Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

65880045 .. 65881778

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTGAGTGGGAGAGGCCGTGGTCGTGTGACTTCGGTTGGCGTGTTATCCGGACCTAGTCTCCGGGCGCTTCCTCCGGACGATTATGCAGCAATAGTGAGGCGGAGAGTGATTATGGTATTAGGATACCGTTCCAGCCCTCCGTGCATGGTTGGTTGTGACCCACCAATTGAAGTTCTTCGTTACCATTTGCGGCTTAAGAAGAACGTATCGCCGACCAAAGATCCTATTGAGGGTTTTTATTGTATTGTCCCTCAACGTCCTGCCATTGTACTTGAGCTTCCATCCGTGGTTAAAACTTGGAGGAATAAGTGGTTTTATGTTAAGGGTTGGGCGTCTACCTCTAGTGGTGGAGTTCCAGCCCCCAACATTGTTACCCATTTTAAGGATGCGAAGTTAGATATGACACTTGACAGAATGATCCTGGACTTCGTGCAAGGATTCTCCGGCAACGTCGAGGCCATAAAGGGGCCAATTGTGCCCGGACCTTTGGGTAAGCAAGACCCTCCGAAGAAGAAAACGAGGGTGGATGACGAGGGCGACAATCTCAAGGAAGATGCGAAGAGGGAGACTCGTCGGTCCAAGGCTACGCGGCGAGTTGACACTCCGGTGTGCACCACCGTCGGGTTGACGTTCCGAGTTTCTTTCGATTATGTTGGGGACATGATGGGACTTGTCGATACTAAGACTTATACCGCAAATTTTGGGACGGGTGAACTCGAAGGAGAACTTGATTCCCTTGTGGAAGGGGCTAAGAGCCAATTTGAAGAATCATCTCATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

28.8

Weight (kDa)

