Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

19413649 .. 19415137

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGTCAGGGATTAGAGTCTGGCAGTTGGGGTTCCTCTACTACGTGTTCGGAGTCTAGTGGCTCCTCCTTTAAAGGGGAACTCCAAACGTTGAGTGGGAGAGGCCGTGGTCGTGTGACTTCGGTTGGCATGTTATCTGGGCCTAGTCTCCGGGGCACTTCATCTAGACGATTATGCAGCAATAGTGAGGCGTTGAGTTATTATGGTGGGTCAAAGTTGAGTAGAAAAATGCAAACAGAGGCTAGGAAACGGCTGTTGGCATATAAGGCTGCTCGTTCTCCTTGGACGGCTAACCAGGAGATGACCGAGACTAGTGTTGATGCTCTAAGAGAACTGAGGTGGAACTATCAAATACCTGACTCTGTAGAGCTAAGATTGATTGAAGATGATGAGCTGCCTAGTTGTCCTCCGGATGGGTTTGTTACTCTATACCTAGCCATGCTAGAATTAGGTATTAGGATACCGTTCCAGCCCTTTGTGCATGGTTGGGTGAGTGAGCTTGGCATTGCTCCAGCTCAAATTAGTCCTAATGGCTATAGAGTGATTATTGCTTTGATAGCATTGTGGAATGATAAATTCAGTTGTGACCCACCAATTGAAGTTCTTCGTTACCATTTGCGACTTAAGAAGAACATATCAGCGACCAAATATCCCATTGAGGGTTTTTATTGTATTGTCCCTCAACGTCTTGCCGTTATGCTTGAGCTTCCATCCGTGGCTAAAACTTGGAGGAATAAGTGGTTTTATGTTAAGGGCTGGGCGTCCACCTCTAGTGGTGGGGTTGCAGCCCCCAACATTGTTACCCATTTTAAGGATGCAGGGAAGTGGCGAAAACTTAATTCTCTCTCTAGAGTTGTGAAGGAGAGATTTGAAACTTTACTTGATCTTCTGAGAGAGGAACGACGTTTCAAGATGATTGTCACAGAAGCGAAATTGGCGAGGCTTGGGATAATAGCTCCAGCTAGAAATATGACACTTGACAAGAACGATCCTGGACTTCGTGCAAGGATTCTCCAGCAACGTCAAGCCATAAAAGGGCCAATTGTGCCCAGACCCTTGGTCCCTCCTAATGAAGACATGTCTTCACCGAGGCCCCCAAGTCCCAAGTTTCGAGCCCGACCACCCAAGCCTCCATCACCCCCTGGATTTAGGAGGGCAAAGGTCAGATCTCCCATCGATTCGTTTGAAAAAACCTCGGGAAAAAGAAGAATGAGTGAGGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

409

Amino Acids

45.71

Weight (kDa)

