Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Forward (+)

6960961 .. 6961758

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG090900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCTTCACCTAGGCCCCCAAGTCCCAAGTTTCGGGCCCGACCACCCAGGCCTTCATCACCTCCTGGATTTAGGAGGGCATCGATCAGATCTCCCATCGATTCGTTTAAAAAAGCTTTGGGTAAAAGAAAAATGAGTGAAGAGGCGCAGGGTAAGCAAGACCTTCTCAAGAAGAAAATGAGGGTGGATGATGAGGTCGAAAATCTCATGGAAGATGCCCAGAGGGAGACTCGGCAGTCTAAGGCTAGGCAGCGAGTTGACACTCTAGGTGTGCGCTACAGTCAAGTTGACGTTCCAGAATTTCTTTCTGATTACGATGGGGACATGATGGGGCTTGTTGATACTAAGGCTTATGCTGCAAATTTTGGGGAGGGCGAACTCGAGGGAGAACTTGATTCCCTTGTGGAAGGGGCTAAGAGTTCTTTGATTTTGGCCAATTTGAAAAATCATCTCATACTTGACAAGATGGCGGAGAGGATTCGTGAATTGGATTCCCAGATGCTTGCAGCCAACAAGGAGCTGAAGGCAACTAAGACTCAGCTCGGTCAAAAGAAGAAGGATATGGCTAAAATAGAGGATTATCACAAAAGACTGAAGGAAAAAGAGACGGAGGTTGATCAGTTGGGAGAAAAGGTTAAGGGCCTGGAGAAGGAACTCAGGGTTAAGGCCAAAGAGTGTAAGAACAGCAAGGATTTGGTGGTGGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.79

Weight (kDa)