9.21

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	338
AccII	CGCG	1 cut(s)	592
AccIII	TCCGGA	2 cut(s)	50, 76
AciI	CCGC	4 cut(s)	103, 193, 592, 696
AclWI	GGATC	2 cut(s)	218, 415
AcsI	RAATTY	1 cut(s)	700
AcyI	GRCGYC	1 cut(s)	335
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	4 cut(s)	233, 385, 468, 624
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	173, 767
AjnI	CCWGG	1 cut(s)	423
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	2 cut(s)	65, 563
Alw44I	GTGCAC	1 cut(s)	613
AlwI	GGATC	2 cut(s)	218, 415
Aor13HI	TCCGGA	2 cut(s)	50, 76
AoxI	GGCC	3 cut(s)	16, 459, 470
ApaLI	GTGCAC	1 cut(s)	613
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	700
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	4 cut(s)	53, 470, 485, 579
AsuC2I	CCSGG	2 cut(s)	65, 483
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	3 cut(s)	53, 485, 579
BaeGI	GKGCMC	2 cut(s)	483, 617
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
Bbv12I	GWGCWC	1 cut(s)	617
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	2 cut(s)	292, 661
BceAI	ACGGC	1 cut(s)	3
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	1 cut(s)	425
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	65, 483
BcoDI	GTCTC	2 cut(s)	65, 563
BfaI	CTAG	2 cut(s)	57, 345
BfoI	RGCGCY	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	90, 194, 593
BlsI	GCNGC	3 cut(s)	91, 195, 594
Bme1390I	CCNGG	3 cut(s)	65, 425, 483
Bme18I	GGWCC	3 cut(s)	53, 485, 579
BmgT120I	GGNCC	4 cut(s)	53, 470, 485, 579
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	3 cut(s)	65, 425, 483
BmsI	GCATC	2 cut(s)	379, 547
BplI	GAGNNNNNCTC	2 cut(s)	556, 588
BpuEI	CTTGAG	2 cut(s)	296, 533
BpuMI	CCSGG	2 cut(s)	65, 483
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	19, 288, 582
BsaWI	WCCGGW	3 cut(s)	50, 76, 607
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 45, 75
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 385, 468, 624
BseAI	TCCGGA	2 cut(s)	50, 76
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	3 cut(s)	19, 288, 582
BseGI	GGATG	3 cut(s)	284, 394, 535
BseLI	CCNNNNNNNGG	4 cut(s)	233, 385, 468, 624
BseSI	GKGCMC	2 cut(s)	483, 617
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	592
BshFI	GGCC	3 cut(s)	18, 461, 472
BsiHKAI	GWGCWC	1 cut(s)	617
BsiSI	CCGG	6 cut(s)	51, 64, 77, 447, 483, 608
BslFI	GGGAC	4 cut(s)	236, 674, 684, 721
BslI	CCNNNNNNNGG	4 cut(s)	233, 385, 468, 624
BsmAI	GTCTC	2 cut(s)	65, 563
BsmFI	GGGAC	4 cut(s)	236, 674, 684, 721
BsnI	GGCC	3 cut(s)	18, 461, 472
Bsp1286I	GDGCHC	2 cut(s)	483, 617
Bsp13I	TCCGGA	2 cut(s)	50, 76
Bsp143I	GATC	2 cut(s)	223, 420
BspACI	CCGC	4 cut(s)	103, 193, 592, 696
BspANI	GGCC	3 cut(s)	18, 461, 472
BspEI	TCCGGA	2 cut(s)	50, 76
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	218, 415
BspTI	CTTAAG	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	19, 288, 582
BssMI	GATC	2 cut(s)	223, 420
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	131, 622
Bst6I	CTCTTC	1 cut(s)	557
BstACI	GRCGYC	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	684, 753
BstDSI	CCRYGG	2 cut(s)	19, 288
BstF5I	GGATG	3 cut(s)	284, 394, 535
BstFNI	CGCG	1 cut(s)	592
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	226, 423
BstMAI	GTCTC	2 cut(s)	65, 563
BstMBI	GATC	2 cut(s)	223, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 478
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	3 cut(s)	63, 423, 481
BstSLI	GKGCMC	2 cut(s)	483, 617
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	18, 461, 472
BtgI	CCRYGG	2 cut(s)	19, 288
BtsCI	GGATG	3 cut(s)	284, 394, 535
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	4 cut(s)	53, 470, 485, 579
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	148, 664
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	684, 753
DpnI	GATC	2 cut(s)	225, 422
DpnII	GATC	2 cut(s)	223, 420
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	582
Eco47I	GGWCC	3 cut(s)	53, 485, 579
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	2 cut(s)	151, 667
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FaqI	GGGAC	4 cut(s)	236, 674, 684, 721
