FvH4_2g00670

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003458
Physical Location & Seq
Reverse (-)
703609 .. 705918
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00670.t1

Sequence Viewer

Length: 897 bp
ATGGCGTGCTTTCTTATACCTCCATGTCTCTCGCTTTTTTACGCTATCGAGGAGTTAAAGAATGAATGGCCCCTGGTGGAGTCGGCCTTCCAAAAGCATGGCATGTCATGCAAACTCAATCTGGATGAGGGTACCCTAACAGTCGCAACAACCCCAATGACCAGGGGTGCAGATATCATCAACAAGACTATGGACCTCCTTGTTCTTTTGGCTTTGCTTCCTGTTCCACCATCAGCGGCTGTCGACATACTGAGTGGCAAGCGGCTTTATGACATCATCTGGACTTGCGATTCTAATGGTGGTCTTGCCTCTCAACTTCCCTTGCGGAGTCGGATGCGTTATTTTTCACGGATGAGAAAGCTTCGCCGCAGCATCAAGGACCTTATGTGTCTAACTGGTTGCCCCATCTTCTATAATCTGGGAATTTGTGTCGCTCTCTTTGGCCATCAACCTCGATCATTAGTGCTGGTCAGGAACGTTGTGTCATCCTGCATTTTTTACAATCAAGATCCTGCAACTATTATCAGGTTGAAAACCTTGGGTCGTCAAAGGAACGCACAGTCGACAGTCAATCTTGAGATGGACGCTTATGGGTTTGAAACTGCTCCCGGAGTAGATATTACATTCTGTATTGCCAACTACATGTCCAAGGCACCAGTACTTGAACACCAAAAGTTGGAGCGTGTGAAGAAGAAGTATCTATTTGGCCCTTCGGTGAACAAAGATGGAATGTTTGTGTGTGGTTCATACTTCCTTAAAAAGCGAGAACAAGATGTTGTAGAAGCTTGGCCAATGTTAAAATCGGTTTTAGAAGAGTATGGCATTACTTGCACGATGTATCAGGTATGCCCACAATGCATGAGAACTATTATGTTTGATCATTTTAATATGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.8

Weight (kDa)

