Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

46417450 .. 46430997

Gene Structure 13548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCGAGTTGCGAAAGCGCCGAGGAGAGGGAGAAAACGCGGGAGGAAGGAGAGAGAAGAAGAAAGAAAAACTTACCAGCCACATGGGTGACAACATCGCCACTTATGGCATCACCTCTAGGGACAGCGCTAGTTTAATGGCCAGCGATGGCCTCGGGTATGGCGGCGGGGCTCGCCACGGTTCCCTCTGCTCGGCTTCCATTCCGAACTTCGCAAATTCATCATCTCAAATTGTTCATATTGCGTGTCCTCTCAAGGATGAACATCTAGCTTTGATGGGGGGCGACATCTGCTGCTATGTCGGAAAACTTGGGTTTGCATGGGTTAGAGAAGGACTTCATGGGTCAAGGATTAGAATCGGCGGTCGGTGGTCCTATACTACGTGTTTGGAGTCTTGTAGTGGCTCCTCCTTCAAAAAGGGGCTTCAAATGTTGAGTGGGAGAGGCGGTGGTCATGTGACTTCGGTTGGCATGTCGTTTGGGCCTAGGTTCCGGGCGCTTGGTCTGAACGATTATACAGTAATAATGAGGCAAAGAGTTATTATGGCAGATCGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

19.96

Weight (kDa)

9.73

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	5 cut(s)	41, 165, 168, 363, 447
AcoI	YGGCCR	2 cut(s)	3, 141
AcsI	RAATTY	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	2 cut(s)	28, 193
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	415, 428
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	4 cut(s)	3, 141, 151, 482
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	336
AspA2I	CCTAGG	1 cut(s)	485
AspLEI	GCGC	3 cut(s)	21, 131, 499
AspS9I	GGNCC	2 cut(s)	372, 482
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	101, 106
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	372
AvrII	CCTAGG	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	2 cut(s)	143, 271
BcnI	CCSGG	1 cut(s)	494
BfaI	CTAG	4 cut(s)	120, 132, 269, 486
BfoI	RGCGCY	3 cut(s)	22, 132, 500
BisI	GCNGC	2 cut(s)	166, 295
BlnI	CCTAGG	1 cut(s)	485
BlsI	GCNGC	2 cut(s)	167, 296
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	372, 482
BmiI	GGNNCC	3 cut(s)	184, 406, 491
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	494
BsaAI	YACGTR	1 cut(s)	384
BsaBI	GATNNNNATC	2 cut(s)	264, 356
BsaJI	CCNNGG	4 cut(s)	22, 154, 178, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 193
Bse8I	GATNNNNATC	2 cut(s)	264, 356
BseDI	CCNNGG	4 cut(s)	22, 154, 178, 485
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	2 cut(s)	264, 356
BseLI	CCNNNNNNNGG	2 cut(s)	28, 193
BseRI	GAGGAG	2 cut(s)	39, 397
BseXI	GCAGC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	4 cut(s)	5, 143, 153, 484
BsiEI	CGRYCG	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	28, 193
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	5, 143, 153, 484
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	5 cut(s)	41, 165, 168, 363, 447
BspANI	GGCC	4 cut(s)	5, 143, 153, 484
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	3 cut(s)	184, 406, 491
BssECI	CCNNGG	4 cut(s)	22, 154, 178, 485
BssMI	GATC	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	182, 520
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	145, 175
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	3 cut(s)	22, 132, 500
BstHHI	GCGC	3 cut(s)	21, 131, 499
BstKTI	GATC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	550
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 291
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	281
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	5, 143, 153, 484
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	2 cut(s)	82, 162
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	145, 175
CfoI	GCGC	3 cut(s)	21, 131, 499
Cfr13I	GGNCC	2 cut(s)	372, 482
CviAII	CATG	5 cut(s)	85, 321, 341, 455, 472
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	3, 141
Eco130I	CCWWGG	1 cut(s)	485
Eco24I	GRGCYC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	372
Eco47III	AGCGCT	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	5 cut(s)	88, 324, 344, 458, 475
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	84, 320, 340, 454, 471
FauI	CCCGC	2 cut(s)	34, 161
Fnu4HI	GCNGC	2 cut(s)	166, 295
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	166, 295
FspBI	CTAG	4 cut(s)	120, 132, 269, 486
GlaI	GCGC	3 cut(s)	20, 130, 498
GluI	GCNGC	2 cut(s)	166, 295
HaeII	RGCGCY	3 cut(s)	22, 132, 500
HaeIII	GGCC	4 cut(s)	5, 143, 153, 484
HapII	CCGG	1 cut(s)	493
HhaI	GCGC	3 cut(s)	21, 131, 499
Hin1II	CATG	5 cut(s)	88, 324, 344, 458, 475
Hin6I	GCGC	3 cut(s)	19, 129, 497
HinP1I	GCGC	3 cut(s)	19, 129, 497
HinfI	GANTC	2 cut(s)	357, 392
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	2 cut(s)	101, 106
Hpy188I	TCNGA	3 cut(s)	207, 305, 507
HpyAV	CCTTC	3 cut(s)	42, 326, 421
HpyCH4III	ACNGT	2 cut(s)	182, 520
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 291
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	5 cut(s)	88, 324, 344, 458, 475
HspAI	GCGC	3 cut(s)	19, 129, 497
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	3 cut(s)	91, 157, 506
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	4 cut(s)	120, 132, 269, 486
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	89, 457
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	2 cut(s)	70, 73
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	217, 231
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	174, 291
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	88, 324, 344, 458, 475
NlaIV	GGNNCC	3 cut(s)	184, 406, 491
NmeAIII	GCCGAG	3 cut(s)	31, 47, 173
NmuCI	GTSAC	2 cut(s)	89, 457
NspI	RCATGY	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	167, 296
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	184, 406, 491
PspPI	GGNCC	2 cut(s)	372, 482
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	166, 295
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	2 cut(s)	372, 482
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	4 cut(s)	119, 274, 386, 491
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	217, 231
SsiI	CCGC	5 cut(s)	41, 165, 168, 363, 447
SspMI	CTAG	4 cut(s)	120, 132, 269, 486
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	182, 520
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	553
TasI	AATT	2 cut(s)	217, 231
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	89, 457
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	2 cut(s)	89, 457
TspDTI	ATGAA	4 cut(s)	210, 227, 276, 329
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	217
XceI	RCATGY	1 cut(s)	475
XmaJI	CCTAGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	4 cut(s)	120, 132, 269, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.