Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

91593610 .. 91600799

Gene Structure 7190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTTCAATGGAGTGCAGGATTTTCAACTCTATAGGGTTAATCTAGACGAAGAAAACAATGTTTCTAGGGAAATGATAAATGTTGAAGCAATAGGATCTGGTGCTAAATATGCTAGGTTTGTTTTGCGCGACGGGCCAACGGGAGAAATTGAACAGAAACATTTTTCTGCATGCCATCTGGTGGCAAAGAAGCGTGACCTGTACTTCCATCGATTTGTGCTCGACCTAGAAGAAGATGTTCCATATGCTTATGACCTAATAATGAAAAAGCAAGCTCCTCCGCGTGATTCTGGCGTTCTAGCAGGAAAATTTATAGCTTGTCAATTGGGGTTAGAAAGAGAGACCGAAACGGGAGGTACTGAGCATGTCACAGTTTATTTGGAGAAAAGTTCAAAGGATTTGTTGCAGCTCATATGCAAGCTGGAGGACCCAGACAACTTGGTGACAACAAAAGAGAGGAAGCAAATAAGGAGACCCAAACAATCTGTGCAGGGGAAAGAAGAGGCAAATGTGCCACCATCATCTCTACAGACTACTGCAAACAGGCCTTGTCCAAACTGTGGCCGCAATATGTATACAAACCCTTATTGTCCTGGATTAAGTTGTCGATTTTCGTCGGACCCTACCCCAGAGCTGCCCATGCGGCCTGCATCGGACATCGATTGGGAACTGGAATCTCACTCAAAATCAGAGTCAGACCGAGTTTCATCATTGTGTGATTTCTTCACTAGAAAAGATTTAGATAGATTGATACGCTCTCAATTGATTGGGGATGATGAGCTGCCTAGTAGTCCTCCGGATGGGTTTGTTACTCTATACCCGGCCATGCTAGAATTAGGTATTAGGATACCGTTCCAGCCCTCCGCGCATGGTTGGGTGAGTGAGCTTGGCGTTGCTCCAGCTCAAATTAATCCTAATGGCTACGAGCTTCCATCACTTCCTGGATTTAGGAGGGCAATGGTGAGATCTCCCATCGATTCGTTTGAAAAAATCTCGGGAAAAAGAAGAATGAGTGAGGAGGTGCAGGGTAAGCAAGACCCTCCGAAGAAGAAAACGAGGGTGGATGACGAGGCCGACAATCTCAATGAAGATGCGAAGAAGGAGACTCGGCAGTCAAGGCTAGGCGGCGAGTTGACACTCCGGTGTGCACCACCGTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

387

Amino Acids

43.55

Weight (kDa)