9.25

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AciI	CCGC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	299, 361
AcuI	CTGAAG	2 cut(s)	542, 614
AfiI	CCNNNNNNNGG	2 cut(s)	33, 649
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	3 cut(s)	47, 64, 642
AluBI	AGCT	3 cut(s)	116, 520, 541
AluI	AGCT	3 cut(s)	116, 520, 541
Alw26I	GTCTC	2 cut(s)	221, 599
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	6 cut(s)	14, 36, 50, 432, 640, 666
ApaI	GGGCCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	250, 356, 506
ApoI	RAATTY	2 cut(s)	299, 361
AspA2I	CCTAGG	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	148, 276
AspS9I	GGNCC	4 cut(s)	15, 36, 37, 640
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	380
AvrII	CCTAGG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	262, 343, 518
BccI	CCATC	4 cut(s)	104, 311, 322, 460
BciT130I	CCWGG	3 cut(s)	49, 66, 644
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	2 cut(s)	221, 599
BfaI	CTAG	4 cut(s)	12, 246, 266, 709
BfmI	CTRYAG	1 cut(s)	277
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	3 cut(s)	251, 357, 507
BlnI	CCTAGG	1 cut(s)	11
BlsI	GCNGC	3 cut(s)	252, 358, 508
Bme1390I	CCNGG	3 cut(s)	49, 66, 644
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	4 cut(s)	15, 36, 37, 640
BmiI	GGNNCC	2 cut(s)	17, 38
BmrFI	CCNGG	3 cut(s)	49, 66, 644
BmsI	GCATC	3 cut(s)	89, 205, 489
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	152
Bsa29I	ATCGAT	2 cut(s)	83, 99
BsaJI	CCNNGG	2 cut(s)	11, 47
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 649
BseBI	CCWGG	3 cut(s)	49, 66, 644
BseCI	ATCGAT	2 cut(s)	83, 99
BseDI	CCNNGG	2 cut(s)	11, 47
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	33, 649
BseMII	CTCAG	2 cut(s)	551, 670
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	262, 343, 518
BshFI	GGCC	6 cut(s)	16, 38, 52, 434, 642, 668
BshVI	ATCGAT	2 cut(s)	83, 99
BsiHKCI	CYCGRG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	9, 335
BslI	CCNNNNNNNGG	2 cut(s)	33, 649
BsmAI	GTCTC	2 cut(s)	221, 599
BsmBI	CGTCTC	1 cut(s)	599
BsmFI	GGGAC	2 cut(s)	9, 335
BsnI	GGCC	6 cut(s)	16, 38, 52, 434, 642, 668
BsoBI	CYCGRG	1 cut(s)	380
Bsp120I	GGGCCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	84, 89, 616
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	6 cut(s)	16, 38, 52, 434, 642, 668
BspCNI	CTCAG	2 cut(s)	550, 669
BspDI	ATCGAT	2 cut(s)	83, 99
BspLI	GGNNCC	2 cut(s)	17, 38
BssECI	CCNNGG	2 cut(s)	11, 47
BssMI	GATC	3 cut(s)	84, 89, 616
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	3 cut(s)	49, 66, 644
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	6 cut(s)	240, 345, 414, 531, 537, 656
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	148, 276
BstKTI	GATC	3 cut(s)	87, 92, 619
BstMAI	GTCTC	2 cut(s)	221, 599
BstMBI	GATC	3 cut(s)	84, 89, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 356
BstNI	CCWGG	3 cut(s)	49, 66, 644
BstSCI	CCNGG	3 cut(s)	47, 64, 642
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	262, 343, 518
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
Bsu15I	ATCGAT	2 cut(s)	83, 99
BsuRI	GGCC	6 cut(s)	16, 38, 52, 434, 642, 668
BsuTUI	ATCGAT	2 cut(s)	83, 99
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	2 cut(s)	148, 276
Cfr13I	GGNCC	4 cut(s)	15, 36, 37, 640
ClaI	ATCGAT	2 cut(s)	83, 99
CviAII	CATG	2 cut(s)	208, 325
DdeI	CTNAG	6 cut(s)	240, 345, 414, 531, 537, 656
DpnI	GATC	3 cut(s)	86, 91, 618
DpnII	GATC	3 cut(s)	84, 89, 616
DraI	TTTAAA	1 cut(s)	109
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	542, 614
Eco88I	CYCGRG	1 cut(s)	380
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoO109I	RGGNCCY	2 cut(s)	15, 640
EcoRII	CCWGG	3 cut(s)	47, 64, 642
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	2 cut(s)	211, 328
FaiI	YATR	5 cut(s)	209, 326, 354, 455, 563
FaqI	GGGAC	2 cut(s)	9, 335
FatI	CATG	2 cut(s)	207, 324
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	251, 357, 507
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	3 cut(s)	251, 357, 507
FspBI	CTAG	4 cut(s)	12, 246, 266, 709
GlaI	GCGC	2 cut(s)	147, 275
GluI	GCNGC	3 cut(s)	251, 357, 507
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	6 cut(s)	16, 38, 52, 434, 642, 668
HhaI	GCGC	2 cut(s)	148, 276
Hin1II	CATG	2 cut(s)	211, 328
Hin6I	GCGC	2 cut(s)	146, 274
HinP1I	GCGC	2 cut(s)	146, 274
HincII	GTYRAC	2 cut(s)	259, 289
HindII	GTYRAC	2 cut(s)	259, 289
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	6 cut(s)	101, 229, 395, 478, 491, 535
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	259, 289
Hpy188I	TCNGA	2 cut(s)	89, 310
Hpy188III	TCNNGA	3 cut(s)	169, 296, 482
Hpy8I	GTNNAC	2 cut(s)	259, 289
HpyAV	CCTTC	7 cut(s)	63, 173, 401, 517, 550, 589, 643
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	359, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 356
HpyF3I	CTNAG	6 cut(s)	240, 345, 414, 531, 537, 656
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	211, 328
HspAI	GCGC	2 cut(s)	146, 274
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	84, 89, 616
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	262, 343, 518
LweI	GCATC	3 cut(s)	89, 205, 489
MaeI	CTAG	4 cut(s)	12, 246, 266, 709
MaeII	ACGT	1 cut(s)	291
MalI	GATC	3 cut(s)	86, 91, 618
MboI	GATC	3 cut(s)	84, 89, 616
MboII	GAAGA	4 cut(s)	152, 184, 224, 565
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	4 cut(s)	299, 361, 436, 485
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	223, 529
Mox20I	TGGCCA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	3 cut(s)	108, 636, 663
Msp20I	TGGCCA	1 cut(s)	434
MspR9I	CCNGG	3 cut(s)	49, 66, 644
MvaI	CCWGG	3 cut(s)	49, 66, 644
MwoI	GCNNNNNNNGC	2 cut(s)	154, 356
NdeII	GATC	3 cut(s)	84, 89, 616
NlaIII	CATG	2 cut(s)	211, 328
NlaIV	GGNNCC	2 cut(s)	17, 38
NmeAIII	GCCGAG	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	52
PfeI	GAWTC	4 cut(s)	101, 395, 478, 491
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	252, 358, 508
PleI	GAGTC	2 cut(s)	223, 529
PpsI	GAGTC	2 cut(s)	223, 529
Psp6I	CCWGG	3 cut(s)	47, 64, 642
PspGI	CCWGG	3 cut(s)	47, 64, 642
PspN4I	GGNNCC	2 cut(s)	17, 38
PspOMI	GGGCCC	1 cut(s)	36
PspPI	GGNCC	4 cut(s)	15, 36, 37, 640
PspXI	VCTCGAGB	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	108, 636, 663
SatI	GCNGC	3 cut(s)	251, 357, 507
Sau3AI	GATC	3 cut(s)	84, 89, 616
Sau96I	GGNCC	4 cut(s)	15, 36, 37, 640
SchI	GAGTC	2 cut(s)	223, 529
ScrFI	CCNGG	3 cut(s)	49, 66, 644
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	3 cut(s)	89, 205, 489
SfcI	CTRYAG	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	380
SlaI	CTCGAG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	167, 380
SmoI	CTYRAG	2 cut(s)	167, 380
Sse9I	AATT	4 cut(s)	299, 361, 436, 485
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	4 cut(s)	12, 246, 266, 709
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	47, 64, 642
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	4 cut(s)	83, 99, 198, 381
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	4 cut(s)	299, 361, 436, 485
TfiI	GAWTC	4 cut(s)	101, 395, 478, 491
Tru1I	TTAA	3 cut(s)	108, 636, 663
Tru9I	TTAA	3 cut(s)	108, 636, 663
TseI	GCWGC	3 cut(s)	250, 356, 506
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	623
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	2 cut(s)	299, 361
XhoI	CTCGAG	1 cut(s)	380
XmaJI	CCTAGG	1 cut(s)	11
XspI	CTAG	4 cut(s)	12, 246, 266, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.