Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

91590685 .. 91591919

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTGAGTGGGAGAGGACGTGGTCGTGTGACCTCGGTTGGCGTGTTATCGGACCTAGTCTCGGGCACCTCCTCCGGACGATTATGCAGCAATAGTGAGGCGGAGAGTGATTATGGTGGCTCGAAGCGAGGTGGAACTATCAAATACGACTCCGTAAAGCTAAGATTGATTGGGGATGATGAGCTGCCTAGTAGTCCTCCGGATGGGTTTGTTACTCTATACCCGGCCATGCTAGAATTAGGGAAGTGGCGGAAACTGAATTCTCTCTCTAGAGTTGTGAAGGAGAGATTCAAAATTTTACTTGATCTTCCGAGGGAGGAGCGACGTTTCAAGACAATTGTCACGAAAGCGAAATTGGCGAGACTTGGGATAGCGACTCCGGCTAGAAATATGACACTTGACAAGAATGATCCTAGACTTCGTGCAAGGATTCTCCAGCAACGTCAAGCCATAAAGGGGCCAATTGTGCCCGGACCTTTGGTCCCTTCCAATGAAGGCGTGTCTTCACCTAGGCCCCCAAGTCCCAAGTTTCGGGCCGACCACCGAGGCTTCCATCACCTCCCGGATTTAGGAGGGCAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.35

Weight (kDa)