5.72

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1111
AccB7I	CCANNNNNTGG	2 cut(s)	181, 560
AccI	GTMKAC	1 cut(s)	575
AccII	CGCG	3 cut(s)	129, 283, 866
AccIII	TCCGGA	1 cut(s)	796
AciI	CCGC	5 cut(s)	281, 565, 643, 864, 1125
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	2 cut(s)	562, 822
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	2 cut(s)	203, 358
AfiI	CCNNNNNNNGG	3 cut(s)	181, 560, 800
AgsI	TTSAA	6 cut(s)	7, 26, 86, 152, 393, 986
AjnI	CCWGG	2 cut(s)	592, 940
AleI	CACNNNNGTG	1 cut(s)	1141
AluBI	AGCT	9 cut(s)	275, 317, 409, 421, 634, 781, 886, 902, 928
AluI	AGCT	9 cut(s)	275, 317, 409, 421, 634, 781, 886, 902, 928
Alw21I	GWGCWC	2 cut(s)	222, 1150
Alw26I	GTCTC	3 cut(s)	335, 466, 1097
Alw44I	GTGCAC	1 cut(s)	1146
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	994
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	6 cut(s)	134, 545, 562, 644, 822, 1071
ApaLI	GTGCAC	1 cut(s)	1146
ApeKI	GCWGC	3 cut(s)	406, 634, 781
ApoI	RAATTY	1 cut(s)	308
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AseI	ATTAAT	1 cut(s)	909
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	129, 868
AspS9I	GGNCC	3 cut(s)	134, 427, 619
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	3 cut(s)	454, 889, 973
AvaI	CYCGRG	1 cut(s)	994
AvaII	GGWCC	2 cut(s)	427, 619
BaeGI	GKGCMC	1 cut(s)	1150
Bbv12I	GWGCWC	2 cut(s)	222, 1150
BbvI	GCAGC	3 cut(s)	418, 621, 768
BccI	CCATC	6 cut(s)	183, 216, 526, 794, 940, 980
BciT130I	CCWGG	2 cut(s)	594, 942
BciVI	GTATCC	1 cut(s)	840
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	3 cut(s)	335, 466, 1097
BfaI	CTAG	9 cut(s)	44, 66, 114, 227, 299, 729, 786, 830, 1121
BfmI	CTRYAG	2 cut(s)	31, 527
BfuI	GTATCC	1 cut(s)	840
BglI	GCCNNNNNGGC	1 cut(s)	643
BglII	AGATCT	1 cut(s)	965
BisI	GCNGC	6 cut(s)	407, 565, 635, 644, 782, 1126
BlsI	GCNGC	6 cut(s)	408, 566, 636, 645, 783, 1127
Bme1390I	CCNGG	3 cut(s)	594, 821, 942
Bme18I	GGWCC	2 cut(s)	427, 619
BmeT110I	CYCGRG	1 cut(s)	994
BmgT120I	GGNCC	3 cut(s)	134, 427, 619
BmiI	GGNNCC	2 cut(s)	429, 621
BmrFI	CCNGG	3 cut(s)	594, 821, 942
BmsI	GCATC	2 cut(s)	659, 1081
BpmI	CTGGAG	2 cut(s)	443, 882
BpuMI	CCSGG	1 cut(s)	821
Bsa29I	ATCGAT	3 cut(s)	211, 660, 975
BsaI	GGTCTC	2 cut(s)	335, 466
BsaWI	WCCGGW	2 cut(s)	796, 1140
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 560, 800
Bse1I	ACTGG	1 cut(s)	675
Bse3DI	GCAATG	1 cut(s)	963
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	2 cut(s)	594, 942
BseCI	ATCGAT	3 cut(s)	211, 660, 975
BseGI	GGATG	3 cut(s)	778, 805, 1069
BseLI	CCNNNNNNNGG	3 cut(s)	181, 560, 800
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	675
BseRI	GAGGAG	2 cut(s)	267, 1031
BseSI	GKGCMC	1 cut(s)	1150
BseXI	GCAGC	3 cut(s)	418, 621, 768
BsgI	GTGCAG	3 cut(s)	35, 509, 1043
Bsh1236I	CGCG	3 cut(s)	129, 283, 866
BshFI	GGCC	6 cut(s)	136, 547, 564, 646, 824, 1073
BshVI	ATCGAT	3 cut(s)	211, 660, 975
BsiHKAI	GWGCWC	2 cut(s)	222, 1150
BsiHKCI	CYCGRG	1 cut(s)	994
BsiSI	CCGG	3 cut(s)	797, 821, 1141
BslI	CCNNNNNNNGG	3 cut(s)	181, 560, 800
BsmAI	GTCTC	3 cut(s)	335, 466, 1097
BsnI	GGCC	6 cut(s)	136, 547, 564, 646, 824, 1073
Bso31I	GGTCTC	2 cut(s)	335, 466
BsoBI	CYCGRG	1 cut(s)	994
Bsp1286I	GDGCHC	2 cut(s)	222, 1150
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	2 cut(s)	95, 965
BspACI	CCGC	5 cut(s)	281, 565, 643, 864, 1125
BspANI	GGCC	6 cut(s)	136, 547, 564, 646, 824, 1073
