RLG00000005327

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003458
Physical Location & Seq
Reverse (-)
66819481 .. 66823959
4479 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005327

Sequence Viewer

Length: 885 bp
ATGGAGATCTGCGGCGACAAATGGAAGTCGTCGGACGATATGAAGGCGGTGTTGTCCCGTCCGTCACTCGCATCACGCTTTTCGTTTGGCGAAAGAGTTCCGTGGTGGCTGCACGCAACGACCTTTTCGCCGAGAAAAATAACAACAGAAGGGGCGGCGATGGAGTCGAAGCCGCCGTTGAACAAGGATGGCATGGTTGCTTACACCTCCTTCTCTTCCATGTTTTATACTGGACGAGAAAAAGTGTTGGCAGAAGAATGGCCCATGGTGGAGTCGGCCTTGGGAGAGTATGGCATGTCATGCAAACTCGATTGGGATGAGAGGTTCATAACAGTGGCAACGACGACAAGGACTAGGGGTGCAGATATTGTTTACAAGGCTAGGGACCTCCTTCATCTTCTGGCATTGACTAATGTTCCACCATCAATGGGGCAATATTTTACACGGATGAAAAATATTCAGCGCAACGTGGATGTAGCATCCTCTCTCTGTCTTATTTTTTTTGATCTGATCTGTTTATATTTTCTTGAAGAAGCCGTTCTAGAAGCTTGGCCACTGTTGAAGTCGCTTTTAGAAGATTATGGCATTTCATGTACAATGTATCTGGCTGAGCGTTTCATGACATTATCAACAACCAGCGGGACTGAAGATCCAGATATTATTTACAAGGCTAGGGATGTTCTTGAACTTTTGTCATTAACTCGTGTTCCACCATCAATGATGCTATTAGGATTTAGTGAAACAGGATTTTGCTGTTCTAATCTCTGGTGTCATGTGCAGAAGCTAATTAAGAAGCGGCGTCGACTACTTCGGCCCTACTTAAAGGGTATTAACTTGTGTAATCGAGATGCCCTAGAAGGAGGAACGAACTTTAAGCCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.57

Weight (kDa)

