Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005329.1

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

187283 .. 192377

Gene Structure 5095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005329.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atggagatctgcggcgacaaatggaagtcgtcggacgatacgaaggctgtgttgtcccgtccgtcactcgcatcacgcttttcgtttggcgaaagagttccgtggtggctgcacgcaacgaccttttcgccgagaaaaataacaacagaaggggcggcaatggagtcgaagccgccgttgaacaaggatggcatggttacttacacctccttctcttccatgttttatcctggacgagcaaaagtgttggcagaagaatggcccatggtggagtcggccttgggagagtatggcgtgtcatgcaaactcgattgggatgagaggttcataacagtggcaacgacgacaaggactaggggtgcggatattgtttacaaggctagggacctccttcatcttctggcattgactaatgttccaccatcaatgggattttctgtcactgcaattagcgcaattcctgaaggactattgacgatcaggggtattgtgacaccctgcattgttaaaggtcagaatcctggaactgctgtcaggttgttgaaattgtttcaagaaaggaatggacagacagagaatctcgagatggatgcttatgggttcaaaactgctcctggagcaaaactgagattcttgaagcgattaggtgggaacccattagttgaacataaaaattcggagcttaccctgactagggggggtgatgtcggggaactgaagccatccattgggaacccgcgagaaaaatcggaggatgaccctacaccagaagtcaatcagacagagttttctttatttggcccttcgttgaacaaagatggaatgcttatgtgtggttcgttcttccttgatcatcgagaagccgttctagaagcttggccacagttgaagtcgcttttagaagattatggcatttcatgtacaatgtatctggctgagcgtttcatgacattatcaacaaccagcgggactgaagatccagatattatttacaaggctagggatgttcttgaacttttgtcattaactcgtgttccaccatcaatggtaatgaaagtactgaatgagaatctgcaatatgacatcatcaagactgcgtatcgtaatggtggtttttgctcacaatataagattgacaggggatgcgctgttactgctatgggttttaagcgtcaaggattaaagttggtcaggattggcgtgaaagagtgccttgttaacaatgtgagacctaaaactatgcttcggaagatgaagttgacccttgaaaggatgaaaatgaaagaggaaattactgccggagaatttcctcctgtggaatctgctgggaacatgcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

446

Amino Acids

49.71

Weight (kDa)

