Rmu_sc0015523.1_g000014

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015523.1
Physical Location & Seq
Forward (+)
55079 .. 56784
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015523.1_g000014.1.cds

Sequence Viewer

Length: 1410 bp
ctgaggtggaactatcaaatacctgactccgtagagctaagattgattgaggatgacgagttacctagtagtcctccgggtgggtttgttactctatacccagccatgctagaattaggtattaggataccattccagctctccgtgcatggttgggtgagtgagcttggcattgttccagctcagattaatcctaatggctatagactaattattgctttgatagcattatggaacgataaattcaaatgtgacccaccagttgaaattcttcattaccatttgaggcttaagaagaacatatcagcaaccaaggatactattgagggtttttattgtattgtccctcaacgtcctgctattgtacttgagcttccatctatggttaaaacttggaggaataagtggttttatgttaagggctgggcgtctacctctagtgggaagtggcgaaaaccgaatttcctttctagagttgcgaaggagagattcgaaactttgcttgatcttccgagggaggaacgacgttttaagtcgattgtcacggaagtaaaattgggcgggcttgggatagcagctctagccagaaacatgacacttgacaagaacgatcctggacttcatgcaaggattctccagcaacgtcaagccataaaggggccaattgtgcccagacccttggtccctcctaatgaaggcatgtcttcacctaggcccccaagtcccaagtttcgggcccgaccacccaggccttcatcacctcctggatttaggagggcatcgatcagatctcccatcgattcgtttaaaaaagctttgggtaaaagaaaaatgagtgaagaggcgcagggtaagcaagaccttctcaagaagaaaatgagggtggatgatgaggtcgaaaatctcatggaagatgcccggagggagactcggcagtctaaggctaggcagcgagttgacactctaggtgtgcgctaccgtcaagttgacgttccagaatttctttctgattacgatggggacatgatggggcttgttgatactaaggcttatgctacaaattttggggagggcgaactcgagggagaacttgattcccttgtggaaggggctaagagttctttgattttggccaatttgaaaaatcatctcatacttgacaagatggcggagaggattcgtgaattggattcccagatgcttgcagccaacaaggagctgaaggcgactaagactcagctcggtcaaaagaagaaggatatggctaaaatagaggattatcacaaaagactgaaggaaaaagagacggaggttgatcagttgggagaaaaggttaagggcctggagaaggaactcagggttaaggccaaagagtgtaagaacagcaaggatttggtggtggaaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

53.46

Weight (kDa)

9.55

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 934
AccI GTMKAC 1 cut(s) 431
AciI CCGC 2 cut(s) 561, 1169
AclWI GGATC 1 cut(s) 605
AcoI YGGCCR 1 cut(s) 1131
AcsI RAATTY 5 cut(s) 242, 267, 460, 998, 1060
AcuI CTGAAG 2 cut(s) 1241, 1313
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 6 cut(s) 80, 441, 657, 695, 732, 1348
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 247, 266, 1141
AhdI GACNNNNNGTC 1 cut(s) 680
AjnI CCWGG 4 cut(s) 613, 746, 763, 1341
AluBI AGCT 9 cut(s) 37, 139, 166, 182, 373, 578, 815, 1219, 1240
AluI AGCT 9 cut(s) 37, 139, 166, 182, 373, 578, 815, 1219, 1240
Alw26I GTCTC 2 cut(s) 920, 1298
AlwI GGATC 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 1079
AoxI GGCC 7 cut(s) 659, 713, 735, 749, 1131, 1339, 1365
ApaI GGGCCC 1 cut(s) 739
ApeKI GCWGC 3 cut(s) 575, 949, 1205
ApoI RAATTY 5 cut(s) 242, 267, 460, 998, 1060
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 270
AspA2I CCTAGG 1 cut(s) 710
AspLEI GCGC 2 cut(s) 847, 975
