Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

28677825 .. 28678801

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGACCGAGACTAGTGTTGACGCTCTAATAGAACTGAGGTGGAACTATCAAATACCTGACTCTGTAGAGCTAAGATTGATTGAGGATGATGAGCTGCCTAGTAGTCCTCCGGATGAGTTTGTCACTCTATACCCAGCCATGCTAGAATTAGGTATTAGGATACCGTTCCAGCCCTCCGTGCATGGTTGGGTGAGTGAGCTTTGCATTGCTCCAGCTCAAATTAGTCCTAATGGTTATAGAGTGATTATTGCTTTGATAGCATTGTGGAATGATAAATTCAATTGTGACCCACCAATTGAAGTTCTTCGTTACCATTTCTGGCTTAAGAAGAACATATCAGCGACCAAAGATCCTATTGAGGGTTTTTATTATATTGTCCCTCAACATCCTGCCGTTGTGCTTGAGCTTCCATCCGTGGCTAAAACTTGGAGGAATAAGTTGTTTTATGTTAAGGGCTGGGCGTCCACCTCTAGTGGTGGGGTTCCAGCCCCCAACATTGTTACCCATTTTAAGGATGCAGGGAAGTGGCGAAAACTGAATTCTCTCTCTAGAGTTGTGAAGGAGAGATTTGAAACTTTACTTGATCTTCTGAGGGAGGAGCAACGTTTCAAGACGATTGTCACAGAAGCGAAATTGGCGAGGCTTGAGATAGCAGCTTCAGCTAGCAATATGACACTTGACAAGAATGATCTTGGACTTTGTGCAAGGATTCTCCAGCAATGTCAAGCCATAAAGGGGCCAATTGTGCCCAGACCCTTGGTCCCTCCTAATGAAGACATGTCTTCACCTAGGCCCCCATGTCCCAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.57

Weight (kDa)