10.12

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	409
AclI	AACGTT	1 cut(s)	89
AclWI	GGATC	1 cut(s)	983
AcsI	RAATTY	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	761
AfiI	CCNNNNNNNGG	5 cut(s)	75, 413, 659, 811, 1035
AflII	CTTAAG	1 cut(s)	623
AflIII	ACRYGT	2 cut(s)	44, 1077
AgsI	TTSAA	5 cut(s)	383, 599, 872, 910, 1187
AhdI	GACNNNNNGTC	1 cut(s)	1058
AhlI	ACTAGT	1 cut(s)	311
AjnI	CCWGG	3 cut(s)	294, 991, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	7 cut(s)	370, 394, 499, 515, 706, 956, 962
AluI	AGCT	7 cut(s)	370, 394, 499, 515, 706, 956, 962
Alw26I	GTCTC	2 cut(s)	152, 302
AlwI	GGATC	1 cut(s)	983
Ama87I	CYCGRG	1 cut(s)	1195
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	4 cut(s)	103, 140, 1037, 1091
ApeKI	GCWGC	4 cut(s)	177, 269, 394, 785
ApoI	RAATTY	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	4 cut(s)	140, 1037, 1060, 1092
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	502, 1077, 1128
AvaI	CYCGRG	1 cut(s)	1195
AvaII	GGWCC	1 cut(s)	1060
BaeGI	GKGCMC	2 cut(s)	158, 1050
BanII	GRGCYC	1 cut(s)	1117
BbsI	GAAGAC	2 cut(s)	1074, 1080
BbvI	GCAGC	4 cut(s)	189, 256, 381, 797
BccI	CCATC	4 cut(s)	407, 718, 1141, 1181
BceAI	ACGGC	4 cut(s)	90, 266, 303, 677
BciT130I	CCWGG	3 cut(s)	296, 993, 1143
BciVI	GTATCC	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	152, 302
BcuI	ACTAGT	1 cut(s)	311
BfmI	CTRYAG	2 cut(s)	363, 535
BfrI	CTTAAG	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	453
BglII	AGATCT	1 cut(s)	1166
BisI	GCNGC	4 cut(s)	178, 270, 395, 786
BlsI	GCNGC	4 cut(s)	179, 271, 396, 787
Bme1390I	CCNGG	4 cut(s)	152, 296, 993, 1143
Bme18I	GGWCC	1 cut(s)	1060
BmeRI	GACNNNNNGTC	1 cut(s)	1058
BmeT110I	CYCGRG	1 cut(s)	1195
BmgT120I	GGNCC	4 cut(s)	140, 1037, 1060, 1092
BmiI	GGNNCC	4 cut(s)	34, 64, 1062, 1094
BmrFI	CCNGG	4 cut(s)	152, 296, 993, 1143
BmsI	GCATC	2 cut(s)	310, 805
BpiI	GAAGAC	2 cut(s)	1074, 1080
BpmI	CTGGAG	3 cut(s)	495, 942, 998
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	1176
BsaAI	YACGTR	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	761
BsaJI	CCNNGG	8 cut(s)	106, 151, 281, 714, 1056, 1088, 1141, 1194
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 413, 659, 811, 1035
Bse3DI	GCAATG	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	3 cut(s)	296, 993, 1143
BseCI	ATCGAT	1 cut(s)	1176
BseDI	CCNNGG	8 cut(s)	106, 151, 281, 714, 1056, 1088, 1141, 1194
BseGI	GGATG	3 cut(s)	418, 710, 820
BseLI	CCNNNNNNNGG	5 cut(s)	75, 413, 659, 811, 1035
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	326, 881
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	2 cut(s)	158, 1050
BseXI	GCAGC	4 cut(s)	189, 256, 381, 797
BseYI	CCCAGC	1 cut(s)	756
BshFI	GGCC	4 cut(s)	105, 142, 1039, 1093
BshVI	ATCGAT	1 cut(s)	1176
BsiHKCI	CYCGRG	1 cut(s)	1195
BsiSI	CCGG	2 cut(s)	151, 410
BslFI	GGGAC	3 cut(s)	662, 1046, 1086
BslI	CCNNNNNNNGG	5 cut(s)	75, 413, 659, 811, 1035
BsmAI	GTCTC	2 cut(s)	152, 302
BsmFI	GGGAC	3 cut(s)	662, 1046, 1086
BsnI	GGCC	4 cut(s)	105, 142, 1039, 1093
BsoBI	CYCGRG	1 cut(s)	1195
Bsp1286I	GDGCHC	3 cut(s)	158, 1050, 1117
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	883, 988, 1166
