Rroxscaffold_2G00155220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004212
Physical Location & Seq
Forward (+)
91601891 .. 91602915
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155220.1

Sequence Viewer

Length: 465 bp
ATGGAAATCCTAAACCTAAATCCCCAGCCCCTTCTCTGTTCGACAGTGAGACCAGGATCCGACCACCACCAACAGGAAGAGCACCCTTTGGCGCTAGCTGGTGACAACAAAAGAGAAGAAGCAAATAAGGAAACCCAAACAATCGGTGCAAGCAGCAGCCCACCAGCAACTGGGGCAAAGAAATCAGAGGAGAACGTGCCACCATCATCTTTACAGACTACTGCAAACGGGCCTTGTCCAAACTGTGGCAATATGTATACAAAGCCTTCTTGTCCTAGACTAAGGTGTCGATTTTCGTCGGAGCCTTTTCCAGTGCTGCCCAAGCGCTCTGAATCGGACATCAATTGTGAACCGGAATCTCACTCAAAATCAGAGTCAGACCGAGTTTCGTTGTGTGATTTCTTCACTAGAAAAGACTTGGATAGATTGATTGCTCTCAGTAGGCTTAAATATATAGTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.98

Weight (kDa)

6.42

Isoelectric Point (pI)

70.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 285
AccB7I CCANNNNNTGG 2 cut(s) 170, 245
AccI GTMKAC 1 cut(s) 257
AclWI GGATC 2 cut(s) 51, 64
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 73, 170, 245
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 2 cut(s) 51, 64
AlwNI CAGNNNCTG 1 cut(s) 170
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 3 cut(s) 153, 156, 316
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspLEI GCGC 2 cut(s) 94, 327
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 165, 168, 303
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 3 cut(s) 95, 276, 408
BfoI RGCGCY 2 cut(s) 95, 328
BisI GCNGC 3 cut(s) 154, 157, 317
BlsI GCNGC 3 cut(s) 155, 158, 318
Bme1390I CCNGG 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 58, 303
BmrFI CCNGG 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 180
BmtI GCTAGC 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 170, 245
Bse1I ACTGG 2 cut(s) 175, 311
BseBI CCWGG 1 cut(s) 54
BseLI CCNNNNNNNGG 3 cut(s) 73, 170, 245
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 2 cut(s) 175, 311
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 165, 168, 303
BseYI CCCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 3 cut(s) 73, 170, 245
BsmAI GTCTC 1 cut(s) 43
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 56
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 58, 303
BspOI GCTAGC 1 cut(s) 98
BspPI GGATC 2 cut(s) 51, 64
BspQI GCTCTTC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 175, 311
BssMI GATC 1 cut(s) 56
BssNAI GTATAC 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 46, 245
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 96, 151
BstDEI CTNAG 2 cut(s) 281, 437
BstH2I RGCGCY 2 cut(s) 95, 328
BstHHI GCGC 2 cut(s) 94, 327
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 173, 322
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 165, 168, 303
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BstZ17I GTATAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 51, 318
Cac8I GCNNGC 2 cut(s) 96, 151
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 2 cut(s) 94, 327
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 1 cut(s) 462
CviJI RGCY 7 cut(s) 28, 98, 159, 232, 265, 304, 445
CviKI_1 RGCY 7 cut(s) 28, 98, 159, 232, 265, 304, 445
DdeI CTNAG 2 cut(s) 281, 437
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 43
Eco47III AGCGCT 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 465
FaiI YATR 5 cut(s) 254, 258, 453, 455, 463
FatI CATG 1 cut(s) 461
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 154, 157, 317
Fsp4HI GCNGC 3 cut(s) 154, 157, 317
FspBI CTAG 3 cut(s) 95, 276, 408
GlaI GCGC 2 cut(s) 93, 326
GluI GCNGC 3 cut(s) 154, 157, 317
GsaI CCCAGC 1 cut(s) 28
HaeII RGCGCY 2 cut(s) 95, 328
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 353
HhaI GCGC 2 cut(s) 94, 327
Hin1II CATG 1 cut(s) 465
Hin6I GCGC 2 cut(s) 92, 325
HinP1I GCGC 2 cut(s) 92, 325
HinfI GANTC 3 cut(s) 332, 356, 374
HpaII CCGG 1 cut(s) 353
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 258, 350
Hpy188I TCNGA 7 cut(s) 61, 187, 301, 331, 337, 373, 379
Hpy8I GTNNAC 2 cut(s) 258, 350
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 41, 276
HpyCH4III ACNGT 2 cut(s) 46, 245
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 149, 224, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 322
HpyF3I CTNAG 2 cut(s) 281, 437
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 465
HspAI GCGC 2 cut(s) 92, 325
Kzo9I GATC 1 cut(s) 56
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 9 cut(s) 38, 39, 59, 66, 84, 156, 177, 324, 366
Lsp1109I GCAGC 3 cut(s) 165, 168, 303
MaeI CTAG 3 cut(s) 95, 276, 408
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 3 cut(s) 89, 128, 394
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 343
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 84, 279
MnlI CCTC 1 cut(s) 181
MseI TTAA 1 cut(s) 447
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 173, 322
NdeII GATC 1 cut(s) 56
NheI GCTAGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 2 cut(s) 58, 303
NmuCI GTSAC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 332, 356
PflMI CCANNNNNTGG 2 cut(s) 170, 245
PkrI GCNGC 3 cut(s) 155, 158, 318
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 58, 303
PspPI GGNCC 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 3 cut(s) 154, 157, 317
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 18, 100, 198, 287
Sse9I AATT 1 cut(s) 343
SspMI CTAG 3 cut(s) 95, 276, 408
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 46, 245
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 41, 289
TaqII GACCGA 1 cut(s) 396
TasI AATT 1 cut(s) 343
TfiI GAWTC 2 cut(s) 332, 356
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 2 cut(s) 51, 318
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 3 cut(s) 153, 156, 316
Tsp45I GTSAC 1 cut(s) 101
TspRI CASTG 2 cut(s) 51, 318
Van91I CCANNNNNTGG 2 cut(s) 170, 245
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 3 cut(s) 95, 276, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.