Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004212

Physical Location & Seq

Genomic Coordinates Reverse (-)

4486035 .. 4487333

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1026400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCAGAGCCTGGAAGTTCTAGTGATGAGGGCTCTTCTAGCTTTAGCTCTAAGTCTGAGTCTGCAATGTCGGAGTCTTCAGGGTCTTTGTTAGAGTCCTGTACTAGAGAAACATTGGATGATCTTCCCAACCGTCAAACTTTAGCTATTGCTAGTTCTTCCTCCATGGCGTTGGGTGAGGGGGTTGTTTTTGATGCCATACCCATAGTTCGCTCTGAGTTCACAGCAGACCATCTAAAGAATAACTTGTTAGATAATGAGAAGCAGGTTGAGGCGCTAAGGCAGTCATGTAATATCCCTCGTAGTGTAGGGATACGTTTGGTACATGATGAAGAATGGCCTTCTGAGCCTCCCCAGGGTCATGTTATGTTCTACACCCAGATATTACTGACTTTAGGGGTGAGACTACCTTTACATCCGTGGTTGCAAAAGATGTTATCTTTGATCGGATATGCACCTGGGCAACTCAATCCTGGTTTCTGGGATACTTTGATTGGATTTTATATCATTTGGATGGAGTGTGGGTTGTGTGAGCCTTCCTTCCATCAGTGGCGTTACTGTTACAAGATGCGCCCAGCAAAATCATGCACTGGTTATGCCGAGTGTGCATGTCGGAGTGAGAGAGAGCGTATTGTGTATGGTAAGAAAAAGGCATACTACACATGGAAAAACCGTTGGTGCTTTCTGTATAATGATTGGGAGTATGATAAGGGTGTCACGCCTGAGCGACGTGTGCTTACTCACTTCCAGACTGTAGGTTGTAACGTATCAACCGTTCGTACTATTTGCTATTTGTTGTGGTCTTTTCTTGCTTCTAACACTTTGCTTCATGTAGTGACGCGGGGCACCATCCAAACTGTTTGGGCAGGAGCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006726 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016684 GO:0019221 GO:0019725 GO:0023052 GO:0033209 GO:0034097 GO:0034612 GO:0042221 GO:0042440 GO:0042441 GO:0042592 GO:0043324 GO:0043473 GO:0043474 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046148 GO:0047134 GO:0048066 GO:0048069 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF953

Protein Analysis

293

Amino Acids

33.12

Weight (kDa)

