FvH4_2g19120

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
16307207 .. 16309454
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19120.t1

Sequence Viewer

Length: 1536 bp
ATGTCTTTCTTTCATGGATCTCCAACTCTCTTGTTTGTTTCTTCTTTTGCTTTTAGGACAGAGGTGTTGGTGGCTCGTGGGTTCATGGTGAACTCTAAGAGTGGAGATGATGACCTGAGTGAGGGACATCACGAGTCCCGCACTGTTTCCGACGAGCGGGAGATGACGGCTTCGTCGACAAATGGCGTAGGCGTTGCCGGGTCAGTTTCCCCTATTCATGGGTCTGGTAGTGAGTCCTTGTCATCGTCCTCAACTGACCTAGAACAGTCTGCGATAGGTAGAAAGGCACTAACTGAGGTTAAGAGGGAGTTGTTGGCTTATAGGTCCACTCGCTTTCGGTGGACTGCCGACCAAGAGTTTATCGAGACTAGTATTGAAGCCTTGAATGAGCTGAGGGTTCCCCTCCAGCGGGTGATTCAGGAGTGGTTGAGCGAGCTCGACGTTGCTCCTGCCCAGATCAACACCAATTGTTATAGGATGGGTTGGTCAGCTGCTACCAAGAAAAACGGGGATCCAGGTCCTGAAATTGGAACTTGTTTTAAAGATGCAGGTGTAGAAGACATGACGCTTGACAAGAATGATCCAGGCTTCCAGGCAAAGATTCTCAACCAGCGACAAGTCATTACATGGCCCTTAACACCTAAGCCTTTCGTTCGTTCTACTTCTACTAGGGGCGCACCTTCTCCTTTGCCCTCACAATCCAAGCCTGAGTCTTGGTCTGTCAGGGACGCATCACTCTCTAGTGGTCATAGAGGTTCTCCTAAGCCTTCGTTTGACCTTTCTGACAAGGCTTCTGGAAAGAAGAAGATGGGTGATGAGGGACTGTCAAGGCCGAAAGTTCAAAAGAAGAAACTGATAGTGGAAGGTCAAGAGGAAGGGTTCATGATGGATGCTCGGAGAGAGTCTCGAAAACATGGGGATTCTCCGGCACACTTACGCATGATTGGGGTCCCAGACTTTCTTTTCGCTTACATTGAAGACGTGGTCGAAATAGTTGATTCCAAGTCCTTCATGGCTGAATTTGGGGAGAAAGAGCTCGAGGGCAAGCTTGACTTCCTGTTGGATGGAGCTAAGGGTTTGATGCTCAAGGTCGGAGTGAAGGTTCACCTCATAATTGACAGAATGGCAGGTAGGATTCGTGAGCTGGATTCTCTGGTTTCTGAGGCTAACAAAGAGCTCGTGGAGACTAGGACTCAGTTGGACCAAGGGAAGAAAGAAATGGCCAAGCTGGCGAGTTGTCAAAAAAGACTGAAGGAAAAAGAAGAGGAAACTAGCCGGATGGCGGAAAAAATCAAGCATCTTGAAAGTTTTAAAGTCAAGGAATGTAAGCGAAAAGAGGATTTGGAACTGGTAATCCAAGGGCTTAAAGACAAGGTCATGGGTCTTAAGGATCAATCTGCAGTTAAGGAAAATGAGTATCTGCTGAAGTTCCAGGGATCCCAGGAATACAAGAATACTTTAGAGGCCAGCTACCTTGACGGTTTTGATGATCTACTTAGCCAGTGCTTTGAAAATGAAAACCATGCTTATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

512

Amino Acids

57.06

Weight (kDa)

