Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Reverse (-)

59696681 .. 59701138

Gene Structure 4458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004479

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGAACGAGAAGCCGTCGCCTGAAGATGGCAGGGTTTCTGTCAACTTGGTCTTGAAGAGAAAGCGAGGTGCCCGTCCGCCTTATTTGTTTATTCAGGTCTCATTTGATGATTTGAAAGCACCAGCAACAGAACCAGCGACGCTGGAGAAGGAGCAGCAGGACGGTGTAGCGAAGGCTGAGCGTTCCATTACATTCTCAACCACCTCAAGGACTAGGGGTCCAGATATTGTTAACAAGGCTAGGGATCTTCTTGAGCTTTTAACATTGACTGCGGTTCCGCCATGGTTTGAAACAGTAATGAGAAGAAAACGGACAGAGGAGAAGAGAAAGAATGATGTTCATGTTGTCATGTCCGAGCCAACAGCAGCTGCAATGGAGGGTCCTGTTCGGCCCTTCGTGGAACAAAGCTGGCATGATGAGGGTTTCATGACATTCTCAACTAAGGATCGAGATACTATTTACAAGGCTAGAGATGTTCTTGAACTTCTGTCATCGACTTCTGTTAAGCCCTCACTGGAGACGTTCGTTAAGCAGACTGGACTTTTGAAAGCCTCTTTACAGAAAGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.65

Weight (kDa)

