Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

26642885 .. 26656553

Gene Structure 13669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTTATGATTCTAGCTGTGTTGATGGTTTATGATATTAAGCGAGTGAACACCAATTTGGACGACAGTGACTCCGATCCTGTGAGAGACTCTTTAGAATTGGTCAAGGAAAAGCCAAACGGTACTAGATCAAGTTCTAATATATACACAATTGACTCATTGCTATTTTACGAATCGCTAACCGATATGGTATTAGGATACCGTTCCAGCCCTCCGTGCAATGGTTGGGTAAGTGAGCTTGGCATTGCTCCAGCTCAAATTAATCCTAATGGCTATAGAGTGATTATTGCTTTGATAGCTTTGTGGAACAATAAATTCGGTTGTGACCCACTCGCTGAAGTTCTTCCGTACCATTTGTCGCTTAAGAAGAACATATCGGGGACCAAGGATCCTATTGATGGTTTTTATTGTATTGTCCCCCAACGTCCTGCCATTGTACTTGAGCTTCCATCCGTGGTTAGAACTTGGAGGAGTAAGTGGTTTTATGTTAAGGGCTGGGCGTTCACTTCTAGTGGTGGAGTTCTAGCCCCCAACATTGCTACCCATTTTAAGGATGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.83

Weight (kDa)

6.72

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	71, 383, 396
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	3 cut(s)	124, 350, 438
AfiI	CCNNNNNNNGG	3 cut(s)	221, 398, 550
AflII	CTTAAG	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	5 cut(s)	17, 238, 254, 299, 445
AluI	AGCT	5 cut(s)	17, 238, 254, 299, 445
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	3 cut(s)	71, 383, 396
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	388
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BccI	CCATC	3 cut(s)	19, 392, 457
BciVI	GTATCC	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	4 cut(s)	14, 126, 510, 524
BfmI	CTRYAG	1 cut(s)	274
BfrI	CTTAAG	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	382, 390
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	384, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 398, 550
Bse3DI	GCAATG	4 cut(s)	158, 226, 243, 534
BseDI	CCNNGG	2 cut(s)	384, 453
BseGI	GGATG	2 cut(s)	449, 559
BseLI	CCNNNNNNNGG	3 cut(s)	221, 398, 550
BseMI	GCAATG	4 cut(s)	158, 226, 243, 534
BseRI	GAGGAG	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	394, 401
BslI	CCNNNNNNNGG	3 cut(s)	221, 398, 550
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	394, 401
Bsp143I	GATC	3 cut(s)	76, 128, 388
BspLI	GGNNCC	2 cut(s)	382, 390
BspPI	GGATC	3 cut(s)	71, 383, 396
BspTI	CTTAAG	1 cut(s)	362
BsrDI	GCAATG	4 cut(s)	158, 226, 243, 534
BssECI	CCNNGG	2 cut(s)	384, 453
BssMI	GATC	3 cut(s)	76, 128, 388
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	68, 122, 203
BstAFI	CTTAAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	449, 559
BstKTI	GATC	3 cut(s)	79, 131, 391
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	3 cut(s)	76, 128, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 296
BstSFI	CTRYAG	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	449, 559
BtsIMutI	CAGTG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	123, 349, 437
CviQI	GTAC	3 cut(s)	123, 349, 437
DpnI	GATC	3 cut(s)	78, 130, 390
DpnII	GATC	3 cut(s)	76, 128, 388
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaiI	YATR	8 cut(s)	8, 33, 143, 145, 188, 276, 374, 486
FaqI	GGGAC	2 cut(s)	394, 401
FokI	GGATG	1 cut(s)	436
FspBI	CTAG	4 cut(s)	14, 126, 510, 524
GsaI	CCCAGC	1 cut(s)	499
GsuI	CTGGAG	1 cut(s)	234
HinfI	GANTC	5 cut(s)	10, 71, 89, 155, 173
Hpy166II	GTNNAC	2 cut(s)	49, 504
Hpy188I	TCNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	49, 504
HpyCH4III	ACNGT	3 cut(s)	68, 122, 203
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	2 cut(s)	219, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 296
HpySE526I	ACGT	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	76, 128, 388
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	93, 220, 264, 441, 481
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	4 cut(s)	14, 126, 510, 524
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	68, 323
MalI	GATC	3 cut(s)	78, 130, 390
MboI	GATC	3 cut(s)	76, 128, 388
MboII	GAAGA	2 cut(s)	335, 379
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	5 cut(s)	55, 98, 150, 258, 314
MlyI	GAGTC	3 cut(s)	65, 83, 149
MnlI	CCTC	2 cut(s)	222, 462
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	5 cut(s)	39, 261, 363, 489, 549
MspCI	CTTAAG	1 cut(s)	362
MunI	CAATTG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	216, 296
NdeII	GATC	3 cut(s)	76, 128, 388
NlaIV	GGNNCC	2 cut(s)	382, 390
NmuCI	GTSAC	2 cut(s)	68, 323
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	10, 173
PleI	GAGTC	3 cut(s)	65, 83, 149
PpsI	GAGTC	3 cut(s)	65, 83, 149
PshBI	ATTAAT	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	382, 390
PspPI	GGNCC	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	3 cut(s)	124, 350, 438
RsaNI	GTAC	3 cut(s)	123, 349, 437
SaqAI	TTAA	5 cut(s)	39, 261, 363, 489, 549
Sau3AI	GATC	3 cut(s)	76, 128, 388
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	3 cut(s)	65, 83, 149
SetI	ASST	6 cut(s)	19, 240, 256, 301, 427, 447
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	362, 440
SmoI	CTYRAG	2 cut(s)	362, 440
Sse9I	AATT	5 cut(s)	55, 98, 150, 258, 314
SspMI	CTAG	4 cut(s)	14, 126, 510, 524
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	3 cut(s)	68, 122, 203
TaiI	ACGT	1 cut(s)	427
TasI	AATT	5 cut(s)	55, 98, 150, 258, 314
TatI	WGTACW	1 cut(s)	436
TfiI	GAWTC	2 cut(s)	10, 173
Tru1I	TTAA	5 cut(s)	39, 261, 363, 489, 549
Tru9I	TTAA	5 cut(s)	39, 261, 363, 489, 549
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	68, 323
Tsp45I	GTSAC	2 cut(s)	68, 323
TspGWI	ACGGA	3 cut(s)	204, 336, 442
TspRI	CASTG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	381
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	4 cut(s)	14, 126, 510, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.