Rw7G002180

rRNA processing

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
1820708 .. 1826389
5682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002180.1

Sequence Viewer

Length: 1617 bp
ATGGAGATCTGCGGCGACAAATGGAAGTCGTCGGACGATACGAAGGCTGTGTTGTCTCGTCCGTCACTCGCATCACGCTTTTCGTTTGGCGAAAGAGTTCCGTGGTGGCTGCACGCAACGACCTTTTCGCCGAGAAAAATAACAACAGAAGGGGCGGCGATGGAGTCGAAGCCGCCGTTGAACAAGGATGGCATGGTTGCTTACACCTCCTTCTCTTCCATGTTTTATCCTGGACGAGCAAAAGTGTTGGCAGAAGAATGGCCCATGGTGGAGTCGGCCTTGGGAGAGTATGGCATGTCATGCAAACTCGATTGGGATGAGAGGTTCATAACAGTGGCAACAACGACAAGGACTAGGGGTGCGGATATTGTTTACAAGGCTAGGGACCTCCTTCATCTTCTGGCATTGACTAATGTTCCACCATCAATGGCCATACAGATACTGGATGGCAGGCTGCATTGTGACATCATCTGGACTGCCAATTGTTACGGTGGTCTTCTCTCTAAACTTTCGTTTAAGAGTAAGGGGCAATATTTTACACGGATGAAAAATATTCGGCGTAACATAGAGGGCCTTGTATCTGTATCCGGTTGCTCCCTCTTCATTAATGGATTTTCTGTCACTGCAATTAGCGCAATTCCTGAAGGACTATTGACGATCAGGAGTATTGTGACAACCTGCATTGTTAAAGGTCAGAATCCTGGAACTGCTGTCAGGTTGTTGAAATTGTTTCAAGAAAGGAATGGACAGACAGAGAATCTCGAGATGGATGCTTATGGGTTCAAAACTGCTCCTGGAGCAAAACTGAGATTCTTGAAGCGATTAGGTGGGAACCCATTAGTTGAACATAAAAATTCGGAGCTTACCCTGACTAGGGGGGATGATGTCGGGGAACTGAAGCCATCCATTGGGAACCCGCGAGTTGAACACAAAAAATCGGAGGATGACCCGACACCAGAAGTCAATCAGACAGAGTTTTCTTTATTTGGCCCTTCGTTGAACAAAGATGGAATGCTTGTGTGTGGTTCGTTCTTCCTTGATCATCGAGAAGAAACCGTTCTAGAAGCTTGGCCACTGTTGAAGTCGCTTTTAGAAGATTATGGCATTTCATGTATAATGTATCTGGCTGAGCGTTTCATGACATTATCAACAACCAGCGGGACTGAAGATCCAGATATTATTTACAAGGCTAGGGATGTTCTTGAACTTTTGTCATTAACTCGTGTTCCACCATCAATGGTAATGAAAGTACTGAATGAGAATCTGCAATATGACATCATCAAGACTGCGTATCGTAATGGTGGTTTTTGCTCACAATATAAGATTGACAGGAAGCTAATTAAGAAGCGGCGTGGACTACTTCGGCCCTACTTAAAGGAACTTGGGGTGCTGACGGGTTGTGAGATATATGTTGATGGATGCGCTGTTACTGCTATGGGTTTTAAGCGTCAAGGATTAAAGTTGGTCAGGATTGGCGTGAAAGAGTGCCTTGTTAACAATGTGAGACCTAAAACTATGCTTCGGAAGATGAAGTTGACCCTTGAAAGGATGAAAATGAAAGAGGAAATTACTGCCGGAGAATTTCCTCCTGTGGAATCTGCTGGGAACATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

538

Amino Acids

60.28

Weight (kDa)

