Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

50400056 .. 50400481

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTGAGGAGGCGCAGGGTAAGCAAGACCCTTTGAAGAAGAAACTGAGGGTGGATGATGAGGTCGACAATCTTGTGGAAGATGCCAAGAGGGAGACTCGGCAGTCCAAGGCTAGGCAGCAAGTTGACACTCCGGGTGCGCGCCACCGCCAAGTTGACGTTCCAGAATTTCTTTCTGATTACGTTGGGGACATGATGGGGCTTATTGACACTAAGACTTATACCGCAAACTTTGGGACGGGTGAACTTGAGGGGGAACTTGATTCTCTTGTGGAAGGGGCAAAAAGTTCTTTGATTTTGGTACCGATGATGATGATTATTATTTTTTCGTGTGCTGATATGTCAGGGTTTACATCTATTGTACGTATGACTCTTTTTTGTTTCTTTCTTTTTGCAGGCCAATTTGAAGAATCATCTCATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.81

Weight (kDa)

4.65

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	142
AciI	CCGC	2 cut(s)	148, 225
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	2 cut(s)	303, 363
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	37, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	301
AspLEI	GCGC	3 cut(s)	16, 142, 144
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	38
BsePI	GCGCGC	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	399
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	2 cut(s)	203, 250
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	203, 250
BsnI	GGCC	1 cut(s)	399
BspACI	CCGC	2 cut(s)	148, 225
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	108
BssHII	GCGCGC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	142, 397
BstDEI	CTNAG	2 cut(s)	47, 213
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	3 cut(s)	16, 142, 144
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	133
BstSNI	TACGTA	1 cut(s)	365
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	142, 397
CfoI	GCGC	3 cut(s)	16, 142, 144
Csp6I	GTAC	2 cut(s)	302, 362
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	3 cut(s)	113, 202, 399
CviKI_1	RGCY	3 cut(s)	113, 202, 399
CviQI	GTAC	2 cut(s)	302, 362
DdeI	CTNAG	2 cut(s)	47, 213
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eco105I	TACGTA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	196
FaiI	YATR	5 cut(s)	194, 222, 341, 368, 420
FaqI	GGGAC	2 cut(s)	203, 250
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	3 cut(s)	15, 141, 143
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	3 cut(s)	16, 142, 144
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	3 cut(s)	14, 140, 142
HinP1I	GCGC	3 cut(s)	14, 140, 142
HincII	GTYRAC	3 cut(s)	67, 127, 157
HindII	GTYRAC	3 cut(s)	67, 127, 157
HinfI	GANTC	4 cut(s)	97, 263, 370, 410
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	5 cut(s)	67, 127, 157, 245, 351
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	5 cut(s)	67, 127, 157, 245, 351
HpyAV	CCTTC	1 cut(s)	269
HpyCH4IV	ACGT	3 cut(s)	159, 183, 364
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	47, 213
HpySE526I	ACGT	3 cut(s)	159, 183, 364
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	3 cut(s)	14, 140, 142
KpnI	GGTACC	1 cut(s)	305
LpnPI	CCDG	5 cut(s)	2, 147, 177, 330, 381
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	3 cut(s)	159, 183, 364
MboII	GAAGA	4 cut(s)	49, 52, 92, 419
MluCI	AATT	3 cut(s)	167, 401, 421
MlyI	GAGTC	2 cut(s)	91, 364
MnlI	CCTC	5 cut(s)	4, 42, 55, 84, 244
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	135
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	79
PauI	GCGCGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	263, 410
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	91, 364
PpsI	GAGTC	2 cut(s)	91, 364
Ppu21I	YACGTR	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	303
PteI	GCGCGC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	303, 363
RsaNI	GTAC	2 cut(s)	302, 362
SalI	GTCGAC	1 cut(s)	65
SatI	GCNGC	1 cut(s)	119
SchI	GAGTC	2 cut(s)	91, 364
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	4 cut(s)	66, 162, 186, 367
SfaNI	GCATC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	365
Sse9I	AATT	3 cut(s)	167, 401, 421
SsiI	CCGC	2 cut(s)	148, 225
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	3 cut(s)	162, 186, 367
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	167, 401, 421
TfiI	GAWTC	2 cut(s)	263, 410
TseI	GCWGC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.