BspANI	GGCC	4 cut(s)	105, 142, 1039, 1093
BspCNI	CTCAG	2 cut(s)	327, 882
BspDI	ATCGAT	1 cut(s)	1176
BspEI	TCCGGA	1 cut(s)	409
BspLI	GGNNCC	4 cut(s)	34, 64, 1062, 1094
BspPI	GGATC	1 cut(s)	983
BspTI	CTTAAG	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	504
BssECI	CCNNGG	8 cut(s)	106, 151, 281, 714, 1056, 1088, 1141, 1194
BssMI	GATC	3 cut(s)	883, 988, 1166
BssNI	GRCGYC	1 cut(s)	761
BssT1I	CCWWGG	2 cut(s)	281, 1056
Bst2UI	CCWGG	3 cut(s)	296, 993, 1143
Bst4CI	ACNGT	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	761
BstAFI	CTTAAG	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	45
BstDEI	CTNAG	4 cut(s)	326, 335, 371, 890
BstDSI	CCRYGG	2 cut(s)	106, 714
BstF5I	GGATG	3 cut(s)	418, 710, 820
BstKTI	GATC	3 cut(s)	886, 991, 1169
BstMAI	GTCTC	2 cut(s)	152, 302
BstMBI	GATC	3 cut(s)	883, 988, 1166
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 478, 557, 935, 1045
BstNI	CCWGG	3 cut(s)	296, 993, 1143
BstNSI	RCATGY	2 cut(s)	133, 1081
BstSCI	CCNGG	4 cut(s)	150, 294, 991, 1141
BstSFI	CTRYAG	2 cut(s)	363, 535
BstSLI	GKGCMC	2 cut(s)	158, 1050
BstV1I	GCAGC	4 cut(s)	189, 256, 381, 797
BstV2I	GAAGAC	2 cut(s)	1074, 1080
BstX2I	RGATCY	1 cut(s)	1166
BstXI	CCANNNNNNTGG	1 cut(s)	1057
BstYI	RGATCY	1 cut(s)	1166
Bsu15I	ATCGAT	1 cut(s)	1176
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	4 cut(s)	105, 142, 1039, 1093
BsuTUI	ATCGAT	1 cut(s)	1176
BtgI	CCRYGG	2 cut(s)	106, 714
BtsCI	GGATG	3 cut(s)	418, 710, 820
Cfr13I	GGNCC	4 cut(s)	140, 1037, 1060, 1092
ClaI	ATCGAT	1 cut(s)	1176
CseI	GACGC	1 cut(s)	750
CviAII	CATG	4 cut(s)	130, 439, 482, 1078
DdeI	CTNAG	4 cut(s)	326, 335, 371, 890
DpnI	GATC	3 cut(s)	885, 990, 1168
DpnII	GATC	3 cut(s)	883, 988, 1166
DraI	TTTAAA	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	1058
Eam1105I	GACNNNNNGTC	1 cut(s)	1058
Eco130I	CCWWGG	2 cut(s)	281, 1056
Eco24I	GRGCYC	1 cut(s)	1117
Eco47I	GGWCC	1 cut(s)	1060
Eco88I	CYCGRG	1 cut(s)	1195
EcoO109I	RGGNCCY	1 cut(s)	1092
EcoRII	CCWGG	3 cut(s)	294, 991, 1141
EcoT14I	CCWWGG	2 cut(s)	281, 1056
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	2 cut(s)	281, 1056
FaeI	CATG	4 cut(s)	133, 442, 485, 1081
FaqI	GGGAC	3 cut(s)	662, 1046, 1086
FatI	CATG	4 cut(s)	129, 438, 481, 1077
Fnu4HI	GCNGC	4 cut(s)	178, 270, 395, 786
FokI	GGATG	3 cut(s)	425, 697, 827
FriOI	GRGCYC	1 cut(s)	1117
Fsp4HI	GCNGC	4 cut(s)	178, 270, 395, 786
GluI	GCNGC	4 cut(s)	178, 270, 395, 786
GsaI	CCCAGC	1 cut(s)	760
GsuI	CTGGAG	3 cut(s)	495, 942, 998
HaeIII	GGCC	4 cut(s)	105, 142, 1039, 1093
HapII	CCGG	2 cut(s)	151, 410
HgaI	GACGC	1 cut(s)	750
Hin1I	GRCGYC	1 cut(s)	761
Hin1II	CATG	4 cut(s)	133, 442, 485, 1081
HinfI	GANTC	5 cut(s)	17, 53, 359, 1009, 1178
HpaII	CCGG	2 cut(s)	151, 410
HphI	GGTGA	3 cut(s)	502, 1077, 1128
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	3 cut(s)	52, 891, 1166
Hpy188III	TCNNGA	5 cut(s)	165, 410, 849, 910, 1197
Hpy8I	GTNNAC	1 cut(s)	765
Hpy99I	CGWCG	1 cut(s)	906
HpyAV	CCTTC	1 cut(s)	853
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	5 cut(s)	44, 89, 685, 904, 1021
HpyCH4V	TGCA	6 cut(s)	177, 232, 481, 785, 818, 1004
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 478, 557, 935, 1045