5.95

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1530
AarI CACCTGC 1 cut(s) 539
AasI GACNNNNNNGTC 1 cut(s) 172
Acc36I ACCTGC 2 cut(s) 539, 1118
AccBSI CCGCTC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 176
AciI CCGC 4 cut(s) 139, 157, 409, 1283
AclWI GGATC 7 cut(s) 25, 506, 519, 575, 1398, 1431, 1444
AcoI YGGCCR 1 cut(s) 1221
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 2 cut(s) 1271, 1445
AfiI CCNNNNNNNGG 7 cut(s) 121, 156, 218, 408, 409, 527, 1282
AflII CTTAAG 1 cut(s) 1385
AgsI TTSAA 6 cut(s) 377, 385, 842, 977, 1304, 1511
AhlI ACTAGT 1 cut(s) 368
AjiI CACGTC 1 cut(s) 982
AjnI CCWGG 5 cut(s) 514, 583, 591, 1431, 1440
AloI GAACNNNNNNTCC 4 cut(s) 1086, 1118, 1338, 1370
Alw21I GWGCWC 3 cut(s) 438, 1038, 1179
Alw26I GTCTC 3 cut(s) 359, 909, 1178
AlwI GGATC 7 cut(s) 25, 506, 519, 575, 1398, 1431, 1444
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 1037
AoxI GGCC 4 cut(s) 629, 830, 1221, 1464
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 1 cut(s) 1019
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 5 cut(s) 324, 518, 630, 949, 1201
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 4 cut(s) 100, 424, 824, 1097
AvaI CYCGRG 1 cut(s) 1037
AvaII GGWCC 4 cut(s) 324, 518, 949, 1201
BalI TGGCCA 1 cut(s) 1223
BamHI GGATCC 2 cut(s) 511, 1436
BanII GRGCYC 3 cut(s) 438, 1038, 1179
BauI CACGAG 3 cut(s) 75, 131, 1178
BbsI GAAGAC 2 cut(s) 564, 984
Bbv12I GWGCWC 3 cut(s) 438, 1038, 1179
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 478
BccI CCATC 5 cut(s) 472, 802, 880, 1058, 1273
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 5 cut(s) 516, 585, 593, 1433, 1442
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 359, 909, 1178
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 6 cut(s) 260, 369, 669, 741, 1188, 1272
BfmI CTRYAG 1 cut(s) 1398
BfrI CTTAAG 1 cut(s) 1385
BfuAI ACCTGC 2 cut(s) 539, 1118
BglI GCCNNNNNGGC 1 cut(s) 1229
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
Bme1390I CCNGG 6 cut(s) 199, 516, 585, 593, 1433, 1442
Bme18I GGWCC 4 cut(s) 324, 518, 949, 1201
BmeT110I CYCGRG 1 cut(s) 1037
BmgBI CACGTC 1 cut(s) 982
BmgT120I GGNCC 5 cut(s) 324, 518, 630, 949, 1201
BmiI GGNNCC 5 cut(s) 399, 513, 950, 951, 1438
BmrFI CCNGG 6 cut(s) 199, 516, 585, 593, 1433, 1442
BmsI GCATC 5 cut(s) 535, 740, 880, 1071, 1306
BpiI GAAGAC 2 cut(s) 564, 984
BplI GAGNNNNNCTC 2 cut(s) 889, 921
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 4 cut(s) 392, 642, 762, 1071
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 1 cut(s) 199
BsaJI CCNNGG 4 cut(s) 1204, 1357, 1432, 1440
BsaXI ACNNNNNCTCC 2 cut(s) 1086, 1116
Bsc4I CCNNNNNNNGG 7 cut(s) 121, 156, 218, 408, 409, 527, 1282
Bse1I ACTGG 2 cut(s) 1353, 1501
BseBI CCWGG 5 cut(s) 516, 585, 593, 1433, 1442
BseDI CCNNGG 4 cut(s) 1204, 1357, 1432, 1440