6.39

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004212)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00910 FvH4_2g19120
malus_domestica	MD00G1026400.v1.1 MD05G1342000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0325301 RchiOBHm_Chr6g0267261
rosa_laevigata	RLG00000002306 RLG00000008304 RLG00000008305 RLG00000023168 RLG00000023169 RLG00000034344 RLG00000034345
rosa_multiflora	Rmu_sc0000226.1_g000007 Rmu_sc0002280.1_g000010 Rmu_sc0002724.1_g000006 Rmu_sc0003945.1_g000015 Rmu_sc0005665.1_g000015 Rmu_sc0015523.1_g000014
rosa_roxburghii	Rroxscaffold_2G00155190 Rroxscaffold_2G00155200 Rroxscaffold_2G00155210 Rroxscaffold_2G00155220 Rroxscaffold_3G00238450 Rroxscaffold_3G00238460 Rroxscaffold_4G00318960 Rroxscaffold_4G00318980 Rroxscaffold_7G00215260
rosa_samantha	Rh1DG282300 Rh2DG050600 Rh3AG252200 Rh7AG090900 Rh7AG425200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	845
AccII	CGCG	1 cut(s)	841
AciI	CCGC	1 cut(s)	841
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	3 cut(s)	103, 324, 781
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	730
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	4 cut(s)	10, 354, 457, 472
AluBI	AGCT	4 cut(s)	42, 48, 146, 872
AluI	AGCT	4 cut(s)	42, 48, 146, 872
Alw26I	GTCTC	1 cut(s)	397
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	277, 573
AsuHPI	GGTGA	2 cut(s)	188, 412
BaeGI	GKGCMC	1 cut(s)	848
BanI	GGYRCC	1 cut(s)	845
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	69
BccI	CCATC	4 cut(s)	240, 508, 552, 857
BciT130I	CCWGG	4 cut(s)	12, 356, 459, 474
BciVI	GTATCC	2 cut(s)	306, 478
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	4 cut(s)	21, 39, 105, 153
BfmI	CTRYAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	2 cut(s)	306, 478
Bme1390I	CCNGG	4 cut(s)	12, 356, 459, 474
BmgBI	CACGTC	1 cut(s)	731
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	4 cut(s)	12, 356, 459, 474
BmsI	GCATC	2 cut(s)	184, 558
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	2 cut(s)	278, 723
BsaJI	CCNNGG	5 cut(s)	165, 354, 355, 419, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	4 cut(s)	12, 356, 459, 474
BseDI	CCNNGG	5 cut(s)	165, 354, 355, 419, 458
BseGI	GGATG	4 cut(s)	124, 415, 519, 849
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	4 cut(s)	48, 207, 336, 714
BseNI	ACTGG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	848
BseYI	CCCAGC	1 cut(s)	574
Bsh1236I	CGCG	1 cut(s)	841
BshFI	GGCC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	845
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	35, 848
Bsp143I	GATC	2 cut(s)	121, 444
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	841
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	4 cut(s)	49, 208, 337, 715
BspFNI	CGCG	1 cut(s)	841
BspLI	GGNNCC	1 cut(s)	847
BspMI	ACCTGC	1 cut(s)	256
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	5 cut(s)	165, 354, 355, 419, 458
BssMI	GATC	2 cut(s)	121, 444
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	4 cut(s)	12, 356, 459, 474
Bst4CI	ACNGT	6 cut(s)	134, 560, 674, 754, 775, 859
Bst6I	CTCTTC	1 cut(s)	40
BstDEI	CTNAG	6 cut(s)	51, 57, 216, 278, 345, 723
BstDSI	CCRYGG	2 cut(s)	165, 419
BstF5I	GGATG	4 cut(s)	124, 415, 519, 849
BstFNI	CGCG	1 cut(s)	841
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	277, 573
BstKTI	GATC	2 cut(s)	124, 447
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	121, 444
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 346, 605, 733
BstNI	CCWGG	4 cut(s)	12, 356, 459, 474
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	4 cut(s)	10, 354, 457, 472
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	848
BstUI	CGCG	1 cut(s)	841
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuI	GTATCC	2 cut(s)	306, 478
BsuRI	GGCC	1 cut(s)	340
BtgI	CCRYGG	2 cut(s)	165, 419
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	4 cut(s)	124, 415, 519, 849
BtsIMutI	CAGTG	2 cut(s)	554, 588