HpyF3I	CTNAG	4 cut(s)	326, 335, 371, 890
HpySE526I	ACGT	5 cut(s)	44, 89, 685, 904, 1021
Hsp92I	GRCGYC	1 cut(s)	761
Hsp92II	CATG	4 cut(s)	133, 442, 485, 1081
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	883, 988, 1166
LmnI	GCTCC	3 cut(s)	68, 514, 961
Lsp1109I	GCAGC	4 cut(s)	189, 256, 381, 797
LweI	GCATC	2 cut(s)	310, 805
MaeII	ACGT	5 cut(s)	44, 89, 685, 904, 1021
MaeIII	GTNAC	6 cut(s)	115, 421, 584, 608, 799, 919
MalI	GATC	3 cut(s)	885, 990, 1168
MboI	GATC	3 cut(s)	883, 988, 1166
MboII	GAAGA	7 cut(s)	395, 596, 640, 878, 1074, 1085, 1218
MfeI	CAATTG	2 cut(s)	594, 1041
MflI	RGATCY	1 cut(s)	1166
MhlI	GDGCHC	3 cut(s)	158, 1050, 1117
MluCI	AATT	7 cut(s)	446, 519, 575, 594, 838, 932, 1041
MlyI	GAGTC	3 cut(s)	26, 62, 353
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	5 cut(s)	72, 624, 750, 810, 837
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	2 cut(s)	151, 410
MspR9I	CCNGG	4 cut(s)	152, 296, 993, 1143
MunI	CAATTG	2 cut(s)	594, 1041
MvaI	CCWGG	3 cut(s)	296, 993, 1143
MwoI	GCNNNNNNNGC	5 cut(s)	266, 478, 557, 935, 1045
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	883, 988, 1166
NlaIII	CATG	4 cut(s)	133, 442, 485, 1081
NlaIV	GGNNCC	4 cut(s)	34, 64, 1062, 1094
NmuCI	GTSAC	3 cut(s)	115, 584, 919
NspI	RCATGY	2 cut(s)	133, 1081
PciI	ACATGT	1 cut(s)	1077
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	1009, 1178
PfoI	TCCNGGA	1 cut(s)	991
PkrI	GCNGC	4 cut(s)	179, 271, 396, 787
PleI	GAGTC	3 cut(s)	25, 61, 353
PpsI	GAGTC	3 cut(s)	25, 61, 353
Ppu21I	YACGTR	1 cut(s)	45
PscI	ACATGT	1 cut(s)	1077
Psp1406I	AACGTT	1 cut(s)	89
Psp6I	CCWGG	3 cut(s)	294, 991, 1141
PspFI	CCCAGC	1 cut(s)	756
PspGI	CCWGG	3 cut(s)	294, 991, 1141
PspN4I	GGNNCC	4 cut(s)	34, 64, 1062, 1094
PspPI	GGNCC	4 cut(s)	140, 1037, 1060, 1092
PsuI	RGATCY	1 cut(s)	1166
SaqAI	TTAA	5 cut(s)	72, 624, 750, 810, 837
SatI	GCNGC	4 cut(s)	178, 270, 395, 786
Sau3AI	GATC	3 cut(s)	883, 988, 1166
Sau96I	GGNCC	4 cut(s)	140, 1037, 1060, 1092
SchI	GAGTC	3 cut(s)	26, 62, 353
ScrFI	CCNGG	4 cut(s)	152, 296, 993, 1143
SduI	GDGCHC	3 cut(s)	158, 1050, 1117
SfaNI	GCATC	2 cut(s)	310, 805
SfcI	CTRYAG	2 cut(s)	363, 535
SinI	GGWCC	1 cut(s)	1060
SmlI	CTYRAG	2 cut(s)	623, 701
SmoI	CTYRAG	2 cut(s)	623, 701
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	7 cut(s)	446, 519, 575, 594, 838, 932, 1041
StyD4I	CCNGG	4 cut(s)	150, 294, 991, 1141
StyI	CCWWGG	2 cut(s)	281, 1056
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	5 cut(s)	47, 92, 688, 907, 1024
TaqI	TCGA	2 cut(s)	1111, 1176
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	7 cut(s)	446, 519, 575, 594, 838, 932, 1041
TfiI	GAWTC	2 cut(s)	1009, 1178
Tru1I	TTAA	5 cut(s)	72, 624, 750, 810, 837
Tru9I	TTAA	5 cut(s)	72, 624, 750, 810, 837
TseFI	GTSAC	3 cut(s)	115, 584, 919
TseI	GCWGC	4 cut(s)	177, 269, 394, 785
Tsp45I	GTSAC	3 cut(s)	115, 584, 919
TspDTI	ATGAA	2 cut(s)	150, 1086
TspGWI	ACGGA	1 cut(s)	703
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	1060
XapI	RAATTY	1 cut(s)	575
XbaI	TCTAGA	2 cut(s)	164, 848
XceI	RCATGY	2 cut(s)	133, 1081
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.