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	3 cut(s)	211, 660, 975
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	3 cut(s)	129, 283, 866
BspLI	GGNNCC	2 cut(s)	429, 621
BspPI	GGATC	1 cut(s)	103
BspTNI	GGTCTC	2 cut(s)	335, 466
BsrDI	GCAATG	1 cut(s)	963
BsrI	ACTGG	1 cut(s)	675
BssMI	GATC	2 cut(s)	95, 965
BssNAI	GTATAC	1 cut(s)	576
Bst1107I	GTATAC	1 cut(s)	576
Bst2UI	CCWGG	2 cut(s)	594, 942
Bst4CI	ACNGT	4 cut(s)	373, 560, 852, 1155
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	4 cut(s)	172, 273, 419, 648
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	778, 805, 1069
BstFNI	CGCG	3 cut(s)	129, 283, 866
BstHHI	GCGC	2 cut(s)	129, 868
BstKTI	GATC	2 cut(s)	98, 968
BstMAI	GTCTC	3 cut(s)	335, 466, 1097
BstMBI	GATC	2 cut(s)	95, 965
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 133, 640, 643, 865, 1030, 1117
BstNI	CCWGG	2 cut(s)	594, 942
BstNSI	RCATGY	2 cut(s)	174, 368
BstSCI	CCNGG	3 cut(s)	592, 819, 940
BstSFI	CTRYAG	2 cut(s)	31, 527
BstSLI	GKGCMC	1 cut(s)	1150
BstUI	CGCG	3 cut(s)	129, 283, 866
BstV1I	GCAGC	3 cut(s)	418, 621, 768
BstX2I	RGATCY	2 cut(s)	95, 965
BstYI	RGATCY	2 cut(s)	95, 965
BstZ17I	GTATAC	1 cut(s)	576
Bsu15I	ATCGAT	3 cut(s)	211, 660, 975
BsuI	GTATCC	1 cut(s)	840
BsuRI	GGCC	6 cut(s)	136, 547, 564, 646, 824, 1073
BsuTUI	ATCGAT	3 cut(s)	211, 660, 975
BtsCI	GGATG	3 cut(s)	778, 805, 1069
Cac8I	GCNNGC	4 cut(s)	172, 273, 419, 648
CfoI	GCGC	2 cut(s)	129, 868
Cfr13I	GGNCC	3 cut(s)	134, 427, 619
ClaI	ATCGAT	3 cut(s)	211, 660, 975
Csp6I	GTAC	2 cut(s)	202, 357
CviAII	CATG	5 cut(s)	171, 365, 640, 826, 869
CviQI	GTAC	2 cut(s)	202, 357
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	97, 967
DpnII	GATC	2 cut(s)	95, 965
DrdI	GACNNNNNNGTC	1 cut(s)	1111
DseDI	GACNNNNNNGTC	1 cut(s)	1111
EaeI	YGGCCR	2 cut(s)	562, 822
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	547
Eco31I	GGTCTC	2 cut(s)	335, 466
Eco47I	GGWCC	2 cut(s)	427, 619
Eco88I	CYCGRG	1 cut(s)	994
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	592, 940
FaeI	CATG	5 cut(s)	174, 368, 643, 829, 872
FatI	CATG	5 cut(s)	170, 364, 639, 825, 868
FauNDI	CATATG	2 cut(s)	244, 413
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	6 cut(s)	407, 565, 635, 644, 782, 1126
FokI	GGATG	3 cut(s)	785, 812, 1076
Fsp4HI	GCNGC	6 cut(s)	407, 565, 635, 644, 782, 1126
FspBI	CTAG	9 cut(s)	44, 66, 114, 227, 299, 729, 786, 830, 1121
GlaI	GCGC	2 cut(s)	128, 867
GluI	GCNGC	6 cut(s)	407, 565, 635, 644, 782, 1126
GsuI	CTGGAG	2 cut(s)	443, 882
HaeIII	GGCC	6 cut(s)	136, 547, 564, 646, 824, 1073
HapII	CCGG	3 cut(s)	797, 821, 1141
HhaI	GCGC	2 cut(s)	129, 868
Hin1II	CATG	5 cut(s)	174, 368, 643, 829, 872
Hin6I	GCGC	2 cut(s)	127, 866
HinP1I	GCGC	2 cut(s)	127, 866
HincII	GTYRAC	1 cut(s)	1134
HindII	GTYRAC	1 cut(s)	1134
HinfI	GANTC	5 cut(s)	287, 674, 692, 977, 1105
HpaII	CCGG	3 cut(s)	797, 821, 1141
HphI	GGTGA	3 cut(s)	454, 889, 973
Hpy166II	GTNNAC	3 cut(s)	576, 1134, 1148
Hpy188I	TCNGA	5 cut(s)	619, 655, 691, 697, 1044
Hpy188III	TCNNGA	3 cut(s)	44, 797, 996
Hpy8I	GTNNAC	3 cut(s)	576, 1134, 1148
Hpy99I	CGWCG	2 cut(s)	134, 619
HpyAV	CCTTC	1 cut(s)	1093
HpyCH4III	ACNGT	4 cut(s)	373, 560, 852, 1155
HpyCH4V	TGCA	9 cut(s)	16, 170, 406, 417, 490, 539, 650, 1024, 1148
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 133, 640, 643, 865, 1030, 1117
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	174, 368, 643, 829, 872