BveI	ACCTGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	2 cut(s)	277, 573
CseI	GACGC	1 cut(s)	847
Csp6I	GTAC	3 cut(s)	102, 323, 780
CviAII	CATG	8 cut(s)	166, 288, 326, 362, 585, 609, 663, 830
CviJI	RGCY	9 cut(s)	10, 33, 42, 48, 146, 340, 349, 535, 872
CviKI_1	RGCY	9 cut(s)	10, 33, 42, 48, 146, 340, 349, 535, 872
CviQI	GTAC	3 cut(s)	102, 323, 780
DdeI	CTNAG	6 cut(s)	51, 57, 216, 278, 345, 723
DpnI	GATC	2 cut(s)	123, 446
DpnII	GATC	2 cut(s)	121, 444
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	4 cut(s)	10, 354, 457, 472
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	8 cut(s)	169, 291, 329, 365, 588, 612, 666, 833
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	8 cut(s)	165, 287, 325, 361, 584, 608, 662, 829
FauI	CCCGC	1 cut(s)	834
FokI	GGATG	4 cut(s)	131, 402, 526, 836
FriOI	GRGCYC	1 cut(s)	35
FspBI	CTAG	4 cut(s)	21, 39, 105, 153
GlaI	GCGC	2 cut(s)	276, 572
GsaI	CCCAGC	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	340
HgaI	GACGC	1 cut(s)	847
HhaI	GCGC	2 cut(s)	277, 573
Hin1II	CATG	8 cut(s)	169, 291, 329, 365, 588, 612, 666, 833
Hin6I	GCGC	2 cut(s)	275, 571
HinP1I	GCGC	2 cut(s)	275, 571
HinfI	GANTC	3 cut(s)	59, 74, 95
HphI	GGTGA	2 cut(s)	188, 412
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	8 cut(s)	7, 58, 73, 217, 346, 449, 615, 878
Hpy188III	TCNNGA	1 cut(s)	748
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	3 cut(s)	351, 546, 550
HpyCH4III	ACNGT	6 cut(s)	134, 560, 674, 754, 775, 859
HpyCH4IV	ACGT	3 cut(s)	316, 730, 765
HpyCH4V	TGCA	5 cut(s)	65, 427, 455, 588, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 346, 605, 733
HpyF3I	CTNAG	6 cut(s)	51, 57, 216, 278, 345, 723
HpySE526I	ACGT	3 cut(s)	316, 730, 765
Hsp92II	CATG	8 cut(s)	169, 291, 329, 365, 588, 612, 666, 833
HspAI	GCGC	2 cut(s)	275, 571
Kzo9I	GATC	2 cut(s)	121, 444
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	869
LweI	GCATC	2 cut(s)	184, 558
MaeI	CTAG	4 cut(s)	21, 39, 105, 153
MaeII	ACGT	3 cut(s)	316, 730, 765
MaeIII	GTNAC	5 cut(s)	554, 560, 715, 761, 835
MalI	GATC	2 cut(s)	123, 446
MboI	GATC	2 cut(s)	121, 444
MboII	GAAGA	5 cut(s)	27, 69, 116, 150, 344
MhlI	GDGCHC	2 cut(s)	35, 848
MlyI	GAGTC	3 cut(s)	68, 83, 104
MmeI	TCCRAC	2 cut(s)	51, 593
MnlI	CCTC	6 cut(s)	22, 172, 172, 265, 309, 360
MslI	CAYNNNNRTG	1 cut(s)	512
MspR9I	CCNGG	4 cut(s)	12, 356, 459, 474
MvaI	CCWGG	4 cut(s)	12, 356, 459, 474
MvnI	CGCG	1 cut(s)	841
MwoI	GCNNNNNNNGC	4 cut(s)	39, 346, 605, 733
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	121, 444
NlaIII	CATG	8 cut(s)	169, 291, 329, 365, 588, 612, 666, 833
NlaIV	GGNNCC	1 cut(s)	847
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	2 cut(s)	715, 835
NspI	RCATGY	1 cut(s)	612
PasI	CCCWGGG	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	771
PleI	GAGTC	3 cut(s)	67, 82, 103
PpsI	GAGTC	3 cut(s)	67, 82, 103
Psp6I	CCWGG	4 cut(s)	10, 354, 457, 472
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	4 cut(s)	10, 354, 457, 472
PspN4I	GGNNCC	1 cut(s)	847
PsrI	GAACNNNNNNTAC	2 cut(s)	759, 791
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	103, 324, 781
RsaNI	GTAC	3 cut(s)	102, 323, 780
RseI	CAYNNNNRTG	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	121, 444
SchI	GAGTC	3 cut(s)	68, 83, 104
ScrFI	CCNGG	4 cut(s)	12, 356, 459, 474
SduI	GDGCHC	2 cut(s)	35, 848
SfaNI	GCATC	2 cut(s)	184, 558
SfcI	CTRYAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	512
SsiI	CCGC	1 cut(s)	841
SspMI	CTAG	4 cut(s)	21, 39, 105, 153
StyD4I	CCNGG	4 cut(s)	10, 354, 457, 472
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	6 cut(s)	134, 560, 674, 754, 775, 859
TaiI	ACGT	3 cut(s)	319, 733, 768
TatI	WGTACW	1 cut(s)	101
TscAI	CASTG	2 cut(s)	554, 595
TseFI	GTSAC	2 cut(s)	715, 835
Tsp45I	GTSAC	2 cut(s)	715, 835
TspDTI	ATGAA	2 cut(s)	345, 818
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	554, 595
XceI	RCATGY	1 cut(s)	612
XspI	CTAG	4 cut(s)	21, 39, 105, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.