Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

28676551 .. 28677728

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGTGAGGAGGTGCAGGGTAAGCAAGACCCTTTAAAGAAGAAAATGAGGGTGGATGATGAGACCGACAATCTCATGGAAGATGCCAAGAGGGAAACTTGGCAGTCCAAGGCTAGGGACATGATGGGGCTTGTTGATACTAAGGCTTATACCGCAAATTTTGGGACAAGTGAACTCGAGGGAGAACTTGATTTCCTTGTGGAAGGGGCTAAGAGTTCTTTGATTTTGGCCAATTTGAAGAATCATCTCATAATTGACAAGATGGCAGAGAGGATTCGTGAGTTGGACTCCCAGGTGCTTGCAATCAACAAGGAGCTCAGGGCGACCAAGACTCAGCTAGGTCAAAAGAAGAAAGATGTGGCAAAAATGGAGGATTATCACAAAAAGCTTAAGGAAAAAGAAATAGAGGTTGACCAATTGGGAGAAAAGGTTAAGGGCCTGGAGAAGGAACTCAAGGTTAAGGCCAAAGAGTGTATGAAAAACAAGAACTTAGAGGTGGAAGTCCAAGGCCTCAGAGAGAGGGTTGAGGGTCTTAGGAGCAAGGCCAAGGTTGGTCGTAACAGTATATTGAGGGAGTTCCAGGATTCTAAAGAGTACAAGGACATCTTAGAGAATAGCTACTCAGAGGGGTATACTGACTTACTCAACCTATATGTAGAGCATTTTGGTGAGAAGGGTATGGAATGGGCAGTTTCTTTGGGCATTGATGCTGAGCCTTCGGAAAACAAGGGTAGCCCTTCCAAGGTTACACCTGTTAATACAAGTCCAAGTATTACCCTATCTGGCCATGAAGTTGAGGGATTGGAGAGTGGAGGAATCGACCAGGCAAGCGGGTCAGTACTGGGAGATGAACCTACTGAGGCACTAAGCGACGACCACCAGCAAGGTAAGTCTGGCACTGGTGACATTCCAGCTGAGGACAAAGGAGGTGCTCTTGGAGATAGGGAAGATGGATATGAAATGGCTAAGGTGACAAATGCTGACCCTGGAAGTGTCAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

36.93

Weight (kDa)

