Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

41102531 .. 41103296

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTGAGTCATAAGAGCAGTTGTCCTGTGACCTCAGTGGATATGTCATTTGGGCCTAGGTTCTGGGGCGTCGAATCTAAACGACTATGTGGTAGTAGTGAGGCAGAGAAGCTAAGATTGATTGAGGATGATGAGTTACCTAGTAGTCCTCCGGACGGGTTTGTTACTCTATACCCAGCCATGCTAGAAATGGGTGTTAGGATAGCTTTCCATCCCTCTATCCATGGTTGGGTGAGTGAGCTTGGTATTGCTCCCGCTCAAATTAATCTTAATGGCTATAGAGTGGTTATTGCGTTGATAGCTTTGTGGAATGATAAATTTGGTTGTGACCCACCACGTCTTACCGTTGTGCTTGAGCTTCCATCTATGGTTAAAACTTGGAGGGATAAGTGGTTTTATGTTAAGGATTGGGCGTTCACTCCTACTGATGGAGTTCCATTCCAGCCCTCGACATTATCACCCATTTCAAAGATGCAGGTTAAGTTGGTCATGGAAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.67

Weight (kDa)

5.9

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	3 cut(s)	155, 229, 428
AgsI	TTSAA	1 cut(s)	468
AjiI	CACGTC	1 cut(s)	338
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	6 cut(s)	112, 206, 241, 302, 358, 497
AluI	AGCT	6 cut(s)	112, 206, 241, 302, 358, 497
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	317
AseI	ATTAAT	1 cut(s)	264
AspA2I	CCTAGG	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	244, 450
AvrII	CCTAGG	1 cut(s)	56
BccI	CCATC	3 cut(s)	219, 370, 422
BfaI	CTAG	3 cut(s)	57, 141, 185
BfmI	CTRYAG	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	466
BlnI	CCTAGG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	56, 223
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 229, 428
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	56, 223
BseGI	GGATG	2 cut(s)	133, 211
BseLI	CCNNNNNNNGG	3 cut(s)	155, 229, 428
BseMII	CTCAG	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	175
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	155, 229, 428
BsnI	GGCC	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	151
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	47
BspEI	TCCGGA	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	56, 223
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	2 cut(s)	56, 223
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	34, 113, 501
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	133, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	223
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	133, 211
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	58
CviAII	CATG	3 cut(s)	181, 224, 490
DdeI	CTNAG	3 cut(s)	34, 113, 501
Eco130I	CCWWGG	2 cut(s)	56, 223
EcoT14I	CCWWGG	2 cut(s)	56, 223
ErhI	CCWWGG	2 cut(s)	56, 223
FaeI	CATG	3 cut(s)	184, 227, 493
FatI	CATG	3 cut(s)	180, 223, 489
FauI	CCCGC	1 cut(s)	262
FokI	GGATG	2 cut(s)	140, 198
FspBI	CTAG	3 cut(s)	57, 141, 185
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	184, 227, 493
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	2 cut(s)	7, 74
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	244, 450
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	34, 113, 501
HpySE526I	ACGT	1 cut(s)	337
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	184, 227, 493
Kpn2I	TCCGGA	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	39, 49, 165, 189, 455, 461
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	3 cut(s)	57, 141, 185
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	4 cut(s)	28, 135, 163, 326
MbiI	CCGCTC	1 cut(s)	257
MluCI	AATT	2 cut(s)	261, 317
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	7 cut(s)	43, 94, 118, 159, 226, 375, 457
MroI	TCCGGA	1 cut(s)	151
MseI	TTAA	5 cut(s)	264, 270, 372, 402, 480
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	223
NlaIII	CATG	3 cut(s)	184, 227, 493
NmuCI	GTSAC	2 cut(s)	28, 326
PfeI	GAWTC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	53
SaqAI	TTAA	5 cut(s)	264, 270, 372, 402, 480
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	261, 317
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	3 cut(s)	57, 141, 185
StyI	CCWWGG	2 cut(s)	56, 223
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	72, 449
TasI	AATT	2 cut(s)	261, 317
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	5 cut(s)	264, 270, 372, 402, 480
Tru9I	TTAA	5 cut(s)	264, 270, 372, 402, 480
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	28, 326
Tsp45I	GTSAC	2 cut(s)	28, 326
TspRI	CASTG	1 cut(s)	42
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmaJI	CCTAGG	1 cut(s)	56
XspI	CTAG	3 cut(s)	57, 141, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.