Rroxscaffold_3G00264100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003458
Physical Location & Seq
Forward (+)
57855414 .. 57857769
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264100.1

Sequence Viewer

Length: 513 bp
ATGGAAAGCGAGAAGCCGTGGCCTGAAGAGGACAGGGTTTCTTTCAACTTGGTCTTGAAGAGAAAGCGAGGGTCTCATTTGAAAGCACCAGCAACAGAACCAGCGACGCTGGAGAAGGAGCAGCAGGACGGTGTAGCGAAGGCCATACAAATACTGGATGGTCTGCAATATGACATCATCCGGACGGGGTATCACAATGGTGGGTTTCGCTCAAGACTACCACTTGAGGAGCAGGAGAAATATCTTGGACGGCAGAAAAGAATTGAACACTCCTTACAGGAACTTGCAAACCAGTCACAGTGTGATGTATTTCTTAATGTAAGGAATATTGTTTCGTTTCATATGATTCGTAGTGATATTGTGTTGATGAACTTTAGTCGTCAATTGGGTGGACAGTCGGACAATCTTGAGATGGATGTATTAGAAGCCAAACTAACTGGTATGCCTGGTGCTGCAGAAAGGACTGACCATCTCGTTATGTTGGTTTCACAGGACTATTATGCCCCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.41

Weight (kDa)

5.75

Isoelectric Point (pI)

70.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 302
AgsI TTSAA 4 cut(s) 46, 58, 82, 266
AjnI CCWGG 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 78
Aor13HI TCCGGA 1 cut(s) 180
AoxI GGCC 2 cut(s) 20, 141
ApeKI GCWGC 2 cut(s) 121, 452
BbvI GCAGC 2 cut(s) 133, 439
BccI CCATC 3 cut(s) 152, 406, 477
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 2 cut(s) 122, 453
BlsI GCNGC 2 cut(s) 123, 454
Bme1390I CCNGG 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 3 cut(s) 196, 245, 428
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 180
Bse1I ACTGG 3 cut(s) 159, 292, 442
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 3 cut(s) 163, 177, 421
BseNI ACTGG 3 cut(s) 159, 292, 442
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 133, 439
BshFI GGCC 2 cut(s) 22, 143
BsiSI CCGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 22, 143
Bso31I GGTCTC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 180
BspANI GGCC 2 cut(s) 22, 143
BspEI TCCGGA 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 78
BsrI ACTGG 3 cut(s) 159, 292, 442
BssECI CCNNGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 131, 300, 396
Bst6I CTCTTC 2 cut(s) 21, 53
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 3 cut(s) 163, 177, 421
BstMAI GTCTC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 133, 439
BsuRI GGCC 2 cut(s) 22, 143
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 163, 177, 421
BtsIMutI CAGTG 1 cut(s) 305
CseI GACGC 1 cut(s) 115
CviJI RGCY 4 cut(s) 16, 22, 143, 428
CviKI_1 RGCY 4 cut(s) 16, 22, 143, 428
DraIII CACNNNGTG 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 21, 53
EarI CTCTTC 2 cut(s) 21, 53
Eco31I GGTCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 445
FaiI YATR 7 cut(s) 146, 171, 342, 344, 443, 479, 501
FauNDI CATATG 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 122, 453
FokI GGATG 3 cut(s) 164, 170, 428
Fsp4HI GCNGC 2 cut(s) 122, 453
GluI GCNGC 2 cut(s) 122, 453
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 2 cut(s) 22, 143
HapII CCGG 1 cut(s) 181
HgaI GACGC 1 cut(s) 115
HinfI GANTC 1 cut(s) 346
HpaII CCGG 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 4 cut(s) 55, 181, 213, 407
Hpy8I GTNNAC 1 cut(s) 392
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 109, 133
HpyCH4III ACNGT 3 cut(s) 131, 300, 396
HpyCH4V TGCA 3 cut(s) 166, 287, 455
Kpn2I TCCGGA 1 cut(s) 180
LmnI GCTCC 2 cut(s) 118, 229
Lsp1109I GCAGC 2 cut(s) 133, 439
MaeIII GTNAC 1 cut(s) 294
MboII GAAGA 2 cut(s) 38, 70
MfeI CAATTG 1 cut(s) 383
MluCI AATT 2 cut(s) 261, 383
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 3 cut(s) 22, 62, 220
MroI TCCGGA 1 cut(s) 180
MseI TTAA 2 cut(s) 315, 511
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 294
OliI CACNNNNGTG 1 cut(s) 198
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 123, 454
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PsrI GAACNNNNNNTAC 2 cut(s) 258, 290
PstI CTGCAG 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 315, 511
SatI GCNGC 2 cut(s) 122, 453
ScrFI CCNGG 1 cut(s) 447
SetI ASST 1 cut(s) 511
SfcI CTRYAG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 3 cut(s) 211, 224, 407
SmoI CTYRAG 3 cut(s) 211, 224, 407
Sse9I AATT 2 cut(s) 261, 383
SspI AATATT 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 3 cut(s) 131, 300, 396
TasI AATT 2 cut(s) 261, 383
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 315, 511
Tru9I TTAA 2 cut(s) 315, 511
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 2 cut(s) 121, 452
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 329, 383
TspRI CASTG 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.