9.05

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 71 - 148 2.3e-10 Krr1 KH1 domain
KH_KRR1_1st PF17903 345 - 407 4.4e-12 Krr1 KH1 domain
KH_KRR1_2nd PF21800 443 - 510 1.7e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 686
AccB7I CCANNNNNTGG 1 cut(s) 908
AccII CGCG 1 cut(s) 919
AciI CCGC 7 cut(s) 12, 155, 173, 362, 917, 1158, 1348
AclWI GGATC 1 cut(s) 1163
AcoI YGGCCR 2 cut(s) 429, 1070
AcsI RAATTY 2 cut(s) 853, 1580
AcuI CTGAAG 3 cut(s) 663, 917, 1185
AfaI GTAC 1 cut(s) 1251
AfiI CCNNNNNNNGG 4 cut(s) 873, 874, 908, 1545
AjnI CCWGG 3 cut(s) 229, 700, 793
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 3 cut(s) 862, 1067, 1336
AluI AGCT 3 cut(s) 862, 1067, 1336
Alw26I GTCTC 2 cut(s) 60, 1498
AlwI GGATC 1 cut(s) 1163
AlwNI CAGNNNCTG 1 cut(s) 442
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 7 cut(s) 260, 276, 429, 571, 988, 1070, 1364
ApeKI GCWGC 2 cut(s) 109, 454
ApoI RAATTY 2 cut(s) 853, 1580
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 2 cut(s) 96, 1056
AspLEI GCGC 2 cut(s) 635, 1424
AspS9I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 2 cut(s) 431, 1072
BauI CACGAG 1 cut(s) 1221
BbsI GAAGAC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 96, 441
BccI CCATC 9 cut(s) 154, 182, 430, 440, 760, 910, 1001, 1240, 1409
BceAI ACGGC 1 cut(s) 160
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 3 cut(s) 231, 702, 795
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 1 cut(s) 1039
BcoDI GTCTC 2 cut(s) 60, 1498
BfaI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
BfuAI ACCTGC 1 cut(s) 686
BfuI GTATCC 1 cut(s) 595
BglII AGATCT 1 cut(s) 6
BisI GCNGC 6 cut(s) 13, 110, 156, 173, 455, 1349
BlpI GCTNAGC 1 cut(s) 1128
BlsI GCNGC 6 cut(s) 14, 111, 157, 174, 456, 1350
BmcAI AGTACT 1 cut(s) 1251
Bme1390I CCNGG 3 cut(s) 231, 702, 795
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
BmiI GGNNCC 3 cut(s) 386, 833, 914
BmrFI CCNGG 3 cut(s) 231, 702, 795
BmsI GCATC 3 cut(s) 80, 760, 1409
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 816
Bpu1102I GCTNAGC 1 cut(s) 1128
BsaI GGTCTC 1 cut(s) 1498
BsaJI CCNNGG 3 cut(s) 101, 264, 279
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 4 cut(s) 873, 874, 908, 1545
Bse1I ACTGG 1 cut(s) 447
BseBI CCWGG 3 cut(s) 231, 702, 795
BseDI CCNNGG 3 cut(s) 101, 264, 279
BseLI CCNNNNNNNGG 4 cut(s) 873, 874, 908, 1545
BseMII CTCAG 2 cut(s) 797, 1119
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 96, 441
BseYI CCCAGC 1 cut(s) 1601
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 919
BshFI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 2 cut(s) 588, 1575
BslFI GGGAC 2 cut(s) 398, 1174
BslI CCNNNNNNNGG 4 cut(s) 873, 874, 908, 1545
BsmAI GTCTC 2 cut(s) 60, 1498
BsmFI GGGAC 2 cut(s) 398, 1174
BsmI GAATGC 1 cut(s) 1017
BsnI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
Bso31I GGTCTC 1 cut(s) 1498
BsoBI CYCGRG 1 cut(s) 761
Bsp143I GATC 4 cut(s) 6, 657, 1039, 1168
Bsp1720I GCTNAGC 1 cut(s) 1128
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 7 cut(s) 12, 155, 173, 362, 917, 1158, 1348
BspANI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
BspCNI CTCAG 2 cut(s) 798, 1120
BspFNI CGCG 1 cut(s) 919
BspHI TCATGA 1 cut(s) 1137
BspLI GGNNCC 3 cut(s) 386, 833, 914
BspMI ACCTGC 1 cut(s) 686
BspPI GGATC 1 cut(s) 1163
BspTNI GGTCTC 1 cut(s) 1498
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 3 cut(s) 101, 264, 279
BssMI GATC 4 cut(s) 6, 657, 1039, 1168
BssSI CACGAG 1 cut(s) 1221
BssT1I CCWWGG 2 cut(s) 264, 279
Bst2BI CACGAG 1 cut(s) 1221
Bst2UI CCWGG 3 cut(s) 231, 702, 795