AspS9I GGNCC 6 cut(s) 659, 682, 714, 735, 736, 1339
AsuC2I CCSGG 2 cut(s) 78, 919
AsuHPI GGTGA 3 cut(s) 169, 699, 750
AsuII TTCGAA 1 cut(s) 492
AvaI CYCGRG 1 cut(s) 1079
AvaII GGWCC 1 cut(s) 682
AvrII CCTAGG 1 cut(s) 710
BaeGI GKGCMC 2 cut(s) 672, 739
BalI TGGCCA 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 739
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BbsI GAAGAC 1 cut(s) 696
BbvI GCAGC 3 cut(s) 587, 961, 1217
BccI CCATC 5 cut(s) 385, 803, 1010, 1021, 1159
BciT130I CCWGG 4 cut(s) 615, 748, 765, 1343
BciVI GTATCC 2 cut(s) 120, 310
BclI TGATCA 1 cut(s) 1315
BcnI CCSGG 2 cut(s) 78, 919
BcoDI GTCTC 2 cut(s) 920, 1298
BfaI CTAG 9 cut(s) 66, 110, 438, 471, 581, 711, 945, 965, 1408
BfmI CTRYAG 1 cut(s) 202
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 2 cut(s) 120, 310
BglII AGATCT 1 cut(s) 788
BisI GCNGC 3 cut(s) 576, 950, 1206
BlnI CCTAGG 1 cut(s) 710
BlsI GCNGC 3 cut(s) 577, 951, 1207
Bme1390I CCNGG 6 cut(s) 78, 615, 748, 765, 919, 1343
Bme18I GGWCC 1 cut(s) 682
BmeRI GACNNNNNGTC 1 cut(s) 680
BmeT110I CYCGRG 1 cut(s) 1079
BmgT120I GGNCC 6 cut(s) 659, 682, 714, 735, 736, 1339
BmiI GGNNCC 4 cut(s) 660, 684, 716, 737
BmrFI CCNGG 6 cut(s) 78, 615, 748, 765, 919, 1343
BmsI GCATC 3 cut(s) 788, 904, 1188
BpiI GAAGAC 1 cut(s) 696
BplI GAGNNNNNCTC 2 cut(s) 913, 945
BpmI CTGGAG 2 cut(s) 620, 1364
Bpu14I TTCGAA 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 389, 851
BpuMI CCSGG 2 cut(s) 78, 919
Bsa29I ATCGAT 2 cut(s) 782, 798
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 5 cut(s) 312, 512, 678, 710, 746
BsaXI ACNNNNNCTCC 2 cut(s) 1317, 1347
Bsc4I CCNNNNNNNGG 6 cut(s) 80, 441, 657, 695, 732, 1348
Bse1I ACTGG 1 cut(s) 260
BseBI CCWGG 4 cut(s) 615, 748, 765, 1343
BseCI ATCGAT 2 cut(s) 782, 798
BseDI CCNNGG 5 cut(s) 312, 512, 678, 710, 746
BseGI GGATG 2 cut(s) 58, 892
BseLI CCNNNNNNNGG 6 cut(s) 80, 441, 657, 695, 732, 1348
BseMII CTCAG 3 cut(s) 197, 1250, 1369
BseNI ACTGG 1 cut(s) 260
BseSI GKGCMC 2 cut(s) 672, 739
BseXI GCAGC 3 cut(s) 587, 961, 1217
BseYI CCCAGC 2 cut(s) 100, 423
BshFI GGCC 7 cut(s) 661, 715, 737, 751, 1133, 1341, 1367
BshVI ATCGAT 2 cut(s) 782, 798
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 2 cut(s) 77, 919
BslFI GGGAC 4 cut(s) 329, 668, 708, 1034
BslI CCNNNNNNNGG 6 cut(s) 80, 441, 657, 695, 732, 1348
BsmAI GTCTC 2 cut(s) 920, 1298
BsmBI CGTCTC 1 cut(s) 1298
BsmFI GGGAC 4 cut(s) 329, 668, 708, 1034
BsnI GGCC 7 cut(s) 661, 715, 737, 751, 1133, 1341, 1367
BsoBI CYCGRG 1 cut(s) 1079
Bsp119I TTCGAA 1 cut(s) 492
Bsp120I GGGCCC 1 cut(s) 735
Bsp1286I GDGCHC 2 cut(s) 672, 739
Bsp143I GATC 5 cut(s) 505, 610, 783, 788, 1315
BspACI CCGC 2 cut(s) 561, 1169
BspANI GGCC 7 cut(s) 661, 715, 737, 751, 1133, 1341, 1367
BspCNI CTCAG 3 cut(s) 196, 1249, 1368
