Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

56309723 .. 56312086

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGACATGGTCATATCCCGCCGTTCGTTCTCCGACGACATCGTTCCGGGCACTAAGGATATGCAGAAATCAGATTCTGGGTCATCAGATTCCCTTGATAGCTTATTTGGTGACAAAGATGCAATCAGTGCTCTGGAGGAAGCACCTGCTATAGTCAAGTCCTACTATGACAAAAGAATAGTTGGATGCCTTGGTGATGAAGGAGGTAAACTCCTCCAGCTGCATCTTTTTCTTCCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042773 GO:0042775 GO:0042776 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046907 GO:0046914 GO:0050897 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

80

Amino Acids

8.67

Weight (kDa)

4.55

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AciI	CCGC	1 cut(s)	19
AluBI	AGCT	2 cut(s)	102, 220
AluI	AGCT	2 cut(s)	102, 220
Alw21I	GWGCWC	1 cut(s)	133
AlwNI	CAGNNNCTG	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	122, 206
BaeGI	GKGCMC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	109, 176, 232
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	2 cut(s)	155, 200
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	191, 236
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	53, 133
BspACI	CCGC	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	191, 236
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	191, 236
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	77
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	2 cut(s)	102, 220
CviKI_1	RGCY	2 cut(s)	102, 220
DdeI	CTNAG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	10
FaiI	YATR	5 cut(s)	8, 14, 62, 152, 168
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	2 cut(s)	198, 223
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	2 cut(s)	155, 200
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	1 cut(s)	10
HinfI	GANTC	2 cut(s)	74, 89
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	122, 206
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	34, 73, 88
Hpy188III	TCNNGA	2 cut(s)	134, 240
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	64, 122, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	60, 63, 119, 159, 230
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	3 cut(s)	109, 176, 232
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	53, 133
MmeI	TCCRAC	2 cut(s)	57, 163
MnlI	CCTC	3 cut(s)	130, 197, 224
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	48
NlaIII	CATG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	74, 89
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	220
SatI	GCNGC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	53, 133
SetI	ASST	4 cut(s)	104, 148, 208, 222
SfaNI	GCATC	3 cut(s)	109, 176, 232
SfcI	CTRYAG	1 cut(s)	150
SsiI	CCGC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	74, 89
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.