10.53

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccIII	TCCGGA	2 cut(s)	74, 199
AciI	CCGC	2 cut(s)	101, 250
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	259, 294
AfiI	CCNNNNNNNGG	5 cut(s)	61, 203, 456, 531, 569
AgsI	TTSAA	2 cut(s)	292, 331
AhdI	GACNNNNNGTC	1 cut(s)	479
AjiI	CACGTC	1 cut(s)	20
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	2 cut(s)	160, 184
AluI	AGCT	2 cut(s)	160, 184
Alw26I	GTCTC	2 cut(s)	64, 355
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	61
Aor13HI	TCCGGA	2 cut(s)	74, 199
AoxI	GGCC	4 cut(s)	225, 458, 512, 534
ApeKI	GCWGC	2 cut(s)	87, 184
ApoI	RAATTY	2 cut(s)	259, 294
AspA2I	CCTAGG	1 cut(s)	509
AspS9I	GGNCC	6 cut(s)	52, 458, 473, 481, 513, 534
AsuC2I	CCSGG	3 cut(s)	224, 471, 563
AsuHPI	GGTGA	2 cut(s)	498, 548
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	3 cut(s)	52, 473, 481
AvrII	CCTAGG	1 cut(s)	509
BaeGI	GKGCMC	2 cut(s)	68, 471
BanI	GGYRCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	2 cut(s)	99, 171
BccI	CCATC	2 cut(s)	197, 561
BcnI	CCSGG	3 cut(s)	224, 471, 563
BcoDI	GTCTC	2 cut(s)	64, 355
BfaI	CTAG	7 cut(s)	56, 189, 233, 270, 384, 414, 510
BisI	GCNGC	2 cut(s)	88, 185
BlnI	CCTAGG	1 cut(s)	509
BlsI	GCNGC	2 cut(s)	89, 186
Bme1390I	CCNGG	3 cut(s)	224, 471, 563
Bme18I	GGWCC	3 cut(s)	52, 473, 481
BmeRI	GACNNNNNGTC	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	6 cut(s)	52, 458, 473, 481, 513, 534
BmiI	GGNNCC	4 cut(s)	67, 459, 483, 515
BmrFI	CCNGG	3 cut(s)	224, 471, 563
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	419
BpuMI	CCSGG	3 cut(s)	224, 471, 563
BsaJI	CCNNGG	4 cut(s)	33, 311, 509, 544
BsaWI	WCCGGW	2 cut(s)	74, 199
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 203, 456, 531, 569
Bse3DI	GCAATG	1 cut(s)	584
BseAI	TCCGGA	2 cut(s)	74, 199
BseDI	CCNNGG	4 cut(s)	33, 311, 509, 544
BseGI	GGATG	2 cut(s)	181, 208
BseLI	CCNNNNNNNGG	5 cut(s)	61, 203, 456, 531, 569
BseMI	GCAATG	1 cut(s)	584
BseRI	GAGGAG	2 cut(s)	61, 332
BseSI	GKGCMC	2 cut(s)	68, 471
BseXI	GCAGC	2 cut(s)	99, 171
BshFI	GGCC	4 cut(s)	227, 460, 514, 536
BshNI	GGYRCC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	6 cut(s)	75, 200, 224, 380, 471, 563
BslFI	GGGAC	2 cut(s)	467, 507
BslI	CCNNNNNNNGG	5 cut(s)	61, 203, 456, 531, 569
BsmAI	GTCTC	2 cut(s)	64, 355
BsmFI	GGGAC	2 cut(s)	467, 507
BsnI	GGCC	4 cut(s)	227, 460, 514, 536
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	68, 471
Bsp13I	TCCGGA	2 cut(s)	74, 199
Bsp143I	GATC	2 cut(s)	304, 409
BspACI	CCGC	2 cut(s)	101, 250
BspANI	GGCC	4 cut(s)	227, 460, 514, 536
BspEI	TCCGGA	2 cut(s)	74, 199
BspLI	GGNNCC	4 cut(s)	67, 459, 483, 515
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	584
BssECI	CCNNGG	4 cut(s)	33, 311, 509, 544
BssMI	GATC	2 cut(s)	304, 409
BssT1I	CCWWGG	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	181, 208
BstKTI	GATC	2 cut(s)	307, 412
BstMAI	GTCTC	2 cut(s)	64, 355
BstMBI	GATC	2 cut(s)	304, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 380, 466
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	222, 469, 561
BstSLI	GKGCMC	2 cut(s)	68, 471
BstV1I	GCAGC	2 cut(s)	99, 171
BstV2I	GAAGAC	1 cut(s)	495
BsuRI	GGCC	4 cut(s)	227, 460, 514, 536
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	181, 208
Cfr13I	GGNCC	6 cut(s)	52, 458, 473, 481, 513, 534
CviAII	CATG	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	2 cut(s)	306, 411
DpnII	GATC	2 cut(s)	304, 409
DriI	GACNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	479
EciI	GGCGGA	2 cut(s)	116, 265
Eco130I	CCWWGG	1 cut(s)	509
Eco47I	GGWCC	3 cut(s)	52, 473, 481
Eco88I	CYCGRG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	1 cut(s)	232
FaiI	YATR	6 cut(s)	85, 114, 220, 230, 392, 452
FaqI	GGGAC	2 cut(s)	467, 507
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	88, 185
FokI	GGATG	2 cut(s)	188, 215
Fsp4HI	GCNGC	2 cut(s)	88, 185
FspBI	CTAG	7 cut(s)	56, 189, 233, 270, 384, 414, 510
GluI	GCNGC	2 cut(s)	88, 185
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	4 cut(s)	227, 460, 514, 536
HapII	CCGG	6 cut(s)	75, 200, 224, 380, 471, 563
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	4 cut(s)	149, 288, 376, 430
HpaII	CCGG	6 cut(s)	75, 200, 224, 380, 471, 563
HphI	GGTGA	2 cut(s)	498, 548
Hpy188I	TCNGA	2 cut(s)	52, 312
Hpy188III	TCNNGA	5 cut(s)	75, 200, 270, 331, 343
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	3 cut(s)	274, 488, 495
HpyCH4IV	ACGT	3 cut(s)	19, 325, 442
HpyCH4V	TGCA	2 cut(s)	87, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 380, 466
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	3 cut(s)	19, 325, 442
Hsp92II	CATG	1 cut(s)	232
Kpn2I	TCCGGA	2 cut(s)	74, 199
Kzo9I	GATC	2 cut(s)	304, 409
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	88, 213, 237, 393, 449, 484, 576
Lsp1109I	GCAGC	2 cut(s)	99, 171
MaeI	CTAG	7 cut(s)	56, 189, 233, 270, 384, 414, 510
MaeII	ACGT	3 cut(s)	19, 325, 442
MaeIII	GTNAC	3 cut(s)	28, 211, 340
MalI	GATC	2 cut(s)	306, 411
MboI	GATC	2 cut(s)	304, 409
MboII	GAAGA	2 cut(s)	299, 495
MfeI	CAATTG	2 cut(s)	336, 462
MhlI	GDGCHC	2 cut(s)	68, 471
MluCI	AATT	6 cut(s)	236, 259, 294, 336, 353, 462
MlyI	GAGTC	2 cut(s)	143, 370
MroI	TCCGGA	2 cut(s)	74, 199
MspI	CCGG	6 cut(s)	75, 200, 224, 380, 471, 563
MspR9I	CCNGG	3 cut(s)	224, 471, 563
MunI	CAATTG	2 cut(s)	336, 462
MwoI	GCNNNNNNNGC	3 cut(s)	356, 380, 466
NciI	CCSGG	3 cut(s)	224, 471, 563
NdeII	GATC	2 cut(s)	304, 409
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	4 cut(s)	67, 459, 483, 515
NmuCI	GTSAC	2 cut(s)	28, 340
PfeI	GAWTC	2 cut(s)	288, 430
PflFI	GACNNNGTC	2 cut(s)	21, 56
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	2 cut(s)	89, 186
PleI	GAGTC	2 cut(s)	143, 370
PpsI	GAGTC	2 cut(s)	143, 370
PshAI	GACNNNNGTC	1 cut(s)	338
PspN4I	GGNNCC	4 cut(s)	67, 459, 483, 515
PspPI	GGNCC	6 cut(s)	52, 458, 473, 481, 513, 534
PsyI	GACNNNGTC	2 cut(s)	21, 56
SatI	GCNGC	2 cut(s)	88, 185
Sau3AI	GATC	2 cut(s)	304, 409
Sau96I	GGNCC	6 cut(s)	52, 458, 473, 481, 513, 534
SchI	GAGTC	2 cut(s)	143, 370
ScrFI	CCNGG	3 cut(s)	224, 471, 563
SduI	GDGCHC	2 cut(s)	68, 471
SinI	GGWCC	3 cut(s)	52, 473, 481
Sse9I	AATT	6 cut(s)	236, 259, 294, 336, 353, 462
SsiI	CCGC	2 cut(s)	101, 250
SspMI	CTAG	7 cut(s)	56, 189, 233, 270, 384, 414, 510
StyD4I	CCNGG	3 cut(s)	222, 469, 561
StyI	CCWWGG	1 cut(s)	509
TaiI	ACGT	3 cut(s)	22, 328, 445
TaqI	TCGA	1 cut(s)	122
TasI	AATT	6 cut(s)	236, 259, 294, 336, 353, 462
TfiI	GAWTC	2 cut(s)	288, 430
TseFI	GTSAC	2 cut(s)	28, 340
TseI	GCWGC	2 cut(s)	87, 184
Tsp45I	GTSAC	2 cut(s)	28, 340
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	142
Tth111I	GACNNNGTC	2 cut(s)	21, 56
VpaK11BI	GGWCC	3 cut(s)	52, 473, 481
XapI	RAATTY	2 cut(s)	259, 294
XbaI	TCTAGA	1 cut(s)	269
XmaJI	CCTAGG	1 cut(s)	509
XspI	CTAG	7 cut(s)	56, 189, 233, 270, 384, 414, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.