Bst4CI ACNGT 4 cut(s) 334, 491, 1057, 1077
Bst6I CTCTTC 2 cut(s) 220, 605
BstAPI GCANNNNNTGC 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 114, 452
BstDEI CTNAG 2 cut(s) 806, 1128
BstDSI CCRYGG 2 cut(s) 101, 264
BstFNI CGCG 1 cut(s) 919
BstHHI GCGC 2 cut(s) 635, 1424
BstKTI GATC 4 cut(s) 9, 660, 1042, 1171
BstMAI GTCTC 2 cut(s) 60, 1498
BstMBI GATC 4 cut(s) 6, 657, 1039, 1168
BstMWI GCNNNNNNNGC 4 cut(s) 300, 632, 797, 1430
BstNI CCWGG 3 cut(s) 231, 702, 795
BstNSI RCATGY 2 cut(s) 298, 1612
BstSCI CCNGG 3 cut(s) 229, 700, 793
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 96, 441
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 2 cut(s) 6, 1168
BstYI RGATCY 2 cut(s) 6, 1168
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
BtgI CCRYGG 2 cut(s) 101, 264
BtgZI GCGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 339, 621, 1073
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 114, 452
CaiI CAGNNNCTG 1 cut(s) 442
CciI TCATGA 1 cut(s) 1137
CfoI GCGC 2 cut(s) 635, 1424
Cfr13I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
CseI GACGC 1 cut(s) 1436
Csp6I GTAC 1 cut(s) 1250
CviAII CATG 8 cut(s) 193, 220, 265, 295, 300, 1110, 1138, 1609
CviQI GTAC 1 cut(s) 1250
DdeI CTNAG 2 cut(s) 806, 1128
DpnI GATC 4 cut(s) 8, 659, 1041, 1170
DpnII GATC 4 cut(s) 6, 657, 1039, 1168
EaeI YGGCCR 2 cut(s) 429, 1070
Eam1104I CTCTTC 2 cut(s) 220, 605
EarI CTCTTC 2 cut(s) 220, 605
Eco130I CCWWGG 2 cut(s) 264, 279
Eco31I GGTCTC 1 cut(s) 1498
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 3 cut(s) 663, 917, 1185
Eco88I CYCGRG 1 cut(s) 761
EcoO109I RGGNCCY 2 cut(s) 385, 571
EcoRII CCWGG 3 cut(s) 229, 700, 793
EcoT14I CCWWGG 2 cut(s) 264, 279
EcoT22I ATGCAT 1 cut(s) 1614
ErhI CCWWGG 2 cut(s) 264, 279
FaeI CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1612
FalI AAGNNNNNCTT 2 cut(s) 1473, 1505
FaqI GGGAC 2 cut(s) 398, 1174
FatI CATG 8 cut(s) 192, 219, 264, 294, 299, 1109, 1137, 1608
FauI CCCGC 2 cut(s) 924, 1151
FbaI TGATCA 1 cut(s) 1039
Fnu4HI GCNGC 6 cut(s) 13, 110, 156, 173, 455, 1349
Fsp4HI GCNGC 6 cut(s) 13, 110, 156, 173, 455, 1349
FspBI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
GlaI GCGC 2 cut(s) 634, 1423
GluI GCNGC 6 cut(s) 13, 110, 156, 173, 455, 1349
GsaI CCCAGC 1 cut(s) 1605
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
HapII CCGG 2 cut(s) 588, 1575
HgaI GACGC 1 cut(s) 1436
HhaI GCGC 2 cut(s) 635, 1424
Hin1II CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1612
Hin6I GCGC 2 cut(s) 633, 1422
HinP1I GCGC 2 cut(s) 633, 1422
HincII GTYRAC 2 cut(s) 1495, 1536
HindII GTYRAC 2 cut(s) 1495, 1536
HindIII AAGCTT 1 cut(s) 1065
HinfI GANTC 7 cut(s) 164, 272, 697, 757, 810, 1261, 1595
HpaI GTTAAC 1 cut(s) 1495
HpaII CCGG 2 cut(s) 588, 1575
Hpy166II GTNNAC 4 cut(s) 373, 1355, 1495, 1536
Hpy188I TCNGA 6 cut(s) 34, 696, 859, 940, 969, 1524
Hpy8I GTNNAC 4 cut(s) 373, 1355, 1495, 1536
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 6 cut(s) 37, 143, 220, 401, 638, 1002
HpyCH4III ACNGT 4 cut(s) 334, 491, 1057, 1077
HpyCH4V TGCA 7 cut(s) 112, 303, 457, 626, 681, 1267, 1612
HpyF10VI GCNNNNNNNGC 4 cut(s) 300, 632, 797, 1430
HpyF3I CTNAG 2 cut(s) 806, 1128
Hsp92II CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1612
HspAI GCGC 2 cut(s) 633, 1422
Ksp22I TGATCA 1 cut(s) 1039
KspAI GTTAAC 1 cut(s) 1495
Kzo9I GATC 4 cut(s) 6, 657, 1039, 1168
LmnI GCTCC 4 cut(s) 599, 796, 797, 859
Lsp1109I GCAGC 2 cut(s) 96, 441
LweI GCATC 3 cut(s) 80, 760, 1409
MaeI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