BspDI ATCGAT 2 cut(s) 782, 798
BspLI GGNNCC 4 cut(s) 660, 684, 716, 737
BspPI GGATC 1 cut(s) 605
BspT104I TTCGAA 1 cut(s) 492
BspTI CTTAAG 1 cut(s) 290
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 5 cut(s) 312, 512, 678, 710, 746
BssMI GATC 5 cut(s) 505, 610, 783, 788, 1315
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 3 cut(s) 312, 678, 710
Bst2UI CCWGG 4 cut(s) 615, 748, 765, 1343
Bst4CI ACNGT 1 cut(s) 980
Bst6I CTCTTC 1 cut(s) 834
BstACI GRCGYC 1 cut(s) 428
BstAFI CTTAAG 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 563, 1203
BstDEI CTNAG 9 cut(s) 2, 38, 183, 939, 1044, 1113, 1230, 1236, 1355
BstENI CCTNNNNNAGG 2 cut(s) 693, 1346
BstF5I GGATG 2 cut(s) 58, 892
BstHHI GCGC 2 cut(s) 847, 975
BstKTI GATC 5 cut(s) 508, 613, 786, 791, 1318
BstMAI GTCTC 2 cut(s) 920, 1298
BstMBI GATC 5 cut(s) 505, 610, 783, 788, 1315
BstMWI GCNNNNNNNGC 5 cut(s) 145, 224, 581, 667, 853
BstNI CCWGG 4 cut(s) 615, 748, 765, 1343
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 6 cut(s) 76, 613, 746, 763, 917, 1341
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 2 cut(s) 672, 739
BstV1I GCAGC 3 cut(s) 587, 961, 1217
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 1 cut(s) 788
BstXI CCANNNNNNTGG 1 cut(s) 679
BstYI RGATCY 1 cut(s) 788
Bsu15I ATCGAT 2 cut(s) 782, 798
BsuI GTATCC 2 cut(s) 120, 310
BsuRI GGCC 7 cut(s) 661, 715, 737, 751, 1133, 1341, 1367
BsuTUI ATCGAT 2 cut(s) 782, 798
BtsCI GGATG 2 cut(s) 58, 892
Cac8I GCNNGC 2 cut(s) 563, 1203
CfoI GCGC 2 cut(s) 847, 975
Cfr13I GGNCC 6 cut(s) 659, 682, 714, 735, 736, 1339
ClaI ATCGAT 2 cut(s) 782, 798
CseI GACGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 365
CviAII CATG 7 cut(s) 106, 149, 592, 623, 700, 907, 1024
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 9 cut(s) 2, 38, 183, 939, 1044, 1113, 1230, 1236, 1355
DpnI GATC 5 cut(s) 507, 612, 785, 790, 1317
DpnII GATC 5 cut(s) 505, 610, 783, 788, 1315
DraI TTTAAA 1 cut(s) 808
DrdI GACNNNNNNGTC 1 cut(s) 934
DriI GACNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 1 cut(s) 1131
Eam1104I CTCTTC 1 cut(s) 834
Eam1105I GACNNNNNGTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 834
EciI GGCGGA 1 cut(s) 1184
Eco130I CCWWGG 3 cut(s) 312, 678, 710
Eco147I AGGCCT 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 739
Eco47I GGWCC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 1241, 1313
Eco88I CYCGRG 1 cut(s) 1079
EcoNI CCTNNNNNAGG 2 cut(s) 693, 1346
EcoO109I RGGNCCY 2 cut(s) 714, 1339
EcoRII CCWGG 4 cut(s) 613, 746, 763, 1341
EcoT14I CCWWGG 3 cut(s) 312, 678, 710
EcoT38I GRGCYC 1 cut(s) 739
ErhI CCWWGG 3 cut(s) 312, 678, 710
Esp3I CGTCTC 1 cut(s) 1298
FaeI CATG 7 cut(s) 109, 152, 595, 626, 703, 910, 1027
FaqI GGGAC 4 cut(s) 329, 668, 708, 1034