8.73

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 17 - 72 8.7e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 131
AccB1I GGYRCC 2 cut(s) 131, 652
AccB7I CCANNNNNTGG 1 cut(s) 676
AccI GTMKAC 2 cut(s) 243, 563
AciI CCGC 4 cut(s) 236, 262, 325, 367
AclI AACGTT 1 cut(s) 477
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 2 cut(s) 442, 788
AcsI RAATTY 1 cut(s) 423
AfaI GTAC 2 cut(s) 133, 660
AfiI CCNNNNNNNGG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 3 cut(s) 532, 599, 665
AjnI CCWGG 2 cut(s) 72, 161
AluBI AGCT 2 cut(s) 361, 785
AluI AGCT 2 cut(s) 361, 785
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 503
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 5 cut(s) 68, 84, 442, 706, 788
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 423
Asp718I GGTACC 1 cut(s) 131
AspS9I GGNCC 4 cut(s) 69, 193, 379, 707
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 1 cut(s) 727
AvaII GGWCC 2 cut(s) 193, 379
BalI TGGCCA 2 cut(s) 444, 790
BanI GGYRCC 2 cut(s) 131, 652
BbvI GCAGC 1 cut(s) 381
BccI CCATC 5 cut(s) 238, 413, 453, 574, 719
BciT130I CCWGG 2 cut(s) 74, 163
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 4 cut(s) 237, 263, 367, 370
BlsI GCNGC 4 cut(s) 238, 264, 368, 371
BmcAI AGTACT 1 cut(s) 660
Bme1390I CCNGG 3 cut(s) 74, 163, 609
Bme18I GGWCC 2 cut(s) 193, 379
BmgT120I GGNCC 4 cut(s) 69, 193, 379, 707
BmiI GGNNCC 3 cut(s) 71, 133, 654
BmrFI CCNGG 3 cut(s) 74, 163, 609
BmsI GCATC 2 cut(s) 324, 381
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 609
BsaJI CCNNGG 4 cut(s) 72, 162, 537, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse1I ACTGG 2 cut(s) 400, 656
BseBI CCWGG 2 cut(s) 74, 163
BseDI CCNNGG 4 cut(s) 72, 162, 537, 648
BseGI GGATG 4 cut(s) 130, 339, 357, 485
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 400, 656
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 5 cut(s) 70, 86, 444, 708, 790
BshNI GGYRCC 2 cut(s) 131, 652
BsiSI CCGG 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 5 cut(s) 70, 86, 444, 708, 790
Bsp143I GATC 3 cut(s) 455, 508, 877
BspACI CCGC 4 cut(s) 236, 262, 325, 367
BspANI GGCC 5 cut(s) 70, 86, 444, 708, 790
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 71, 133, 654
BspPI GGATC 1 cut(s) 503
BspT107I GGYRCC 2 cut(s) 131, 652
BsrI ACTGG 2 cut(s) 400, 656
BssECI CCNNGG 4 cut(s) 72, 162, 537, 648
BssMI GATC 3 cut(s) 455, 508, 877
BssT1I CCWWGG 2 cut(s) 537, 648
Bst2UI CCWGG 2 cut(s) 74, 163
Bst4CI ACNGT 3 cut(s) 142, 561, 568
Bst6I CTCTTC 1 cut(s) 807
BstAPI GCANNNNNTGC 2 cut(s) 108, 828
BstC8I GCNNGC 2 cut(s) 7, 260
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 4 cut(s) 130, 339, 357, 485
BstKTI GATC 3 cut(s) 458, 511, 880
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 455, 508, 877
BstMWI GCNNNNNNNGC 3 cut(s) 108, 828, 855
BstNI CCWGG 2 cut(s) 74, 163
BstNSI RCATGY 2 cut(s) 106, 646
BstSCI CCNGG 3 cut(s) 72, 161, 607
BstV1I GCAGC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 5 cut(s) 70, 86, 444, 708, 790
BtsCI GGATG 4 cut(s) 130, 339, 357, 485
Cac8I GCNNGC 2 cut(s) 7, 260
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 4 cut(s) 69, 193, 379, 707
CseI GACGC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 132, 659
CviAII CATG 6 cut(s) 24, 98, 103, 108, 643, 859
CviQI GTAC 2 cut(s) 132, 659
DdeI CTNAG 1 cut(s) 251
DpnI GATC 3 cut(s) 457, 510, 879
DpnII GATC 3 cut(s) 455, 508, 877
EaeI YGGCCR 2 cut(s) 442, 788
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
Eco130I CCWWGG 2 cut(s) 537, 648
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 193, 379
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 72, 161
EcoRV GATATC 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 537, 648
EcoT22I ATGCAT 1 cut(s) 860
ErhI CCWWGG 2 cut(s) 537, 648
FaeI CATG 6 cut(s) 27, 101, 106, 111, 646, 862