MaeIII GTNAC 7 cut(s) 63, 461, 485, 560, 619, 670, 1426
MalI GATC 4 cut(s) 8, 659, 1041, 1170
MboI GATC 4 cut(s) 6, 657, 1039, 1168
MfeI CAATTG 1 cut(s) 481
MflI RGATCY 2 cut(s) 6, 1168
MlsI TGGCCA 2 cut(s) 431, 1072
MluCI AATT 8 cut(s) 481, 627, 636, 725, 853, 1338, 1566, 1580
MluNI TGGCCA 2 cut(s) 431, 1072
MlyI GAGTC 2 cut(s) 173, 281
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 8 cut(s) 217, 315, 398, 562, 608, 934, 1555, 1596
Mox20I TGGCCA 2 cut(s) 431, 1072
Mph1103I ATGCAT 1 cut(s) 1614
MroXI GAANNNNTTC 2 cut(s) 96, 1056
MscI TGGCCA 2 cut(s) 431, 1072
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 2 cut(s) 431, 1072
MspA1I CMGCKG 1 cut(s) 1158
MspI CCGG 2 cut(s) 588, 1575
MspR9I CCNGG 3 cut(s) 231, 702, 795
MunI CAATTG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 1017
MvaI CCWGG 3 cut(s) 231, 702, 795
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 4 cut(s) 300, 632, 797, 1430
NcoI CCATGG 1 cut(s) 264
NdeII GATC 4 cut(s) 6, 657, 1039, 1168
NlaIII CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1612
NlaIV GGNNCC 3 cut(s) 386, 833, 914
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 4 cut(s) 63, 461, 619, 670
NsiI ATGCAT 1 cut(s) 1614
NspI RCATGY 2 cut(s) 298, 1612
PaeR7I CTCGAG 1 cut(s) 761
PagI TCATGA 1 cut(s) 1137
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 173
PctI GAATGC 1 cut(s) 1017
PdmI GAANNNNTTC 2 cut(s) 96, 1056
PfeI GAWTC 5 cut(s) 697, 757, 810, 1261, 1595
PflMI CCANNNNNTGG 1 cut(s) 908
PfoI TCCNGGA 3 cut(s) 229, 700, 793
PkrI GCNGC 6 cut(s) 14, 111, 157, 174, 456, 1350
PleI GAGTC 2 cut(s) 172, 280
PpsI GAGTC 2 cut(s) 172, 280
PpuMI RGGWCCY 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 229, 700, 793
PspFI CCCAGC 1 cut(s) 1601
PspGI CCWGG 3 cut(s) 229, 700, 793
PspN4I GGNNCC 3 cut(s) 386, 833, 914
PspPI GGNCC 5 cut(s) 261, 385, 571, 989, 1365
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 442
PsuI RGATCY 2 cut(s) 6, 1168
RsaI GTAC 1 cut(s) 1251
RsaNI GTAC 1 cut(s) 1250
RseI CAYNNNNRTG 1 cut(s) 332
SatI GCNGC 6 cut(s) 13, 110, 156, 173, 455, 1349
Sau3AI GATC 4 cut(s) 6, 657, 1039, 1168
Sau96I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
ScaI AGTACT 1 cut(s) 1251
SchI GAGTC 2 cut(s) 173, 281
ScrFI CCNGG 3 cut(s) 231, 702, 795
SfaNI GCATC 3 cut(s) 80, 760, 1409
Sfr274I CTCGAG 1 cut(s) 761
SinI GGWCC 1 cut(s) 385
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 8 cut(s) 481, 627, 636, 725, 853, 1338, 1566, 1580
SsiI CCGC 7 cut(s) 12, 155, 173, 362, 917, 1158, 1348
SspI AATATT 2 cut(s) 533, 553
SspMI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
StyD4I CCNGG 3 cut(s) 229, 700, 793
StyI CCWWGG 2 cut(s) 264, 279
TaaI ACNGT 4 cut(s) 334, 491, 1057, 1077
TaqI TCGA 4 cut(s) 167, 309, 762, 1045
TasI AATT 8 cut(s) 481, 627, 636, 725, 853, 1338, 1566, 1580
TatI WGTACW 1 cut(s) 1249
TauI GCSGC 4 cut(s) 15, 158, 175, 1351
TfiI GAWTC 5 cut(s) 697, 757, 810, 1261, 1595
TscAI CASTG 3 cut(s) 339, 628, 1080
TseFI GTSAC 4 cut(s) 63, 461, 619, 670
TseI GCWGC 2 cut(s) 109, 454
Tsp45I GTSAC 4 cut(s) 63, 461, 619, 670
TspGWI ACGGA 3 cut(s) 51, 90, 556
TspRI CASTG 3 cut(s) 339, 628, 1080
Van91I CCANNNNNTGG 1 cut(s) 908
VpaK11BI GGWCC 1 cut(s) 385
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 2 cut(s) 853, 1580
XbaI TCTAGA 1 cut(s) 1060
XceI RCATGY 2 cut(s) 298, 1612
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 761
XmnI GAANNNNTTC 2 cut(s) 96, 1056
XspI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
ZrmI AGTACT 1 cut(s) 1251
Zsp2I ATGCAT 1 cut(s) 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.