FatI CATG 7 cut(s) 105, 148, 591, 622, 699, 906, 1023
FauI CCCGC 1 cut(s) 554
FbaI TGATCA 1 cut(s) 1315
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 3 cut(s) 576, 950, 1206
FokI GGATG 2 cut(s) 65, 899
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 3 cut(s) 576, 950, 1206
FspBI CTAG 9 cut(s) 66, 110, 438, 471, 581, 711, 945, 965, 1408
GlaI GCGC 2 cut(s) 846, 974
GluI GCNGC 3 cut(s) 576, 950, 1206
GsaI CCCAGC 2 cut(s) 104, 427
GsuI CTGGAG 2 cut(s) 620, 1364
HaeIII GGCC 7 cut(s) 661, 715, 737, 751, 1133, 1341, 1367
HapII CCGG 2 cut(s) 77, 919
HgaI GACGC 1 cut(s) 417
HhaI GCGC 2 cut(s) 847, 975
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 7 cut(s) 109, 152, 595, 626, 703, 910, 1027
Hin6I GCGC 2 cut(s) 845, 973
HinP1I GCGC 2 cut(s) 845, 973
HincII GTYRAC 2 cut(s) 958, 988
HindII GTYRAC 2 cut(s) 958, 988
HindIII AAGCTT 1 cut(s) 813
HinfI GANTC 9 cut(s) 26, 489, 631, 800, 928, 1094, 1177, 1190, 1234
HpaII CCGG 2 cut(s) 77, 919
HphI GGTGA 3 cut(s) 169, 699, 750
Hpy166II GTNNAC 3 cut(s) 432, 958, 988
Hpy188I TCNGA 4 cut(s) 186, 513, 788, 1009
Hpy188III TCNNGA 4 cut(s) 471, 868, 995, 1181
Hpy8I GTNNAC 3 cut(s) 432, 958, 988
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 9 cut(s) 475, 689, 762, 872, 1100, 1216, 1249, 1288, 1342
HpyCH4III ACNGT 1 cut(s) 980
HpyCH4IV ACGT 4 cut(s) 352, 526, 643, 990
HpyCH4V TGCA 3 cut(s) 148, 626, 1205
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 224, 581, 667, 853
HpyF3I CTNAG 9 cut(s) 2, 38, 183, 939, 1044, 1113, 1230, 1236, 1355
HpySE526I ACGT 4 cut(s) 352, 526, 643, 990
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 7 cut(s) 109, 152, 595, 626, 703, 910, 1027
HspAI GCGC 2 cut(s) 845, 973
Ksp22I TGATCA 1 cut(s) 1315
Kzo9I GATC 5 cut(s) 505, 610, 783, 788, 1315
LmnI GCTCC 1 cut(s) 1216
Lsp1109I GCAGC 3 cut(s) 587, 961, 1217
LweI GCATC 3 cut(s) 788, 904, 1188
MaeI CTAG 9 cut(s) 66, 110, 438, 471, 581, 711, 945, 965, 1408
MaeII ACGT 4 cut(s) 352, 526, 643, 990
MaeIII GTNAC 4 cut(s) 60, 88, 251, 541
MalI GATC 5 cut(s) 507, 612, 785, 790, 1317
MboI GATC 5 cut(s) 505, 610, 783, 788, 1315
MboII GAAGA 8 cut(s) 263, 307, 500, 696, 851, 883, 923, 1264
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 2 cut(s) 672, 739
MlsI TGGCCA 1 cut(s) 1133
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 3 cut(s) 20, 922, 1228
Mox20I TGGCCA 1 cut(s) 1133
MroXI GAANNNNTTC 1 cut(s) 270
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 8 cut(s) 189, 291, 387, 417, 531, 807, 1335, 1362
Msp20I TGGCCA 1 cut(s) 1133
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 2 cut(s) 77, 919
MspR9I CCNGG 6 cut(s) 78, 615, 748, 765, 919, 1343
MunI CAATTG 1 cut(s) 663
MvaI CCWGG 4 cut(s) 615, 748, 765, 1343
