Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

13269231 .. 13270301

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCAAACAGAGGCTAGGAAACGGCTGTTGGCGTATAGGGCTGCTCGTTCTCCATGGACAGCTGACCAGGAGATGACCGAGACTAGTGTTGACGCTCTAAGAGAACTGAGGTGGAACTATCAAATACCTGACTCCGTAGAGCTAAGATTGATTAAGGATGGTGAGCTGCCTAGTAGTCCTCCGGATGGGTTTATTACTCTATACCCAGCCATGCTAGAATTAGGTATTAGGATACCATTCCAGCCCTTCGTGCATGGTTGGGTGAGTGAGCTTGGCATTGCTCCAGCTCAAATTAATCCTAATGGCTATAGAGTGATTATTGCTTTGATAGCTTTGTGGAATGATAAATTCAGTTGTGACCCACCAGTTGAAGTTCTTCGTTACCATTTGCGGCTTAAGAAGAACATATCAGTGACCAAGGATCCTATTGAGGGTTTTTATTGTATCGTCCCCCAACGTCCTGCCATTATACTTGAGCTTCCATCCGCGGTTAGAACTTGGAGGAATAAGTGGTTTTATGTTAAGGGTTGGGCGTTCACTTCTAGTGGTGGAGTTCCAGCCCCCAACATTGTTACCCATTTTAAGGATGCAGGGAAGTGGCGAAAATTGAATTCTCTCTCTAGAGTTGTAAAGGAGAGATTCGGAACTTTGCTTGATCTTCCGAGGGAGGAGCGACTTTTCAAGACGATTGTCATAGAAGAGAAATTGGCGAGGCTTGGGATAGCAGCTCCAGCCAGAAACATGACACTTGACAAGAATGATCCTGGACTTCGTGCAAGGATTCTCCAGCAACGTCAAGCCATAAAGAGGCCAATTGTGCCCAGACCCTTGGTCCCTCCTAATGAAGACAAGTCTTCACCTAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006726 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016684 GO:0019221 GO:0019725 GO:0023052 GO:0033209 GO:0034097 GO:0034612 GO:0042221 GO:0042440 GO:0042441 GO:0042592 GO:0043324 GO:0043473 GO:0043474 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046148 GO:0047134 GO:0048066 GO:0048069 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF953

Protein Analysis

289

Amino Acids

33.0

Weight (kDa)