HspAI	GCGC	2 cut(s)	127, 866
Kpn2I	TCCGGA	1 cut(s)	796
Kzo9I	GATC	2 cut(s)	95, 965
LmnI	GCTCC	2 cut(s)	280, 901
Lsp1109I	GCAGC	3 cut(s)	418, 621, 768
LweI	GCATC	2 cut(s)	659, 1081
MaeI	CTAG	9 cut(s)	44, 66, 114, 227, 299, 729, 786, 830, 1121
MaeIII	GTNAC	4 cut(s)	194, 367, 442, 808
MalI	GATC	2 cut(s)	97, 967
MboI	GATC	2 cut(s)	95, 965
MfeI	CAATTG	2 cut(s)	323, 761
MflI	RGATCY	2 cut(s)	95, 965
MhlI	GDGCHC	2 cut(s)	222, 1150
MluCI	AATT	6 cut(s)	147, 308, 323, 761, 833, 906
MlyI	GAGTC	2 cut(s)	701, 1099
MmeI	TCCRAC	1 cut(s)	597
MroI	TCCGGA	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	39, 599, 909
MslI	CAYNNNNRTG	2 cut(s)	712, 1141
MspI	CCGG	3 cut(s)	797, 821, 1141
MspR9I	CCNGG	3 cut(s)	594, 821, 942
MunI	CAATTG	2 cut(s)	323, 761
MvaI	CCWGG	2 cut(s)	594, 942
MvnI	CGCG	3 cut(s)	129, 283, 866
MwoI	GCNNNNNNNGC	7 cut(s)	110, 133, 640, 643, 865, 1030, 1117
NciI	CCSGG	1 cut(s)	821
NdeI	CATATG	2 cut(s)	244, 413
NdeII	GATC	2 cut(s)	95, 965
NlaIII	CATG	5 cut(s)	174, 368, 643, 829, 872
NlaIV	GGNNCC	2 cut(s)	429, 621
NmeAIII	GCCGAG	1 cut(s)	1087
NmuCI	GTSAC	3 cut(s)	194, 367, 442
NspI	RCATGY	2 cut(s)	174, 368
OliI	CACNNNNGTG	1 cut(s)	1141
PaeI	GCATGC	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	287, 674, 977
PflMI	CCANNNNNTGG	2 cut(s)	181, 560
PfoI	TCCNGGA	2 cut(s)	592, 940
PkrI	GCNGC	6 cut(s)	408, 566, 636, 645, 783, 1127
PleI	GAGTC	2 cut(s)	700, 1099
PpsI	GAGTC	2 cut(s)	700, 1099
PpuMI	RGGWCCY	1 cut(s)	427
PshBI	ATTAAT	1 cut(s)	909
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	592, 940
PspGI	CCWGG	2 cut(s)	592, 940
PspN4I	GGNNCC	2 cut(s)	429, 621
PspPI	GGNCC	3 cut(s)	134, 427, 619
PspPPI	RGGWCCY	1 cut(s)	427
PsuI	RGATCY	2 cut(s)	95, 965
RsaI	GTAC	2 cut(s)	203, 358
RsaNI	GTAC	2 cut(s)	202, 357
RseI	CAYNNNNRTG	2 cut(s)	712, 1141
SaqAI	TTAA	3 cut(s)	39, 599, 909
SatI	GCNGC	6 cut(s)	407, 565, 635, 644, 782, 1126
Sau3AI	GATC	2 cut(s)	95, 965
Sau96I	GGNCC	3 cut(s)	134, 427, 619
SchI	GAGTC	2 cut(s)	701, 1099
ScrFI	CCNGG	3 cut(s)	594, 821, 942
SduI	GDGCHC	2 cut(s)	222, 1150
SfaNI	GCATC	2 cut(s)	659, 1081
SfcI	CTRYAG	2 cut(s)	31, 527
SinI	GGWCC	2 cut(s)	427, 619
SmiMI	CAYNNNNRTG	2 cut(s)	712, 1141
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	6 cut(s)	147, 308, 323, 761, 833, 906
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	5 cut(s)	281, 565, 643, 864, 1125
SspMI	CTAG	9 cut(s)	44, 66, 114, 227, 299, 729, 786, 830, 1121
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	3 cut(s)	592, 819, 940
TaaI	ACNGT	4 cut(s)	373, 560, 852, 1155
TaqI	TCGA	5 cut(s)	211, 222, 607, 660, 975
TaqII	GACCGA	2 cut(s)	359, 714
TasI	AATT	6 cut(s)	147, 308, 323, 761, 833, 906
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	3 cut(s)	567, 646, 1128
TfiI	GAWTC	3 cut(s)	287, 674, 977
Tru1I	TTAA	3 cut(s)	39, 599, 909
Tru9I	TTAA	3 cut(s)	39, 599, 909
TseFI	GTSAC	3 cut(s)	194, 367, 442
TseI	GCWGC	3 cut(s)	406, 634, 781
Tsp45I	GTSAC	3 cut(s)	194, 367, 442
TspDTI	ATGAA	3 cut(s)	278, 696, 1101
Van91I	CCANNNNNTGG	2 cut(s)	181, 560
VneI	GTGCAC	1 cut(s)	1146
VpaK11BI	GGWCC	2 cut(s)	427, 619
VspI	ATTAAT	1 cut(s)	909
XapI	RAATTY	1 cut(s)	308
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	2 cut(s)	174, 368
XmiI	GTMKAC	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	9 cut(s)	44, 66, 114, 227, 299, 729, 786, 830, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.