FatI CATG 6 cut(s) 23, 97, 102, 107, 642, 858
FbaI TGATCA 1 cut(s) 877
FblI GTMKAC 2 cut(s) 243, 563
Fnu4HI GCNGC 4 cut(s) 237, 263, 367, 370
FokI GGATG 4 cut(s) 137, 346, 364, 472
Fsp4HI GCNGC 4 cut(s) 237, 263, 367, 370
GluI GCNGC 4 cut(s) 237, 263, 367, 370
HaeIII GGCC 5 cut(s) 70, 86, 444, 708, 790
HapII CCGG 1 cut(s) 609
HgaI GACGC 1 cut(s) 593
Hin1II CATG 6 cut(s) 27, 101, 106, 111, 646, 862
HincII GTYRAC 2 cut(s) 244, 564
HindII GTYRAC 2 cut(s) 244, 564
HindIII AAGCTT 2 cut(s) 359, 783
HinfI GANTC 3 cut(s) 80, 290, 328
HpaII CCGG 1 cut(s) 609
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 3 cut(s) 244, 564, 718
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 5 cut(s) 122, 280, 472, 506, 575
Hpy8I GTNNAC 3 cut(s) 244, 564, 718
HpyAV CCTTC 2 cut(s) 97, 720
HpyCH4III ACNGT 3 cut(s) 142, 561, 568
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 6 cut(s) 111, 170, 492, 515, 831, 858
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 828, 855
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 6 cut(s) 27, 101, 106, 111, 646, 862
KpnI GGTACC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 3 cut(s) 455, 508, 877
LmnI GCTCC 2 cut(s) 610, 679
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 2 cut(s) 324, 381
MaeII ACGT 1 cut(s) 477
MalI GATC 3 cut(s) 457, 510, 879
MboI GATC 3 cut(s) 455, 508, 877
MboII GAAGA 4 cut(s) 400, 700, 703, 824
MflI RGATCY 1 cut(s) 508
MlsI TGGCCA 2 cut(s) 444, 790
MluCI AATT 1 cut(s) 423
MluNI TGGCCA 2 cut(s) 444, 790
MlyI GAGTC 2 cut(s) 89, 337
MmeI TCCRAC 2 cut(s) 311, 657
MnlI CCTC 6 cut(s) 30, 43, 121, 206, 319, 462
Mox20I TGGCCA 2 cut(s) 444, 790
Mph1103I ATGCAT 1 cut(s) 860
MscI TGGCCA 2 cut(s) 444, 790
MseI TTAA 4 cut(s) 56, 756, 797, 885
Msp20I TGGCCA 2 cut(s) 444, 790
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 3 cut(s) 74, 163, 609
MvaI CCWGG 2 cut(s) 74, 163
MwoI GCNNNNNNNGC 3 cut(s) 108, 828, 855
NciI CCSGG 1 cut(s) 609
NdeII GATC 3 cut(s) 455, 508, 877
NlaIII CATG 6 cut(s) 27, 101, 106, 111, 646, 862
NlaIV GGNNCC 3 cut(s) 71, 133, 654
NsiI ATGCAT 1 cut(s) 860
NspI RCATGY 2 cut(s) 106, 646
PciI ACATGT 1 cut(s) 642
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 676
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 4 cut(s) 238, 264, 368, 371
PleI GAGTC 2 cut(s) 88, 336
PpsI GAGTC 2 cut(s) 88, 336
PpuMI RGGWCCY 1 cut(s) 379
PscI ACATGT 1 cut(s) 642
Psp1406I AACGTT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 72, 161
PspGI CCWGG 2 cut(s) 72, 161
PspN4I GGNNCC 3 cut(s) 71, 133, 654
PspPI GGNCC 4 cut(s) 69, 193, 379, 707
PspPPI RGGWCCY 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 2 cut(s) 133, 660
RsaNI GTAC 2 cut(s) 132, 659
SalI GTCGAC 2 cut(s) 242, 562
SaqAI TTAA 4 cut(s) 56, 756, 797, 885
SatI GCNGC 4 cut(s) 237, 263, 367, 370
Sau3AI GATC 3 cut(s) 455, 508, 877
Sau96I GGNCC 4 cut(s) 69, 193, 379, 707
ScaI AGTACT 1 cut(s) 660
SchI GAGTC 2 cut(s) 89, 337
ScrFI CCNGG 3 cut(s) 74, 163, 609
SfaNI GCATC 2 cut(s) 324, 381
SinI GGWCC 2 cut(s) 193, 379
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 1 cut(s) 423
SsiI CCGC 4 cut(s) 236, 262, 325, 367
StyD4I CCNGG 3 cut(s) 72, 161, 607
StyI CCWWGG 2 cut(s) 537, 648
TaaI ACNGT 3 cut(s) 142, 561, 568
TaiI ACGT 1 cut(s) 480
TaqI TCGA 4 cut(s) 48, 243, 454, 563
TasI AATT 1 cut(s) 423
TatI WGTACW 1 cut(s) 658
TauI GCSGC 3 cut(s) 239, 265, 369
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 56, 756, 797, 885
Tru9I TTAA 4 cut(s) 56, 756, 797, 885
TseI GCWGC 1 cut(s) 369
TspDTI ATGAA 2 cut(s) 78, 735
TspGWI ACGGA 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 676
VpaK11BI GGWCC 2 cut(s) 193, 379
XapI RAATTY 1 cut(s) 423
XceI RCATGY 2 cut(s) 106, 646
XmiI GTMKAC 2 cut(s) 243, 563
ZrmI AGTACT 1 cut(s) 660
Zsp2I ATGCAT 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.