 218
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	70, 566
Cfr13I	GGNCC	2 cut(s)	68, 91
CviAII	CATG	4 cut(s)	109, 131, 319, 541
DdeI	CTNAG	4 cut(s)	239, 441, 446, 554
DpnI	GATC	2 cut(s)	172, 522
DpnII	GATC	2 cut(s)	170, 520
Eco130I	CCWWGG	2 cut(s)	87, 146
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	244, 264
EcoT14I	CCWWGG	2 cut(s)	87, 146
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	2 cut(s)	87, 146
FaeI	CATG	4 cut(s)	112, 134, 322, 544
FaiI	YATR	8 cut(s)	12, 62, 110, 132, 309, 320, 467, 542
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	4 cut(s)	108, 130, 318, 540
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	2 cut(s)	24, 218
GluI	GCNGC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	530
GsuI	CTGGAG	2 cut(s)	393, 497
HaeIII	GGCC	2 cut(s)	70, 566
Hin1II	CATG	4 cut(s)	112, 134, 322, 544
HincII	GTYRAC	3 cut(s)	258, 280, 334
HindII	GTYRAC	3 cut(s)	258, 280, 334
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	4 cut(s)	40, 389, 439, 448
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	258, 280, 334
Hpy188I	TCNGA	3 cut(s)	157, 170, 453
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	3 cut(s)	258, 280, 334
HpyAV	CCTTC	4 cut(s)	98, 395, 493, 541
HpyCH4V	TGCA	2 cut(s)	35, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 350
HpyF3I	CTNAG	4 cut(s)	239, 441, 446, 554
Hsp92II	CATG	4 cut(s)	112, 134, 322, 544
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	170, 520
LmnI	GCTCC	2 cut(s)	412, 421
LpnPI	CCDG	8 cut(s)	231, 251, 258, 278, 300, 423, 461, 512
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	24, 218
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	2 cut(s)	172, 522
MboI	GATC	2 cut(s)	170, 520
MboII	GAAGA	4 cut(s)	105, 223, 466, 469
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	122, 409
MluCI	AATT	5 cut(s)	72, 201, 290, 304, 355
MlyI	GAGTC	3 cut(s)	383, 433, 457
MmeI	TCCRAC	2 cut(s)	70, 292
MnlI	CCTC	9 cut(s)	151, 184, 215, 307, 310, 318, 370, 472, 508
MseI	TTAA	2 cut(s)	426, 561
MspA1I	CMGCKG	2 cut(s)	445, 526
MspCI	CTTAAG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	246, 266
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	246, 266
MwoI	GCNNNNNNNGC	2 cut(s)	76, 350
NdeII	GATC	2 cut(s)	170, 520
NlaIII	CATG	4 cut(s)	112, 134, 322, 544
NlaIV	GGNNCC	2 cut(s)	69, 93
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	3 cut(s)	383, 433, 456
PpsI	GAGTC	3 cut(s)	383, 433, 456
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	244, 264
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	2 cut(s)	244, 264
PspN4I	GGNNCC	2 cut(s)	69, 93
PspPI	GGNCC	2 cut(s)	68, 91
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	170
PvuII	CAGCTG	2 cut(s)	445, 526
SaqAI	TTAA	2 cut(s)	426, 561
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	170, 520
Sau96I	GGNCC	2 cut(s)	68, 91
SchI	GAGTC	3 cut(s)	383, 433, 457
ScrFI	CCNGG	2 cut(s)	246, 266
SduI	GDGCHC	2 cut(s)	122, 409
SetI	ASST	6 cut(s)	346, 406, 426, 447, 519, 528
SfaNI	GCATC	1 cut(s)	10
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	374, 425
SmoI	CTYRAG	2 cut(s)	374, 425
Sse9I	AATT	5 cut(s)	72, 201, 290, 304, 355
SspMI	CTAG	2 cut(s)	24, 218
StyD4I	CCNGG	2 cut(s)	244, 264
StyI	CCWWGG	2 cut(s)	87, 146
TaqI	TCGA	2 cut(s)	116, 375
TasI	AATT	5 cut(s)	72, 201, 290, 304, 355
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	426, 561
Tru9I	TTAA	2 cut(s)	426, 561
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	3 cut(s)	201, 290, 355
XceI	RCATGY	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	2 cut(s)	24, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.