8.01

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 70 - 135 8.8e-11 Krr1 KH1 domain
KH_KRR1_1st PF17903 175 - 232 1.4e-10 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 802
AciI CCGC 6 cut(s) 12, 47, 155, 173, 639, 796
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 666
AcyI GRCGYC 1 cut(s) 799
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 4 cut(s) 181, 530, 562, 686
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 2 cut(s) 548, 784
AluI AGCT 2 cut(s) 548, 784
AlwI GGATC 1 cut(s) 644
AoxI GGCC 4 cut(s) 260, 276, 551, 812
ApeKI GCWGC 1 cut(s) 109
Asp700I GAANNNNTTC 2 cut(s) 96, 537
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 261, 385, 813
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 553
BauI CACGAG 1 cut(s) 702
BbvI GCAGC 1 cut(s) 96
BccI CCATC 4 cut(s) 154, 182, 430, 721
BceAI ACGGC 2 cut(s) 160, 521
BfaI CTAG 5 cut(s) 354, 381, 542, 672, 854
BglII AGATCT 1 cut(s) 6
BisI GCNGC 5 cut(s) 13, 110, 156, 173, 797
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 5 cut(s) 14, 111, 157, 174, 798
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 261, 385, 813
BmiI GGNNCC 1 cut(s) 386
BmsI GCATC 4 cut(s) 80, 488, 711, 838
Bpu1102I GCTNAGC 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 799
BsaJI CCNNGG 4 cut(s) 101, 264, 279, 878
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 235
BseDI CCNNGG 4 cut(s) 101, 264, 279, 878
BseGI GGATG 6 cut(s) 193, 322, 453, 478, 479, 682
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 96
BsgI GTGCAG 3 cut(s) 95, 381, 797
BshFI GGCC 4 cut(s) 262, 278, 553, 814
BslFI GGGAC 3 cut(s) 40, 398, 655
BslI CCNNNNNNNGG 1 cut(s) 428
BsmFI GGGAC 3 cut(s) 40, 398, 655
BsnI GGCC 4 cut(s) 262, 278, 553, 814
Bsp1407I TGTACA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 6, 505, 510, 649
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp19I CCATGG 2 cut(s) 264, 878
BspACI CCGC 6 cut(s) 12, 47, 155, 173, 639, 796
BspANI GGCC 4 cut(s) 262, 278, 553, 814
BspCNI CTCAG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 1 cut(s) 386
BspPI GGATC 1 cut(s) 644
BsrGI TGTACA 1 cut(s) 593
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 4 cut(s) 101, 264, 279, 878
BssMI GATC 4 cut(s) 6, 505, 510, 649
BssNI GRCGYC 1 cut(s) 799
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 3 cut(s) 264, 279, 878
Bst2BI CACGAG 1 cut(s) 702
Bst4CI ACNGT 2 cut(s) 334, 558
Bst6I CTCTTC 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 799
BstAPI GCANNNNNTGC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 3 cut(s) 101, 264, 878
BstF5I GGATG 6 cut(s) 193, 322, 453, 478, 479, 682
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 4 cut(s) 9, 508, 513, 652
BstMBI GATC 4 cut(s) 6, 505, 510, 649
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 6, 649
BstYI RGATCY 2 cut(s) 6, 649
BsuRI GGCC 4 cut(s) 262, 278, 553, 814
BtgI CCRYGG 3 cut(s) 101, 264, 878
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 6 cut(s) 193, 322, 453, 478, 479, 682
BtsIMutI CAGTG 2 cut(s) 339, 554
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 618
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 261, 385, 813
CseI GACGC 1 cut(s) 788
Csp6I GTAC 1 cut(s) 594
CviAII CATG 9 cut(s) 193, 220, 265, 295, 300, 591, 619, 773, 879
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 1 cut(s) 609
DpnI GATC 4 cut(s) 8, 507, 512, 651
DpnII GATC 4 cut(s) 6, 505, 510, 649
EaeI YGGCCR 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco130I CCWWGG 3 cut(s) 264, 279, 878
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 385
EcoT14I CCWWGG 3 cut(s) 264, 279, 878
ErhI CCWWGG 3 cut(s) 264, 279, 878
FaeI CATG 9 cut(s) 196, 223, 268, 298, 303, 594, 622, 776, 882
FaqI GGGAC 3 cut(s) 40, 398, 655
FatI CATG 9 cut(s) 192, 219, 264, 294, 299, 590, 618, 772, 878
FauI CCCGC 1 cut(s) 632
FblI GTMKAC 1 cut(s) 802