9.07

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AciI	CCGC	3 cut(s)	80, 275, 281
AclWI	GGATC	2 cut(s)	255, 456
AcuI	CTGAAG	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	29, 210
AgsI	TTSAA	5 cut(s)	58, 118, 293, 485, 550
AhdI	GACNNNNNGTC	1 cut(s)	219
AluBI	AGCT	3 cut(s)	259, 371, 411
AluI	AGCT	3 cut(s)	259, 371, 411
Alw26I	GTCTC	2 cut(s)	106, 515
AlwI	GGATC	2 cut(s)	255, 456
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	157, 368, 371
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AspS9I	GGNCC	3 cut(s)	221, 383, 393
AvaII	GGWCC	2 cut(s)	221, 383
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	169, 358, 380
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	106, 515
BfaI	CTAG	3 cut(s)	216, 243, 471
BisI	GCNGC	3 cut(s)	158, 369, 372
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	3 cut(s)	159, 370, 373
Bme18I	GGWCC	2 cut(s)	221, 383
BmeRI	GACNNNNNGTC	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	221, 383, 393
BmiI	GGNNCC	4 cut(s)	73, 222, 279, 384
BpmI	CTGGAG	2 cut(s)	167, 539
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	193, 275
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 210
Bse1I	ACTGG	2 cut(s)	522, 544
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	29, 210
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	522, 544
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	169, 358, 380
BshFI	GGCC	1 cut(s)	394
BshNI	GGYRCC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	29, 210
BsmAI	GTCTC	2 cut(s)	106, 515
BsmBI	CGTCTC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	394
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	247, 448
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	3 cut(s)	80, 275, 281
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	4 cut(s)	73, 222, 279, 384
BspPI	GGATC	2 cut(s)	255, 456
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	522, 544
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	2 cut(s)	247, 448
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	167, 298
Bst6I	CTCTTC	2 cut(s)	53, 320
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	180, 444
BstDSI	CCRYGG	1 cut(s)	284
BstKTI	GATC	2 cut(s)	250, 451
BstMAI	GTCTC	2 cut(s)	106, 515
BstMBI	GATC	2 cut(s)	247, 448
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	169, 358, 380
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	413
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	3 cut(s)	221, 383, 393
CseI	GACGC	1 cut(s)	151
CviAII	CATG	5 cut(s)	285, 344, 352, 416, 430
DdeI	CTNAG	2 cut(s)	180, 444
DpnI	GATC	2 cut(s)	249, 450
DpnII	GATC	2 cut(s)	247, 448
DriI	GACNNNNNGTC	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	53, 320
Eam1105I	GACNNNNNGTC	1 cut(s)	219
EarI	CTCTTC	2 cut(s)	53, 320
EciI	GGCGGA	2 cut(s)	69, 270
Eco130I	CCWWGG	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	221, 383
Eco57I	CTGAAG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	5 cut(s)	288, 347, 355, 419, 433
FaiI	YATR	5 cut(s)	286, 345, 353, 417, 431
FatI	CATG	5 cut(s)	284, 343, 351, 415, 429
Fnu4HI	GCNGC	3 cut(s)	158, 369, 372
Fsp4HI	GCNGC	3 cut(s)	158, 369, 372
FspBI	CTAG	3 cut(s)	216, 243, 471
GluI	GCNGC	3 cut(s)	158, 369, 372
GsuI	CTGGAG	2 cut(s)	167, 539
HaeIII	GGCC	1 cut(s)	394
HgaI	GACGC	1 cut(s)	151
Hin1II	CATG	5 cut(s)	288, 347, 355, 419, 433
HincII	GTYRAC	2 cut(s)	46, 235
HindII	GTYRAC	2 cut(s)	46, 235
HpaI	GTTAAC	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	46, 235
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	6 cut(s)	55, 224, 254, 430, 452, 482
Hpy8I	GTNNAC	2 cut(s)	46, 235
Hpy99I	CGWCG	2 cut(s)	22, 145
HpyAV	CCTTC	3 cut(s)	145, 169, 406
HpyCH4III	ACNGT	2 cut(s)	167, 298
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	180, 444
HpySE526I	ACGT	1 cut(s)	524
Hsp92II	CATG	5 cut(s)	288, 347, 355, 419, 433
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	247, 448
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	3 cut(s)	169, 358, 380
MaeI	CTAG	3 cut(s)	216, 243, 471
MaeII	ACGT	1 cut(s)	524
MalI	GATC	2 cut(s)	249, 450
MboI	GATC	2 cut(s)	247, 448
MboII	GAAGA	5 cut(s)	38, 70, 242, 318, 337
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	62, 217, 313, 373, 415, 523, 565
MseI	TTAA	4 cut(s)	234, 263, 507, 531
MspA1I	CMGCKG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	2 cut(s)	247, 448
NlaIII	CATG	5 cut(s)	288, 347, 355, 419, 433
NlaIV	GGNNCC	4 cut(s)	73, 222, 279, 384
PagI	TCATGA	1 cut(s)	429
PkrI	GCNGC	3 cut(s)	159, 370, 373
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
PspN4I	GGNNCC	4 cut(s)	73, 222, 279, 384
PspPI	GGNCC	3 cut(s)	221, 383, 393
PspPPI	RGGWCCY	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	234, 263, 507, 531
SatI	GCNGC	3 cut(s)	158, 369, 372
Sau3AI	GATC	2 cut(s)	247, 448
Sau96I	GGNCC	3 cut(s)	221, 383, 393
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	7 cut(s)	73, 102, 209, 261, 373, 413, 527
SinI	GGWCC	2 cut(s)	221, 383
SmlI	CTYRAG	2 cut(s)	208, 254
SmoI	CTYRAG	2 cut(s)	208, 254
SsiI	CCGC	3 cut(s)	80, 275, 281
SspMI	CTAG	3 cut(s)	216, 243, 471
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	167, 298
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	2 cut(s)	451, 497
Tru1I	TTAA	4 cut(s)	234, 263, 507, 531
Tru9I	TTAA	4 cut(s)	234, 263, 507, 531
TscAI	CASTG	1 cut(s)	522
TseI	GCWGC	3 cut(s)	157, 368, 371
TspDTI	ATGAA	2 cut(s)	332, 418
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	2 cut(s)	221, 383
XspI	CTAG	3 cut(s)	216, 243, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.