5.01

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	632
AciI	CCGC	2 cut(s)	153, 831
AcoI	YGGCCR	2 cut(s)	228, 784
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	2 cut(s)	596, 840
AfiI	CCNNNNNNNGG	3 cut(s)	114, 445, 742
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	5 cut(s)	291, 438, 579, 822, 985
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	5 cut(s)	316, 337, 388, 618, 914
AluI	AGCT	5 cut(s)	316, 337, 388, 618, 914
Alw21I	GWGCWC	2 cut(s)	318, 934
Alw26I	GTCTC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	6 cut(s)	228, 436, 462, 508, 543, 784
ApoI	RAATTY	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	680, 914, 982
AvaI	CYCGRG	1 cut(s)	176
BalI	TGGCCA	2 cut(s)	230, 786
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	2 cut(s)	318, 934
BbvCI	CCTCAGC	1 cut(s)	915
BccI	CCATC	3 cut(s)	118, 256, 944
BciT130I	CCWGG	5 cut(s)	293, 440, 581, 824, 987
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	114, 338
BfrI	CTTAAG	1 cut(s)	389
BlpI	GCTNAGC	1 cut(s)	711
BmcAI	AGTACT	1 cut(s)	840
Bme1390I	CCNGG	5 cut(s)	293, 440, 581, 824, 987
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	436
BmrFI	CCNGG	5 cut(s)	293, 440, 581, 824, 987
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	2 cut(s)	73, 697
BmuI	ACTGGG	1 cut(s)	851
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	1 cut(s)	461
Bpu10I	CCTNAGC	3 cut(s)	317, 915, 966
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	6 cut(s)	108, 291, 505, 546, 741, 985
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 445, 742
Bse1I	ACTGG	2 cut(s)	846, 904
BseBI	CCWGG	5 cut(s)	293, 440, 581, 824, 987
BseDI	CCNNGG	6 cut(s)	108, 291, 505, 546, 741, 985
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	114, 445, 742
BseMII	CTCAG	7 cut(s)	331, 347, 526, 636, 702, 849, 906
BseNI	ACTGG	2 cut(s)	846, 904
BseRI	GAGGAG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	6 cut(s)	230, 438, 464, 510, 545, 786
BsiHKAI	GWGCWC	2 cut(s)	318, 934
BsiHKCI	CYCGRG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	131, 178
BslI	CCNNNNNNNGG	3 cut(s)	114, 445, 742
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	131, 178
BsnI	GGCC	6 cut(s)	230, 438, 464, 510, 545, 786
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	318, 934
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	2 cut(s)	153, 831
BspANI	GGCC	6 cut(s)	230, 438, 464, 510, 545, 786
BspCNI	CTCAG	7 cut(s)	330, 346, 525, 635, 703, 850, 907
BspTI	CTTAAG	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	846, 904
BssECI	CCNNGG	6 cut(s)	108, 291, 505, 546, 741, 985
BssNAI	GTATAC	1 cut(s)	633
BssT1I	CCWWGG	4 cut(s)	108, 505, 546, 741
Bst1107I	GTATAC	1 cut(s)	633
Bst2UI	CCWGG	5 cut(s)	293, 440, 581, 824, 987
Bst4CI	ACNGT	1 cut(s)	563
BstAFI	CTTAAG	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	300, 829
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 152
BstNI	CCWGG	5 cut(s)	293, 440, 581, 824, 987
BstSCI	CCNGG	5 cut(s)	291, 438, 579, 822, 985
BstZ17I	GTATAC	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	230, 438, 464, 510, 545, 786
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	897
Cac8I	GCNNGC	2 cut(s)	300, 829
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	595, 839
CviAII	CATG	3 cut(s)	76, 121, 788
CviQI	GTAC	2 cut(s)	595, 839
DraI	TTTAAA	1 cut(s)	36
EaeI	YGGCCR	2 cut(s)	228, 784
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	4 cut(s)	108, 505, 546, 741
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	5 cut(s)	291, 438, 579, 822, 985
EcoT14I	CCWWGG	4 cut(s)	108, 505, 546, 741
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	4 cut(s)	108, 505, 546, 741
FaeI	CATG	3 cut(s)	79, 124, 791
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	2 cut(s)	131, 178
FatI	CATG	3 cut(s)	75, 120, 787
FauI	CCCGC	1 cut(s)	824
FblI	GTMKAC	1 cut(s)	632
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	318
FspBI	CTAG	2 cut(s)	114, 338
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	6 cut(s)	230, 438, 464, 510, 545, 786
Hin1II	CATG	3 cut(s)	79, 124, 791
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	6 cut(s)	241, 274, 287, 331, 584, 816
HphI	GGTGA	3 cut(s)	680, 914, 982
Hpy166II	GTNNAC	3 cut(s)	173, 412, 633
Hpy188I	TCNGA	3 cut(s)	515, 625, 721
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	3 cut(s)	173, 412, 633
Hpy99I	CGWCG	1 cut(s)	875
HpyAV	CCTTC	5 cut(s)	197, 439, 667, 726, 747
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4V	TGCA	2 cut(s)	16, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 152
Hsp92II	CATG	3 cut(s)	79, 124, 791
LmnI	GCTCC	2 cut(s)	313, 537
LweI	GCATC	2 cut(s)	73, 697
MaeI	CTAG	2 cut(s)	114, 338
MaeIII	GTNAC	4 cut(s)	557, 745, 902, 970
MboII	GAAGA	5 cut(s)	52, 92, 250, 361, 959
MfeI	CAATTG	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	318, 934
MlsI	TGGCCA	2 cut(s)	230, 786
MluCI	AATT	4 cut(s)	157, 232, 252, 416
MluNI	TGGCCA	2 cut(s)	230, 786
MlyI	GAGTC	2 cut(s)	281, 325
MmeI	TCCRAC	1 cut(s)	264
Mox20I	TGGCCA	2 cut(s)	230, 786
MscI	TGGCCA	2 cut(s)	230, 786
MseI	TTAA	5 cut(s)	35, 390, 432, 459, 756
MslI	CAYNNNNRTG	1 cut(s)	666
Msp20I	TGGCCA	2 cut(s)	230, 786
MspA1I	CMGCKG	1 cut(s)	914
MspCI	CTTAAG	1 cut(s)	389
MspR9I	CCNGG	5 cut(s)	293, 440, 581, 824, 987
MunI	CAATTG	1 cut(s)	416
MvaI	CCWGG	5 cut(s)	293, 440, 581, 824, 987
MwoI	GCNNNNNNNGC	2 cut(s)	22, 152
NlaIII	CATG	3 cut(s)	79, 124, 791
NmuCI	GTSAC	2 cut(s)	902, 970
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	510
PfeI	GAWTC	4 cut(s)	241, 274, 584, 816
PfoI	TCCNGGA	1 cut(s)	579
PleI	GAGTC	2 cut(s)	281, 325
PpsI	GAGTC	2 cut(s)	281, 325
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	5 cut(s)	291, 438, 579, 822, 985
PspGI	CCWGG	5 cut(s)	291, 438, 579, 822, 985
PspPI	GGNCC	1 cut(s)	436
PspXI	VCTCGAGB	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	2 cut(s)	596, 840
RsaNI	GTAC	2 cut(s)	595, 839
RseI	CAYNNNNRTG	1 cut(s)	666
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	5 cut(s)	35, 390, 432, 459, 756
Sau96I	GGNCC	1 cut(s)	436
ScaI	AGTACT	1 cut(s)	840
SchI	GAGTC	2 cut(s)	281, 325
ScrFI	CCNGG	5 cut(s)	293, 440, 581, 824, 987
SduI	GDGCHC	2 cut(s)	318, 934
SfaNI	GCATC	2 cut(s)	73, 697
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	3 cut(s)	176, 389, 452
SmoI	CTYRAG	3 cut(s)	176, 389, 452
Sse9I	AATT	4 cut(s)	157, 232, 252, 416
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	2 cut(s)	153, 831
SspMI	CTAG	2 cut(s)	114, 338
SstI	GAGCTC	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	5 cut(s)	291, 438, 579, 822, 985
StyI	CCWWGG	4 cut(s)	108, 505, 546, 741
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	2 cut(s)	177, 819
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	4 cut(s)	157, 232, 252, 416
TatI	WGTACW	2 cut(s)	594, 838
TfiI	GAWTC	4 cut(s)	241, 274, 584, 816
Tru1I	TTAA	5 cut(s)	35, 390, 432, 459, 756
Tru9I	TTAA	5 cut(s)	35, 390, 432, 459, 756
TscAI	CASTG	1 cut(s)	904
TseFI	GTSAC	2 cut(s)	902, 970
Tsp45I	GTSAC	2 cut(s)	902, 970
TspDTI	ATGAA	4 cut(s)	491, 804, 864, 972
TspRI	CASTG	1 cut(s)	904
Vha464I	CTTAAG	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	632
XspI	CTAG	2 cut(s)	114, 338
ZrmI	AGTACT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.