BseGI GGATG 4 cut(s) 483, 895, 1069, 1284
BseLI CCNNNNNNNGG 7 cut(s) 121, 156, 218, 408, 409, 527, 1282
BseMII CTCAG 6 cut(s) 107, 285, 383, 699, 1152, 1208
BseNI ACTGG 2 cut(s) 1353, 1501
BseXI GCAGC 1 cut(s) 478
BshFI GGCC 4 cut(s) 631, 832, 1223, 1466
BsiHKAI GWGCWC 3 cut(s) 438, 1038, 1179
BsiHKCI CYCGRG 1 cut(s) 1037
BsiSI CCGG 3 cut(s) 198, 926, 1276
BslFI GGGAC 5 cut(s) 121, 138, 740, 834, 935
BslI CCNNNNNNNGG 7 cut(s) 121, 156, 218, 408, 409, 527, 1282
BsmAI GTCTC 3 cut(s) 359, 909, 1178
BsmFI GGGAC 5 cut(s) 121, 138, 740, 834, 935
BsnI GGCC 4 cut(s) 631, 832, 1223, 1466
BsoBI CYCGRG 1 cut(s) 1037
Bsp1286I GDGCHC 3 cut(s) 438, 1038, 1179
Bsp143I GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
BspACI CCGC 4 cut(s) 139, 157, 409, 1283
BspANI GGCC 4 cut(s) 631, 832, 1223, 1466
BspCNI CTCAG 6 cut(s) 108, 286, 384, 700, 1153, 1207
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 5 cut(s) 399, 513, 950, 951, 1438
BspMAI CTGCAG 1 cut(s) 1402
BspMI ACCTGC 2 cut(s) 539, 1118
BspPI GGATC 7 cut(s) 25, 506, 519, 575, 1398, 1431, 1444
BspTI CTTAAG 1 cut(s) 1385
BsrBI CCGCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 1353, 1501
BssECI CCNNGG 4 cut(s) 1204, 1357, 1432, 1440
BssMI GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
BssSI CACGAG 3 cut(s) 75, 131, 1178
BssT1I CCWWGG 2 cut(s) 1204, 1357
Bst2BI CACGAG 3 cut(s) 75, 131, 1178
Bst2UI CCWGG 5 cut(s) 516, 585, 593, 1433, 1442
Bst4CI ACNGT 4 cut(s) 145, 267, 825, 1481
Bst6I CTCTTC 1 cut(s) 1257
BstAFI CTTAAG 1 cut(s) 1385
BstC8I GCNNGC 4 cut(s) 434, 1046, 1230, 1468
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 4 cut(s) 483, 895, 1069, 1284
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 7 cut(s) 20, 459, 514, 583, 1393, 1439, 1492
BstMAI GTCTC 3 cut(s) 359, 909, 1178
BstMBI GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
BstMWI GCNNNNNNNGC 1 cut(s) 1229
BstNI CCWGG 5 cut(s) 516, 585, 593, 1433, 1442
BstSCI CCNGG 6 cut(s) 197, 514, 583, 591, 1431, 1440
BstSFI CTRYAG 1 cut(s) 1398
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 2 cut(s) 564, 984
BstX2I RGATCY 3 cut(s) 17, 511, 1436
BstYI RGATCY 3 cut(s) 17, 511, 1436
BsuRI GGCC 4 cut(s) 631, 832, 1223, 1466
BtrI CACGTC 1 cut(s) 982
BtsCI GGATG 4 cut(s) 483, 895, 1069, 1284
BtsIMutI CAGTG 2 cut(s) 141, 1508
BveI ACCTGC 2 cut(s) 539, 1118
Cac8I GCNNGC 4 cut(s) 434, 1046, 1230, 1468
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 882
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 5 cut(s) 324, 518, 630, 949, 1201
CseI GACGC 2 cut(s) 574, 737
DpnI GATC 7 cut(s) 19, 458, 513, 582, 1392, 1438, 1491
DpnII GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
DraI TTTAAA 2 cut(s) 541, 1312
DrdI GACNNNNNNGTC 1 cut(s) 172
DseDI GACNNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 1221
Eam1104I CTCTTC 1 cut(s) 1257