MwoI GCNNNNNNNGC 5 cut(s) 145, 224, 581, 667, 853
NciI CCSGG 2 cut(s) 78, 919
NdeII GATC 5 cut(s) 505, 610, 783, 788, 1315
NlaIII CATG 7 cut(s) 109, 152, 595, 626, 703, 910, 1027
NlaIV GGNNCC 4 cut(s) 660, 684, 716, 737
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 2 cut(s) 251, 541
NspI RCATGY 1 cut(s) 703
NspV TTCGAA 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 1079
PceI AGGCCT 1 cut(s) 751
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 6 cut(s) 489, 631, 800, 1094, 1177, 1190
PfoI TCCNGGA 2 cut(s) 613, 763
PkrI GCNGC 3 cut(s) 577, 951, 1207
PleI GAGTC 3 cut(s) 20, 922, 1228
PpsI GAGTC 3 cut(s) 20, 922, 1228
PshBI ATTAAT 1 cut(s) 189
Psp6I CCWGG 4 cut(s) 613, 746, 763, 1341
PspFI CCCAGC 2 cut(s) 100, 423
PspGI CCWGG 4 cut(s) 613, 746, 763, 1341
PspN4I GGNNCC 4 cut(s) 660, 684, 716, 737
PspOMI GGGCCC 1 cut(s) 735
PspPI GGNCC 6 cut(s) 659, 682, 714, 735, 736, 1339
PspXI VCTCGAGB 1 cut(s) 1079
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 8 cut(s) 189, 291, 387, 417, 531, 807, 1335, 1362
SatI GCNGC 3 cut(s) 576, 950, 1206
Sau3AI GATC 5 cut(s) 505, 610, 783, 788, 1315
Sau96I GGNCC 6 cut(s) 659, 682, 714, 735, 736, 1339
SchI GAGTC 3 cut(s) 20, 922, 1228
ScrFI CCNGG 6 cut(s) 78, 615, 748, 765, 919, 1343
SduI GDGCHC 2 cut(s) 672, 739
SfaNI GCATC 3 cut(s) 788, 904, 1188
SfcI CTRYAG 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 1079
SfuI TTCGAA 1 cut(s) 492
SinI GGWCC 1 cut(s) 682
SlaI CTCGAG 1 cut(s) 1079
SmlI CTYRAG 4 cut(s) 290, 368, 866, 1079
SmoI CTYRAG 4 cut(s) 290, 368, 866, 1079
SseBI AGGCCT 1 cut(s) 751
SsiI CCGC 2 cut(s) 561, 1169
SspMI CTAG 9 cut(s) 66, 110, 438, 471, 581, 711, 945, 965, 1408
StuI AGGCCT 1 cut(s) 751
StyD4I CCNGG 6 cut(s) 76, 613, 746, 763, 917, 1341
StyI CCWWGG 3 cut(s) 312, 678, 710
TaaI ACNGT 1 cut(s) 980
TaiI ACGT 4 cut(s) 355, 529, 646, 993
TaqI TCGA 6 cut(s) 492, 536, 782, 798, 897, 1080
TaqII GACCGA 1 cut(s) 1232
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 6 cut(s) 489, 631, 800, 1094, 1177, 1190
Tru1I TTAA 8 cut(s) 189, 291, 387, 417, 531, 807, 1335, 1362
Tru9I TTAA 8 cut(s) 189, 291, 387, 417, 531, 807, 1335, 1362
TseFI GTSAC 2 cut(s) 251, 541
TseI GCWGC 3 cut(s) 575, 949, 1205
Tsp45I GTSAC 2 cut(s) 251, 541
TspDTI ATGAA 4 cut(s) 263, 611, 708, 744
TspGWI ACGGA 4 cut(s) 19, 133, 560, 1322
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 682
VspI ATTAAT 1 cut(s) 189
XagI CCTNNNNNAGG 2 cut(s) 693, 1346
XapI RAATTY 5 cut(s) 242, 267, 460, 998, 1060
XbaI TCTAGA 1 cut(s) 470
XceI RCATGY 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 1079
XmaJI CCTAGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 9 cut(s) 66, 110, 438, 471, 581, 711, 945, 965, 1408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.