9.9

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	488
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	3 cut(s)	391, 486, 488
AclWI	GGATC	3 cut(s)	416, 429, 755
AcsI	RAATTY	2 cut(s)	347, 610
AfiI	CCNNNNNNNGG	4 cut(s)	185, 431, 583, 807
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	371, 610, 682
AhdI	GACNNNNNGTC	1 cut(s)	830
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	66, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	8 cut(s)	62, 142, 166, 271, 287, 332, 478, 728
AluI	AGCT	8 cut(s)	62, 142, 166, 271, 287, 332, 478, 728
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	3 cut(s)	416, 429, 755
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	809
ApeKI	GCWGC	3 cut(s)	41, 166, 725
ApoI	RAATTY	2 cut(s)	347, 610
AseI	ATTAAT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	3 cut(s)	173, 274, 849
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	822
BamHI	GGATCC	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	846, 852
BbvI	GCAGC	3 cut(s)	28, 153, 737
BccI	CCATC	3 cut(s)	152, 179, 490
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	68, 765
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	6 cut(s)	15, 84, 171, 215, 543, 621
BfmI	CTRYAG	1 cut(s)	307
BfrI	CTTAAG	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	4 cut(s)	42, 167, 392, 726
BlsI	GCNGC	4 cut(s)	43, 168, 393, 727
Bme1390I	CCNGG	2 cut(s)	68, 765
Bme18I	GGWCC	1 cut(s)	832
BmeRI	GACNNNNNGTC	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	2 cut(s)	423, 834
BmrFI	CCNGG	2 cut(s)	68, 765
BmsI	GCATC	1 cut(s)	577
BoxI	GACNNNNGTC	1 cut(s)	689
BpiI	GAAGAC	2 cut(s)	846, 852
BpmI	CTGGAG	3 cut(s)	267, 714, 770
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	494
BsaJI	CCNNGG	5 cut(s)	53, 417, 486, 662, 828
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 431, 583, 807
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	276
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	68, 765
BseDI	CCNNGG	5 cut(s)	53, 417, 486, 662, 828
BseGI	GGATG	4 cut(s)	163, 190, 482, 592
BseLI	CCNNNNNNNGG	4 cut(s)	185, 431, 583, 807
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	822
BseXI	GCAGC	3 cut(s)	28, 153, 737
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	1 cut(s)	811
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	2 cut(s)	434, 818
BslI	CCNNNNNNNGG	4 cut(s)	185, 431, 583, 807
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	434, 818
BsnI	GGCC	1 cut(s)	811
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	421, 655, 760
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	3 cut(s)	391, 486, 488
BspANI	GGCC	1 cut(s)	811
BspCNI	CTCAG	1 cut(s)	99
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	2 cut(s)	423, 834
BspPI	GGATC	3 cut(s)	416, 429, 755
BspTI	CTTAAG	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	5 cut(s)	53, 417, 486, 662, 828
BssMI	GATC	3 cut(s)	421, 655, 760
BssT1I	CCWWGG	3 cut(s)	53, 417, 828
Bst2UI	CCWGG	2 cut(s)	68, 765
Bst6I	CTCTTC	1 cut(s)	693
BstAFI	CTTAAG	1 cut(s)	395
BstDEI	CTNAG	4 cut(s)	98, 107, 143, 861
BstDSI	CCRYGG	2 cut(s)	53, 486
BstF5I	GGATG	4 cut(s)	163, 190, 482, 592
BstFNI	CGCG	1 cut(s)	488
BstKTI	GATC	3 cut(s)	424, 658, 763
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	421, 655, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 250, 329, 731, 817
BstNI	CCWGG	2 cut(s)	68, 765
BstPAI	GACNNNNGTC	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	66, 763
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	822
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	3 cut(s)	28, 153, 737
BstV2I	GAAGAC	2 cut(s)	846, 852
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	811
BtgI	CCRYGG	2 cut(s)	53, 486
BtsCI	GGATG	4 cut(s)	163, 190, 482, 592
BtsIMutI	CAGTG	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	832
Cfr42I	CCGCGG	1 cut(s)	489
CseI	GACGC	1 cut(s)	101
CviAII	CATG	4 cut(s)	54, 211, 254, 742
DdeI	CTNAG	4 cut(s)	98, 107, 143, 861
DpnI	GATC	3 cut(s)	423, 657, 762
DpnII	GATC	3 cut(s)	421, 655, 760
DriI	GACNNNNNGTC	1 cut(s)	830
Eam1104I	CTCTTC	1 cut(s)	693
Eam1105I	GACNNNNNGTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	693
Eco130I	CCWWGG	3 cut(s)	53, 417, 828