EarI CTCTTC 1 cut(s) 1257
EciI GGCGGA 1 cut(s) 1298
Ecl136II GAGCTC 3 cut(s) 436, 1036, 1177
Eco130I CCWWGG 2 cut(s) 1204, 1357
Eco24I GRGCYC 3 cut(s) 438, 1038, 1179
Eco47I GGWCC 4 cut(s) 324, 518, 949, 1201
Eco53kI GAGCTC 3 cut(s) 436, 1036, 1177
Eco57I CTGAAG 2 cut(s) 1271, 1445
Eco88I CYCGRG 1 cut(s) 1037
EcoICRI GAGCTC 3 cut(s) 436, 1036, 1177
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 2 cut(s) 518, 949
EcoRII CCWGG 5 cut(s) 514, 583, 591, 1431, 1440
EcoT14I CCWWGG 2 cut(s) 1204, 1357
EcoT38I GRGCYC 3 cut(s) 438, 1038, 1179
ErhI CCWWGG 2 cut(s) 1204, 1357
FalI AAGNNNNNCTT 2 cut(s) 1037, 1069
FaqI GGGAC 5 cut(s) 121, 138, 740, 834, 935
FauI CCCGC 3 cut(s) 146, 150, 402
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 4 cut(s) 490, 902, 1076, 1291
FriOI GRGCYC 3 cut(s) 438, 1038, 1179
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 6 cut(s) 260, 369, 669, 741, 1188, 1272
GlaI GCGC 1 cut(s) 676
GluI GCNGC 1 cut(s) 492
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 4 cut(s) 631, 832, 1223, 1466
HapII CCGG 3 cut(s) 198, 926, 1276
HgaI GACGC 2 cut(s) 574, 737
HhaI GCGC 1 cut(s) 677
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 1046
HpaII CCGG 3 cut(s) 198, 926, 1276
HphI GGTGA 4 cut(s) 100, 424, 824, 1097
Hpy166II GTNNAC 5 cut(s) 91, 177, 327, 342, 1105
Hpy188I TCNGA 5 cut(s) 151, 784, 897, 1094, 1162
Hpy8I GTNNAC 5 cut(s) 91, 177, 327, 342, 1105
Hpy99I CGWCG 3 cut(s) 155, 178, 443
HpyAV CCTTC 7 cut(s) 690, 777, 857, 869, 1018, 1093, 1246
HpyCH4III ACNGT 4 cut(s) 145, 267, 825, 1481
HpyCH4IV ACGT 2 cut(s) 441, 981
HpyCH4V TGCA 2 cut(s) 548, 1400
HpyF10VI GCNNNNNNNGC 1 cut(s) 1229
HpySE526I ACGT 2 cut(s) 441, 981
HspAI GCGC 1 cut(s) 675
KflI GGGWCCC 1 cut(s) 949
Kzo9I GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
LmnI GCTCC 2 cut(s) 451, 1067
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 5 cut(s) 535, 740, 880, 1071, 1306
MaeI CTAG 6 cut(s) 260, 369, 669, 741, 1188, 1272
MaeII ACGT 2 cut(s) 441, 981
MalI GATC 7 cut(s) 19, 458, 513, 582, 1392, 1438, 1491
MbiI CCGCTC 1 cut(s) 157
MboI GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
MboII GAAGA 8 cut(s) 33, 569, 814, 817, 859, 989, 1222, 1274
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 3 cut(s) 17, 511, 1436
MhlI GDGCHC 3 cut(s) 438, 1038, 1179
MlsI TGGCCA 1 cut(s) 1223
MluCI AATT 5 cut(s) 466, 525, 1019, 1113, 1531
MluNI TGGCCA 1 cut(s) 1223
MlyI GAGTC 5 cut(s) 143, 242, 719, 911, 1186
MmeI TCCRAC 5 cut(s) 47, 174, 1041, 1072, 1179
Mox20I TGGCCA 1 cut(s) 1223
MscI TGGCCA 1 cut(s) 1223
MseI TTAA 7 cut(s) 300, 540, 635, 1311, 1365, 1386, 1404
Msp20I TGGCCA 1 cut(s) 1223
MspA1I CMGCKG 2 cut(s) 409, 491
MspCI CTTAAG 1 cut(s) 1385
MspI CCGG 3 cut(s) 198, 926, 1276
MspR9I CCNGG 6 cut(s) 199, 516, 585, 593, 1433, 1442
MunI CAATTG 1 cut(s) 466