FatI	CATG	2 cut(s)	147, 663
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	3 cut(s)	90, 194, 593
FokI	GGATG	3 cut(s)	271, 401, 542
Fsp4HI	GCNGC	3 cut(s)	90, 194, 593
FspBI	CTAG	2 cut(s)	57, 345
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	3 cut(s)	90, 194, 593
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	18, 461, 472
HapII	CCGG	6 cut(s)	51, 64, 77, 447, 483, 608
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	151, 667
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	2 cut(s)	601, 630
HindII	GTYRAC	2 cut(s)	601, 630
HinfI	GANTC	4 cut(s)	441, 571, 734, 770
HpaII	CCGG	6 cut(s)	51, 64, 77, 447, 483, 608
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	5 cut(s)	339, 601, 615, 630, 716
Hpy188I	TCNGA	2 cut(s)	510, 638
Hpy188III	TCNNGA	2 cut(s)	51, 77
Hpy8I	GTNNAC	5 cut(s)	339, 601, 615, 630, 716
Hpy99I	CGWCG	3 cut(s)	458, 579, 626
HpyAV	CCTTC	2 cut(s)	716, 740
HpyCH4III	ACNGT	2 cut(s)	131, 622
HpyCH4IV	ACGT	4 cut(s)	207, 259, 453, 632
HpyCH4V	TGCA	4 cut(s)	89, 147, 436, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 478
HpyF3I	CTNAG	2 cut(s)	684, 753
HpySE526I	ACGT	4 cut(s)	207, 259, 453, 632
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	151, 667
HspAI	GCGC	1 cut(s)	68
Kpn2I	TCCGGA	2 cut(s)	50, 76
Kzo9I	GATC	2 cut(s)	223, 420
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	379, 547
MaeI	CTAG	2 cut(s)	57, 345
MaeII	ACGT	4 cut(s)	207, 259, 453, 632
MaeIII	GTNAC	4 cut(s)	28, 158, 182, 373
MalI	GATC	2 cut(s)	225, 422
MboI	GATC	2 cut(s)	223, 420
MboII	GAAGA	7 cut(s)	170, 214, 523, 526, 566, 574, 779
MfeI	CAATTG	2 cut(s)	168, 474
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	483, 617
MluCI	AATT	5 cut(s)	168, 474, 700, 761, 781
MlyI	GAGTC	1 cut(s)	565
MroI	TCCGGA	2 cut(s)	50, 76
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	4 cut(s)	198, 294, 324, 384
MslI	CAYNNNNRTG	1 cut(s)	608
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	6 cut(s)	51, 64, 77, 447, 483, 608
MspR9I	CCNGG	3 cut(s)	65, 425, 483
MunI	CAATTG	2 cut(s)	168, 474
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	2 cut(s)	144, 478
NciI	CCSGG	2 cut(s)	65, 483
NdeII	GATC	2 cut(s)	223, 420
NlaIII	CATG	2 cut(s)	151, 667
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	2 cut(s)	28, 158
OliI	CACNNNNGTG	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	441, 734, 770
PflFI	GACNNNGTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	3 cut(s)	91, 195, 594
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	4 cut(s)	53, 470, 485, 579
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	4 cut(s)	198, 294, 324, 384
SatI	GCNGC	3 cut(s)	90, 194, 593
Sau3AI	GATC	2 cut(s)	223, 420
Sau96I	GGNCC	4 cut(s)	53, 470, 485, 579
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	3 cut(s)	65, 425, 483
SduI	GDGCHC	2 cut(s)	483, 617
SetI	ASST	8 cut(s)	58, 210, 262, 282, 344, 456, 490, 635
SfaNI	GCATC	2 cut(s)	379, 547
SinI	GGWCC	3 cut(s)	53, 485, 579
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	3 cut(s)	197, 275, 548
SmoI	CTYRAG	3 cut(s)	197, 275, 548
Sse9I	AATT	5 cut(s)	168, 474, 700, 761, 781
SsiI	CCGC	4 cut(s)	103, 193, 592, 696
SspMI	CTAG	2 cut(s)	57, 345
StyD4I	CCNGG	3 cut(s)	63, 423, 481
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	131, 622
TaiI	ACGT	4 cut(s)	210, 262, 456, 635
TaqI	TCGA	4 cut(s)	456, 648, 678, 720
TaqII	GACCGA	1 cut(s)	567
TasI	AATT	5 cut(s)	168, 474, 700, 761, 781
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	2 cut(s)	196, 595
TfiI	GAWTC	3 cut(s)	441, 734, 770
Tru1I	TTAA	4 cut(s)	198, 294, 324, 384
Tru9I	TTAA	4 cut(s)	198, 294, 324, 384
TseFI	GTSAC	2 cut(s)	28, 158
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	2 cut(s)	28, 158
TspGWI	ACGGA	2 cut(s)	132, 277
Tth111I	GACNNNGTC	1 cut(s)	57
Vha464I	CTTAAG	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	613
VpaK11BI	GGWCC	3 cut(s)	53, 485, 579
XapI	RAATTY	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	2 cut(s)	57, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.