Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Reverse (-)

8807556 .. 8811532

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTCTGTGCAGCAAAACTGGTGCAAGAAGCCTTGGCCAATGGTGGAATATCTTCCTTAGAAAAGTATTGCATTTCGTGCACACTTGATCAAGCCATACAAATACTGGATGGTCTGCAATATGACATCATCCGGACGGGGTATCACAATGGTGGGTTTCGCTCAAGACTACCACTTGAGGAGCAGGAGAAATATCTTGGACGGCAGAAAAGAATTGAACACTCCTTACAGGGGAGTTCTGTCACTGCTTTGGGAACTTCACTTAATGGATTAAAGTTTGTCAGAGACGTTGTGGAAGCCTGCATTGTAAGAAATGTGAAGCCTGCAACTCTGTTCAGGTTGATGAACTTTAGTCATCAATTGGGTGGAGAGTCGGACAATCTTGAGATGGATGTATTAGGGTTTGAAACAGTAACGAAAAGAAAACGGACGGAGGAGAAGAGAAAGAATGATGTTCATGTTGTCATCATGTCCGAGCCAACAGCAGCTGCGATGGAGGGGCAGCATGGAGAATCGTCGGATCCATTGGACAAAGCCCTGTTCAGCCCTTCGTTGAACAAAGCTGGCATGCTCGTCTGTGGTGCCTTCTTCTCTGAAAAGCGAGCCAAAGTATTGGAAGAAGAACGGCCCATTGTGGAATCATCCTTGGAACAGTATGGCATTTCATGCACAATTTATCTGGTATGCACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.63

Weight (kDa)

5.82

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	581
AccIII	TCCGGA	1 cut(s)	132
AclWI	GGATC	2 cut(s)	515, 528
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	218, 407, 556
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	488, 563
AluI	AGCT	2 cut(s)	488, 563
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	279
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	515, 528
AlwNI	CAGNNNCTG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	2 cut(s)	36, 626
ApaLI	GTGCAC	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	11, 485, 488, 502
Asp700I	GAANNNNTTC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	627
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	23, 475, 497, 514
BccI	CCATC	3 cut(s)	104, 382, 487
BceAI	ACGGC	2 cut(s)	218, 641
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	279
BisI	GCNGC	4 cut(s)	12, 486, 489, 503
BlsI	GCNGC	4 cut(s)	13, 487, 490, 504
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	522, 583
BpuEI	CTTGAG	3 cut(s)	148, 197, 404
BsaJI	CCNNGG	2 cut(s)	33, 645
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	24, 111
BseAI	TCCGGA	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	33, 645
BseGI	GGATG	4 cut(s)	115, 129, 397, 641
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	24, 111
BseRI	GAGGAG	2 cut(s)	194, 449
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	23, 475, 497, 514
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	38, 628
BshNI	GGYRCC	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	279
BsmBI	CGTCTC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	38, 628
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	88, 520
BspANI	GGCC	2 cut(s)	38, 628
BspEI	TCCGGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	522, 583
BspPI	GGATC	2 cut(s)	515, 528
BspT107I	GGYRCC	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	24, 111
BssECI	CCNNGG	2 cut(s)	33, 645
BssMI	GATC	2 cut(s)	88, 520
BssT1I	CCWWGG	2 cut(s)	33, 645
Bst4CI	ACNGT	2 cut(s)	412, 654
Bst6I	CTCTTC	1 cut(s)	434
BstAPI	GCANNNNNTGC	2 cut(s)	78, 666
BstC8I	GCNNGC	5 cut(s)	301, 324, 565, 569, 603
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	4 cut(s)	115, 129, 397, 641
BstKTI	GATC	2 cut(s)	91, 523
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	88, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 666
BstNSI	RCATGY	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	4 cut(s)	23, 475, 497, 514
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	38, 628
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	115, 129, 397, 641
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	5 cut(s)	301, 324, 565, 569, 603
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	627
CviAII	CATG	5 cut(s)	458, 469, 506, 568, 666
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	2 cut(s)	90, 522
DpnII	GATC	2 cut(s)	88, 520
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	33, 645
EcoT14I	CCWWGG	2 cut(s)	33, 645
ErhI	CCWWGG	2 cut(s)	33, 645
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	5 cut(s)	461, 472, 509, 571, 669
FaiI	YATR	9 cut(s)	98, 123, 459, 470, 507, 569, 657, 667, 685
FatI	CATG	5 cut(s)	457, 468, 505, 567, 665
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	12, 486, 489, 503
FokI	GGATG	4 cut(s)	116, 122, 404, 628
Fsp4HI	GCNGC	4 cut(s)	12, 486, 489, 503
GluI	GCNGC	4 cut(s)	12, 486, 489, 503
HaeIII	GGCC	2 cut(s)	38, 628
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	5 cut(s)	461, 472, 509, 571, 669
HinfI	GANTC	3 cut(s)	371, 512, 638
HpaII	CCGG	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	5 cut(s)	284, 376, 475, 520, 595
Hpy188III	TCNNGA	3 cut(s)	133, 165, 383
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	558, 595
HpyCH4III	ACNGT	2 cut(s)	412, 654
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	9 cut(s)	11, 25, 72, 81, 118, 303, 326, 669, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 666
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	461, 472, 509, 571, 669
Kpn2I	TCCGGA	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 520
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	4 cut(s)	23, 475, 497, 514
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	241, 412
MalI	GATC	2 cut(s)	90, 522
MboI	GATC	2 cut(s)	88, 520
MboII	GAAGA	5 cut(s)	45, 451, 580, 629, 632
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	3 cut(s)	213, 359, 672
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	354, 498
MnlI	CCTC	3 cut(s)	172, 427, 490
Mox20I	TGGCCA	1 cut(s)	38
MroI	TCCGGA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	52
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	264, 272
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	78, 666
NdeII	GATC	2 cut(s)	88, 520
NlaIII	CATG	5 cut(s)	461, 472, 509, 571, 669
NlaIV	GGNNCC	2 cut(s)	522, 583
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	571
OliI	CACNNNNGTG	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	512, 638
PkrI	GCNGC	4 cut(s)	13, 487, 490, 504
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	522, 583
PspPI	GGNCC	1 cut(s)	627
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	264, 272
SatI	GCNGC	4 cut(s)	12, 486, 489, 503
Sau3AI	GATC	2 cut(s)	88, 520
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	4 cut(s)	291, 341, 490, 565
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	163, 176, 383
SmoI	CTYRAG	3 cut(s)	163, 176, 383
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	3 cut(s)	213, 359, 672
StyI	CCWWGG	2 cut(s)	33, 645
TaaI	ACNGT	2 cut(s)	412, 654
TaiI	ACGT	1 cut(s)	291
TasI	AATT	3 cut(s)	213, 359, 672
TfiI	GAWTC	2 cut(s)	512, 638
Tru1I	TTAA	2 cut(s)	264, 272
Tru9I	TTAA	2 cut(s)	264, 272
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	11, 485, 488, 502
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	359, 446, 654
TspGWI	ACGGA	2 cut(s)	442, 446
TspRI	CASTG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	79
XceI	RCATGY	1 cut(s)	571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.