MvaI CCWGG 5 cut(s) 516, 585, 593, 1433, 1442
MwoI GCNNNNNNNGC 1 cut(s) 1229
NciI CCSGG 1 cut(s) 199
NdeII GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
NlaIV GGNNCC 5 cut(s) 399, 513, 950, 951, 1438
PaeR7I CTCGAG 1 cut(s) 1037
PagI TCATGA 1 cut(s) 882
PaqCI CACCTGC 1 cut(s) 539
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PfeI GAWTC 6 cut(s) 415, 601, 920, 998, 1135, 1148
PflFI GACNNNGTC 2 cut(s) 983, 1373
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 5 cut(s) 142, 241, 718, 910, 1186
PpsI GAGTC 5 cut(s) 142, 241, 718, 910, 1186
PpuMI RGGWCCY 2 cut(s) 518, 949
PsiI TTATAA 1 cut(s) 1530
Psp124BI GAGCTC 3 cut(s) 438, 1038, 1179
Psp5II RGGWCCY 2 cut(s) 518, 949
Psp6I CCWGG 5 cut(s) 514, 583, 591, 1431, 1440
PspGI CCWGG 5 cut(s) 514, 583, 591, 1431, 1440
PspN4I GGNNCC 5 cut(s) 399, 513, 950, 951, 1438
PspPI GGNCC 5 cut(s) 324, 518, 630, 949, 1201
PspPPI RGGWCCY 2 cut(s) 518, 949
PspXI VCTCGAGB 1 cut(s) 1037
PstI CTGCAG 1 cut(s) 1402
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 3 cut(s) 17, 511, 1436
PsyI GACNNNGTC 2 cut(s) 983, 1373
PvuII CAGCTG 1 cut(s) 491
SacI GAGCTC 3 cut(s) 438, 1038, 1179
SalI GTCGAC 1 cut(s) 175
SaqAI TTAA 7 cut(s) 300, 540, 635, 1311, 1365, 1386, 1404
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 7 cut(s) 17, 456, 511, 580, 1390, 1436, 1489
Sau96I GGNCC 5 cut(s) 324, 518, 630, 949, 1201
SchI GAGTC 5 cut(s) 143, 242, 719, 911, 1186
ScrFI CCNGG 6 cut(s) 199, 516, 585, 593, 1433, 1442
SduI GDGCHC 3 cut(s) 438, 1038, 1179
SfaNI GCATC 5 cut(s) 535, 740, 880, 1071, 1306
SfcI CTRYAG 1 cut(s) 1398
Sfr274I CTCGAG 1 cut(s) 1037
SinI GGWCC 4 cut(s) 324, 518, 949, 1201
SlaI CTCGAG 1 cut(s) 1037
SmlI CTYRAG 3 cut(s) 1037, 1085, 1385
SmoI CTYRAG 3 cut(s) 1037, 1085, 1385
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 5 cut(s) 466, 525, 1019, 1113, 1531
SsiI CCGC 4 cut(s) 139, 157, 409, 1283
SspMI CTAG 6 cut(s) 260, 369, 669, 741, 1188, 1272
SstI GAGCTC 3 cut(s) 438, 1038, 1179
StyD4I CCNGG 6 cut(s) 197, 514, 583, 591, 1431, 1440
StyI CCWWGG 2 cut(s) 1204, 1357
TaaI ACNGT 4 cut(s) 145, 267, 825, 1481
TaiI ACGT 2 cut(s) 444, 984
TaqI TCGA 6 cut(s) 176, 363, 438, 907, 987, 1038
TasI AATT 5 cut(s) 466, 525, 1019, 1113, 1531
TfiI GAWTC 6 cut(s) 415, 601, 920, 998, 1135, 1148
Tru1I TTAA 7 cut(s) 300, 540, 635, 1311, 1365, 1386, 1404
Tru9I TTAA 7 cut(s) 300, 540, 635, 1311, 1365, 1386, 1404
TscAI CASTG 2 cut(s) 148, 1508
TseI GCWGC 1 cut(s) 491
TspDTI ATGAA 5 cut(s) 73, 206, 871, 1000, 1530
TspRI CASTG 2 cut(s) 148, 1508
Tth111I GACNNNGTC 2 cut(s) 983, 1373
Vha464I CTTAAG 1 cut(s) 1385
VpaK11BI GGWCC 4 cut(s) 324, 518, 949, 1201
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XhoI CTCGAG 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 6 cut(s) 260, 369, 669, 741, 1188, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.