Eco47I	GGWCC	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	66, 763
EcoT14I	CCWWGG	3 cut(s)	53, 417, 828
ErhI	CCWWGG	3 cut(s)	53, 417, 828
FaeI	CATG	4 cut(s)	57, 214, 257, 745
FaqI	GGGAC	2 cut(s)	434, 818
FatI	CATG	4 cut(s)	53, 210, 253, 741
Fnu4HI	GCNGC	4 cut(s)	42, 167, 392, 726
FokI	GGATG	4 cut(s)	170, 197, 469, 599
Fsp4HI	GCNGC	4 cut(s)	42, 167, 392, 726
FspBI	CTAG	6 cut(s)	15, 84, 171, 215, 543, 621
GluI	GCNGC	4 cut(s)	42, 167, 392, 726
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	3 cut(s)	267, 714, 770
HaeIII	GGCC	1 cut(s)	811
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	4 cut(s)	57, 214, 257, 745
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	131, 639, 781
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	173, 274, 849
Hpy166II	GTNNAC	2 cut(s)	91, 537
Hpy188I	TCNGA	2 cut(s)	644, 663
Hpy188III	TCNNGA	3 cut(s)	182, 621, 682
Hpy8I	GTNNAC	2 cut(s)	91, 537
HpyAV	CCTTC	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	457, 793
HpyCH4V	TGCA	4 cut(s)	4, 253, 590, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 250, 329, 731, 817
HpyF3I	CTNAG	4 cut(s)	98, 107, 143, 861
HpySE526I	ACGT	2 cut(s)	457, 793
Hsp92II	CATG	4 cut(s)	57, 214, 257, 745
Kpn2I	TCCGGA	1 cut(s)	181
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	421, 655, 760
LmnI	GCTCC	3 cut(s)	286, 670, 733
Lsp1109I	GCAGC	3 cut(s)	28, 153, 737
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	6 cut(s)	15, 84, 171, 215, 543, 621
MaeII	ACGT	2 cut(s)	457, 793
MaeIII	GTNAC	4 cut(s)	356, 380, 412, 571
MalI	GATC	3 cut(s)	423, 657, 762
MboI	GATC	3 cut(s)	421, 655, 760
MboII	GAAGA	6 cut(s)	368, 412, 650, 710, 846, 857
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	822
MluCI	AATT	7 cut(s)	218, 291, 347, 605, 610, 704, 813
MlyI	GAGTC	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	5 cut(s)	153, 294, 396, 522, 582
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	62, 488
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	68, 765
MunI	CAATTG	1 cut(s)	813
MvaI	CCWGG	2 cut(s)	68, 765
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	5 cut(s)	38, 250, 329, 731, 817
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	421, 655, 760
NlaIII	CATG	4 cut(s)	57, 214, 257, 745
NlaIV	GGNNCC	2 cut(s)	423, 834
NmuCI	GTSAC	2 cut(s)	356, 412
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	639, 781
PfoI	TCCNGGA	1 cut(s)	763
PkrI	GCNGC	4 cut(s)	43, 168, 393, 727
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PshAI	GACNNNNGTC	1 cut(s)	689
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	66, 763
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	66, 763
PspN4I	GGNNCC	2 cut(s)	423, 834
PspPI	GGNCC	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	410
SacII	CCGCGG	1 cut(s)	489
SaqAI	TTAA	5 cut(s)	153, 294, 396, 522, 582
SatI	GCNGC	4 cut(s)	42, 167, 392, 726
Sau3AI	GATC	3 cut(s)	421, 655, 760
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	68, 765
SduI	GDGCHC	1 cut(s)	822
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	307
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	395, 473
SmoI	CTYRAG	2 cut(s)	395, 473
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	7 cut(s)	218, 291, 347, 605, 610, 704, 813
SsiI	CCGC	3 cut(s)	391, 486, 488
SspMI	CTAG	6 cut(s)	15, 84, 171, 215, 543, 621
StyD4I	CCNGG	2 cut(s)	66, 763
StyI	CCWWGG	3 cut(s)	53, 417, 828
TaiI	ACGT	2 cut(s)	460, 796
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	7 cut(s)	218, 291, 347, 605, 610, 704, 813
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	639, 781
Tru1I	TTAA	5 cut(s)	153, 294, 396, 522, 582
Tru9I	TTAA	5 cut(s)	153, 294, 396, 522, 582
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	2 cut(s)	356, 412
TseI	GCWGC	3 cut(s)	41, 166, 725
Tsp45I	GTSAC	2 cut(s)	356, 412
TspDTI	ATGAA	1 cut(s)	858
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	417
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	832
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	347, 610
XbaI	TCTAGA	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	6 cut(s)	15, 84, 171, 215, 543, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.