6.91

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	109
AclI	AACGTT	1 cut(s)	604
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	275, 538
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	461
AfiI	CCNNNNNNNGG	3 cut(s)	359, 511, 735
AflII	CTTAAG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	4 cut(s)	280, 299, 572, 610
AhdI	GACNNNNNGTC	1 cut(s)	758
AhlI	ACTAGT	1 cut(s)	11
AluBI	AGCT	7 cut(s)	70, 94, 199, 215, 406, 656, 662
AluI	AGCT	7 cut(s)	70, 94, 199, 215, 406, 656, 662
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	2 cut(s)	737, 791
ApeKI	GCWGC	2 cut(s)	94, 653
ApoI	RAATTY	2 cut(s)	275, 538
Asp700I	GAANNNNTTC	1 cut(s)	303
AspA2I	CCTAGG	1 cut(s)	788
AspS9I	GGNCC	3 cut(s)	737, 760, 792
AsuHPI	GGTGA	2 cut(s)	202, 777
AsuNHI	GCTAGC	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	760
AvrII	CCTAGG	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	750
BbsI	GAAGAC	2 cut(s)	774, 780
BbvI	GCAGC	2 cut(s)	81, 665
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	377
BciVI	GTATCC	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	2
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	7 cut(s)	12, 99, 143, 471, 549, 663, 789
BfmI	CTRYAG	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	153
BisI	GCNGC	2 cut(s)	95, 654
BlnI	CCTAGG	1 cut(s)	788
BlsI	GCNGC	2 cut(s)	96, 655
Bme18I	GGWCC	1 cut(s)	760
BmeRI	GACNNNNNGTC	1 cut(s)	758
BmgT120I	GGNCC	3 cut(s)	737, 760, 792
BmiI	GGNNCC	4 cut(s)	483, 738, 762, 794
BmsI	GCATC	1 cut(s)	505
BmtI	GCTAGC	1 cut(s)	666
BoxI	GACNNNNGTC	1 cut(s)	617
BpiI	GAAGAC	2 cut(s)	774, 780
BpmI	CTGGAG	2 cut(s)	195, 698
BpuEI	CTTGAG	2 cut(s)	422, 665
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	414, 756, 788
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 511, 735
Bse3DI	GCAATG	2 cut(s)	204, 725
BseAI	TCCGGA	1 cut(s)	109
BseDI	CCNNGG	3 cut(s)	414, 756, 788
BseGI	GGATG	5 cut(s)	91, 118, 385, 410, 520
BseLI	CCNNNNNNNGG	3 cut(s)	359, 511, 735
BseMI	GCAATG	2 cut(s)	204, 725
BseMII	CTCAG	2 cut(s)	26, 581
BseRI	GAGGAG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	2 cut(s)	81, 665
BseYI	CCCAGC	2 cut(s)	133, 456
BshFI	GGCC	2 cut(s)	739, 793
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	3 cut(s)	362, 746, 786
BslI	CCNNNNNNNGG	3 cut(s)	359, 511, 735
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	3 cut(s)	362, 746, 786
BsnI	GGCC	2 cut(s)	739, 793
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	349, 583, 688
BspANI	GGCC	2 cut(s)	739, 793
BspCNI	CTCAG	2 cut(s)	27, 582
BspEI	TCCGGA	1 cut(s)	109
BspLI	GGNNCC	4 cut(s)	483, 738, 762, 794
BspOI	GCTAGC	1 cut(s)	666
BspPI	GGATC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	204, 725
BssECI	CCNNGG	3 cut(s)	414, 756, 788
BssMI	GATC	3 cut(s)	349, 583, 688
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	2 cut(s)	756, 788
Bst4CI	ACNGT	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	461
BstAFI	CTTAAG	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	664
BstDEI	CTNAG	3 cut(s)	35, 71, 590
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	5 cut(s)	91, 118, 385, 410, 520
BstKTI	GATC	3 cut(s)	352, 586, 691
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	3 cut(s)	349, 583, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 257, 635, 659, 745
BstNSI	RCATGY	1 cut(s)	781
BstPAI	GACNNNNGTC	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	81, 665
BstV2I	GAAGAC	2 cut(s)	774, 780
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	739, 793
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	5 cut(s)	91, 118, 385, 410, 520
Cac8I	GCNNGC	1 cut(s)	664
Cfr13I	GGNCC	3 cut(s)	737, 760, 792
CseI	GACGC	2 cut(s)	29, 450
CviAII	CATG	4 cut(s)	139, 182, 778, 798
DdeI	CTNAG	3 cut(s)	35, 71, 590
DpnI	GATC	3 cut(s)	351, 585, 690
DpnII	GATC	3 cut(s)	349, 583, 688
DriI	GACNNNNNGTC	1 cut(s)	758
Eam1105I	GACNNNNNGTC	1 cut(s)	758
Eco130I	CCWWGG	2 cut(s)	756, 788
Eco47I	GGWCC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	756, 788
ErhI	CCWWGG	2 cut(s)	756, 788
FaeI	CATG	4 cut(s)	142, 185, 781, 801
FaqI	GGGAC	3 cut(s)	362, 746, 786
FatI	CATG	4 cut(s)	138, 181, 777, 797
Fnu4HI	GCNGC	2 cut(s)	95, 654
FokI	GGATG	5 cut(s)	98, 125, 372, 397, 527
Fsp4HI	GCNGC	2 cut(s)	95, 654
FspBI	CTAG	7 cut(s)	12, 99, 143, 471, 549, 663, 789
GluI	GCNGC	2 cut(s)	95, 654
GsaI	CCCAGC	2 cut(s)	137, 460
GsuI	CTGGAG	2 cut(s)	195, 698
HaeIII	GGCC	2 cut(s)	739, 793
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	2 cut(s)	29, 450
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	142, 185, 781, 801
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	59, 709
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	202, 777
Hpy166II	GTNNAC	2 cut(s)	19, 465
Hpy188I	TCNGA	1 cut(s)	591
Hpy188III	TCNNGA	3 cut(s)	110, 549, 610
Hpy8I	GTNNAC	2 cut(s)	19, 465
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	181, 204, 518, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 257, 635, 659, 745
HpyF3I	CTNAG	3 cut(s)	35, 71, 590
HpySE526I	ACGT	1 cut(s)	604
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	142, 185, 781, 801
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	349, 583, 688
LmnI	GCTCC	2 cut(s)	214, 598
Lsp1109I	GCAGC	2 cut(s)	81, 665
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	7 cut(s)	12, 99, 143, 471, 549, 663, 789
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	5 cut(s)	121, 284, 308, 499, 619
MalI	GATC	3 cut(s)	351, 585, 690
MboI	GATC	3 cut(s)	349, 583, 688
MboII	GAAGA	5 cut(s)	296, 340, 578, 774, 785
MfeI	CAATTG	3 cut(s)	280, 294, 741
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	8 cut(s)	146, 219, 275, 280, 294, 538, 632, 741
MlyI	GAGTC	1 cut(s)	53
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	3 cut(s)	324, 450, 510
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	110
MunI	CAATTG	3 cut(s)	280, 294, 741
MwoI	GCNNNNNNNGC	5 cut(s)	178, 257, 635, 659, 745
NdeII	GATC	3 cut(s)	349, 583, 688
NheI	GCTAGC	1 cut(s)	662
NlaIII	CATG	4 cut(s)	142, 185, 781, 801
NlaIV	GGNNCC	4 cut(s)	483, 738, 762, 794
NmuCI	GTSAC	3 cut(s)	121, 284, 619
NspI	RCATGY	1 cut(s)	781
PciI	ACATGT	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	709
PkrI	GCNGC	2 cut(s)	96, 655
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	777
PshAI	GACNNNNGTC	1 cut(s)	617
Psp1406I	AACGTT	1 cut(s)	604
PspFI	CCCAGC	2 cut(s)	133, 456
PspN4I	GGNNCC	4 cut(s)	483, 738, 762, 794
PspPI	GGNCC	3 cut(s)	737, 760, 792
PsuI	RGATCY	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	324, 450, 510
SatI	GCNGC	2 cut(s)	95, 654
Sau3AI	GATC	3 cut(s)	349, 583, 688
Sau96I	GGNCC	3 cut(s)	737, 760, 792
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	760
SmlI	CTYRAG	3 cut(s)	323, 401, 644
SmoI	CTYRAG	3 cut(s)	323, 401, 644
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	8 cut(s)	146, 219, 275, 280, 294, 538, 632, 741
SspMI	CTAG	7 cut(s)	12, 99, 143, 471, 549, 663, 789
StyI	CCWWGG	2 cut(s)	756, 788
TaaI	ACNGT	1 cut(s)	165
TaiI	ACGT	1 cut(s)	607
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	8 cut(s)	146, 219, 275, 280, 294, 538, 632, 741
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	3 cut(s)	324, 450, 510
Tru9I	TTAA	3 cut(s)	324, 450, 510
TseFI	GTSAC	3 cut(s)	121, 284, 619
TseI	GCWGC	2 cut(s)	94, 653
Tsp45I	GTSAC	3 cut(s)	121, 284, 619
TspDTI	ATGAA	1 cut(s)	786
TspGWI	ACGGA	2 cut(s)	166, 403
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	760
XapI	RAATTY	2 cut(s)	275, 538
XbaI	TCTAGA	1 cut(s)	548
XceI	RCATGY	1 cut(s)	781
XmaJI	CCTAGG	1 cut(s)	788
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	7 cut(s)	12, 99, 143, 471, 549, 663, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.