Fnu4HI GCNGC 5 cut(s) 13, 110, 156, 173, 797
FokI GGATG 6 cut(s) 200, 329, 460, 466, 485, 689
Fsp4HI GCNGC 5 cut(s) 13, 110, 156, 173, 797
FspBI CTAG 5 cut(s) 354, 381, 542, 672, 854
GlaI GCGC 1 cut(s) 464
GluI GCNGC 5 cut(s) 13, 110, 156, 173, 797
HaeIII GGCC 4 cut(s) 262, 278, 553, 814
HgaI GACGC 1 cut(s) 788
HhaI GCGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 799
Hin1II CATG 9 cut(s) 196, 223, 268, 298, 303, 594, 622, 776, 882
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 803
HindII GTYRAC 1 cut(s) 803
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 2 cut(s) 164, 272
Hpy166II GTNNAC 2 cut(s) 373, 803
Hpy188I TCNGA 2 cut(s) 34, 510
Hpy188III TCNNGA 6 cut(s) 527, 542, 619, 653, 683, 845
Hpy8I GTNNAC 2 cut(s) 373, 803
Hpy99I CGWCG 3 cut(s) 34, 346, 804
HpyAV CCTTC 5 cut(s) 37, 143, 220, 401, 851
HpyCH4III ACNGT 2 cut(s) 334, 558
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 4 cut(s) 112, 303, 362, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 799
Hsp92II CATG 9 cut(s) 196, 223, 268, 298, 303, 594, 622, 776, 882
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 4 cut(s) 6, 505, 510, 649
LpnPI CCDG 7 cut(s) 216, 386, 590, 649, 666, 729, 751
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 4 cut(s) 80, 488, 711, 838
MaeI CTAG 5 cut(s) 354, 381, 542, 672, 854
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 63
MalI GATC 4 cut(s) 8, 507, 512, 651
MboI GATC 4 cut(s) 6, 505, 510, 649
MboII GAAGA 6 cut(s) 207, 266, 389, 542, 587, 659
MflI RGATCY 2 cut(s) 6, 649
MlsI TGGCCA 1 cut(s) 553
MluCI AATT 1 cut(s) 786
MluNI TGGCCA 1 cut(s) 553
MlyI GAGTC 2 cut(s) 173, 281
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 5 cut(s) 217, 315, 398, 493, 854
Mox20I TGGCCA 1 cut(s) 553
MroXI GAANNNNTTC 2 cut(s) 96, 537
MscI TGGCCA 1 cut(s) 553
MseI TTAA 5 cut(s) 698, 789, 821, 831, 873
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 553
MspA1I CMGCKG 1 cut(s) 639
MwoI GCNNNNNNNGC 1 cut(s) 300
NcoI CCATGG 2 cut(s) 264, 878
NdeII GATC 4 cut(s) 6, 505, 510, 649
NlaIII CATG 9 cut(s) 196, 223, 268, 298, 303, 594, 622, 776, 882
NlaIV GGNNCC 1 cut(s) 386
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 63
NspI RCATGY 1 cut(s) 298
PagI TCATGA 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 96, 537
PkrI GCNGC 5 cut(s) 14, 111, 157, 174, 798
PleI GAGTC 2 cut(s) 172, 280
PpsI GAGTC 2 cut(s) 172, 280
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 3 cut(s) 261, 385, 813
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 2 cut(s) 6, 649
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 1 cut(s) 332
SalI GTCGAC 1 cut(s) 801
SaqAI TTAA 5 cut(s) 698, 789, 821, 831, 873
SatI GCNGC 5 cut(s) 13, 110, 156, 173, 797
Sau3AI GATC 4 cut(s) 6, 505, 510, 649
Sau96I GGNCC 3 cut(s) 261, 385, 813
SchI GAGTC 2 cut(s) 173, 281
SetI ASST 7 cut(s) 125, 209, 326, 390, 471, 550, 786
SfaNI GCATC 4 cut(s) 80, 488, 711, 838
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 1 cut(s) 786
SsiI CCGC 6 cut(s) 12, 47, 155, 173, 639, 796
SspI AATATT 2 cut(s) 437, 457
SspMI CTAG 5 cut(s) 354, 381, 542, 672, 854
StyI CCWWGG 3 cut(s) 264, 279, 878
TaaI ACNGT 2 cut(s) 334, 558
TaiI ACGT 1 cut(s) 471
TaqI TCGA 4 cut(s) 167, 309, 802, 844
TasI AATT 1 cut(s) 786
TatI WGTACW 1 cut(s) 593
TauI GCSGC 4 cut(s) 15, 158, 175, 799
Tru1I TTAA 5 cut(s) 698, 789, 821, 831, 873
Tru9I TTAA 5 cut(s) 698, 789, 821, 831, 873
TscAI CASTG 2 cut(s) 339, 561
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 6 cut(s) 56, 316, 383, 464, 579, 607
TspGWI ACGGA 3 cut(s) 51, 90, 460
TspRI CASTG 2 cut(s) 339, 561
VpaK11BI GGWCC 1 cut(s) 385
XbaI TCTAGA 1 cut(s) 541
XceI RCATGY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 802
XmnI GAANNNNTTC 2 cut(s) 96, 537
XspI CTAG 5 cut(s) 354, 381, 542, 672, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.