8.62

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccII	CGCG	1 cut(s)	739
AciI	CCGC	6 cut(s)	12, 155, 173, 362, 737, 966
AclWI	GGATC	1 cut(s)	971
AcoI	YGGCCR	1 cut(s)	878
AcsI	RAATTY	2 cut(s)	673, 1304
AcuI	CTGAAG	3 cut(s)	483, 737, 993
AfaI	GTAC	2 cut(s)	922, 1059
AfiI	CCNNNNNNNGG	5 cut(s)	428, 693, 694, 728, 1269
AjnI	CCWGG	3 cut(s)	229, 520, 613
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	682, 875
AluI	AGCT	2 cut(s)	682, 875
Alw26I	GTCTC	1 cut(s)	1222
AlwI	GGATC	1 cut(s)	971
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	260, 276, 799, 878
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	673, 1304
Asp700I	GAANNNNTTC	2 cut(s)	96, 864
AspLEI	GCGC	2 cut(s)	455, 1148
AspS9I	GGNCC	3 cut(s)	261, 385, 800
AsuHPI	GGTGA	1 cut(s)	713
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	880
BauI	CACGAG	1 cut(s)	1029
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	6 cut(s)	182, 430, 580, 730, 812, 1048
BceAI	ACGGC	2 cut(s)	160, 848
BcgI	CGANNNNNNTGC	4 cut(s)	147, 181, 572, 606
BciT130I	CCWGG	3 cut(s)	231, 522, 615
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	1 cut(s)	1222
BfaI	CTAG	5 cut(s)	354, 381, 693, 869, 999
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	4 cut(s)	13, 110, 156, 173
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	4 cut(s)	14, 111, 157, 174
BmcAI	AGTACT	1 cut(s)	1059
Bme1390I	CCNGG	3 cut(s)	231, 522, 615
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	3 cut(s)	261, 385, 800
BmiI	GGNNCC	3 cut(s)	386, 653, 734
BmrFI	CCNGG	3 cut(s)	231, 522, 615
BmsI	GCATC	3 cut(s)	80, 580, 1133
BpmI	CTGGAG	1 cut(s)	636
Bpu1102I	GCTNAGC	1 cut(s)	936
BsaI	GGTCTC	1 cut(s)	1222
BsaJI	CCNNGG	3 cut(s)	101, 264, 279
Bsc4I	CCNNNNNNNGG	5 cut(s)	428, 693, 694, 728, 1269
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	231, 522, 615
BseDI	CCNNGG	3 cut(s)	101, 264, 279
BseGI	GGATG	8 cut(s)	193, 322, 595, 722, 760, 1009, 1148, 1278
BseLI	CCNNNNNNNGG	5 cut(s)	428, 693, 694, 728, 1269
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	617, 927
BseXI	GCAGC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	1325
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	739
BshFI	GGCC	4 cut(s)	262, 278, 801, 880
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	1299
BslFI	GGGAC	3 cut(s)	40, 398, 982
BslI	CCNNNNNNNGG	5 cut(s)	428, 693, 694, 728, 1269
BsmAI	GTCTC	1 cut(s)	1222
BsmFI	GGGAC	3 cut(s)	40, 398, 982
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	4 cut(s)	262, 278, 801, 880
Bso31I	GGTCTC	1 cut(s)	1222
BsoBI	CYCGRG	1 cut(s)	581
Bsp1407I	TGTACA	1 cut(s)	920
Bsp143I	GATC	4 cut(s)	6, 477, 850, 976
Bsp1720I	GCTNAGC	1 cut(s)	936
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	6 cut(s)	12, 155, 173, 362, 737, 966
BspANI	GGCC	4 cut(s)	262, 278, 801, 880
BspCNI	CTCAG	2 cut(s)	618, 928
BspFNI	CGCG	1 cut(s)	739
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	3 cut(s)	386, 653, 734
BspPI	GGATC	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	1222
BsrDI	GCAATG	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	920
BssECI	CCNNGG	3 cut(s)	101, 264, 279
BssMI	GATC	4 cut(s)	6, 477, 850, 976
BssSI	CACGAG	1 cut(s)	1029
BssT1I	CCWWGG	2 cut(s)	264, 279
Bst2BI	CACGAG	1 cut(s)	1029
Bst2UI	CCWGG	3 cut(s)	231, 522, 615
Bst4CI	ACNGT	2 cut(s)	334, 885
Bst6I	CTCTTC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	920
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	626, 936
BstDSI	CCRYGG	2 cut(s)	101, 264
BstF5I	GGATG	8 cut(s)	193, 322, 595, 722, 760, 1009, 1148, 1278
BstFNI	CGCG	1 cut(s)	739
BstHHI	GCGC	2 cut(s)	455, 1148
BstKTI	GATC	4 cut(s)	9, 480, 853, 979
BstMAI	GTCTC	1 cut(s)	1222
BstMBI	GATC	4 cut(s)	6, 477, 850, 976
BstMWI	GCNNNNNNNGC	4 cut(s)	300, 452, 617, 1154
BstNI	CCWGG	3 cut(s)	231, 522, 615
BstNSI	RCATGY	1 cut(s)	1336
BstSCI	CCNGG	3 cut(s)	229, 520, 613
BstUI	CGCG	1 cut(s)	739
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	6, 976
BstYI	RGATCY	2 cut(s)	6, 976
BsuRI	GGCC	4 cut(s)	262, 278, 801, 880
BtgI	CCRYGG	2 cut(s)	101, 264
BtsCI	GGATG	8 cut(s)	193, 322, 595, 722, 760, 1009, 1148, 1278
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	339, 441
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	2 cut(s)	455, 1148
Cfr13I	GGNCC	3 cut(s)	261, 385, 800
CseI	GACGC	1 cut(s)	1160
Csp6I	GTAC	2 cut(s)	921, 1058
CviAII	CATG	7 cut(s)	193, 220, 265, 300, 918, 946, 1333
CviQI	GTAC	2 cut(s)	921, 1058
DdeI	CTNAG	2 cut(s)	626, 936
DpnI	GATC	4 cut(s)	8, 479, 852, 978
DpnII	GATC	4 cut(s)	6, 477, 850, 976
EaeI	YGGCCR	1 cut(s)	878
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	264, 279
Eco31I	GGTCTC	1 cut(s)	1222
Eco47I	GGWCC	1 cut(s)	385
Eco57I	CTGAAG	3 cut(s)	483, 737, 993
Eco88I	CYCGRG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	3 cut(s)	229, 520, 613
EcoT14I	CCWWGG	2 cut(s)	264, 279
EcoT22I	ATGCAT	1 cut(s)	1338
ErhI	CCWWGG	2 cut(s)	264, 279
FaeI	CATG	7 cut(s)	196, 223, 268, 303, 921, 949, 1336
FalI	AAGNNNNNCTT	2 cut(s)	1197, 1229
FaqI	GGGAC	3 cut(s)	40, 398, 982
FatI	CATG	7 cut(s)	192, 219, 264, 299, 917, 945, 1332
FauI	CCCGC	2 cut(s)	744, 959
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	4 cut(s)	13, 110, 156, 173
FokI	GGATG	8 cut(s)	200, 329, 602, 709, 767, 1016, 1155, 1285
Fsp4HI	GCNGC	4 cut(s)	13, 110, 156, 173
FspBI	CTAG	5 cut(s)	354, 381, 693, 869, 999
GlaI	GCGC	2 cut(s)	454, 1147
GluI	GCNGC	4 cut(s)	13, 110, 156, 173
GsaI	CCCAGC	1 cut(s)	1329
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	4 cut(s)	262, 278, 801, 880
HapII	CCGG	1 cut(s)	1299
HgaI	GACGC	1 cut(s)	1160
HhaI	GCGC	2 cut(s)	455, 1148
Hin1II	CATG	7 cut(s)	196, 223, 268, 303, 921, 949, 1336
Hin6I	GCGC	2 cut(s)	453, 1146
HinP1I	GCGC	2 cut(s)	453, 1146
HincII	GTYRAC	2 cut(s)	1219, 1260
HindII	GTYRAC	2 cut(s)	1219, 1260
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	7 cut(s)	164, 272, 517, 577, 630, 1069, 1319
HpaI	GTTAAC	1 cut(s)	1219
HpaII	CCGG	1 cut(s)	1299
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	3 cut(s)	373, 1219, 1260
Hpy188I	TCNGA	6 cut(s)	34, 516, 679, 751, 780, 1248
Hpy8I	GTNNAC	3 cut(s)	373, 1219, 1260
Hpy99I	CGWCG	2 cut(s)	34, 346
HpyAV	CCTTC	6 cut(s)	37, 143, 220, 401, 458, 813
HpyCH4III	ACNGT	2 cut(s)	334, 885
HpyCH4V	TGCA	6 cut(s)	112, 303, 446, 501, 1075, 1336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	300, 452, 617, 1154
HpyF3I	CTNAG	2 cut(s)	626, 936
Hsp92II	CATG	7 cut(s)	196, 223, 268, 303, 921, 949, 1336
HspAI	GCGC	2 cut(s)	453, 1146
Ksp22I	TGATCA	1 cut(s)	850
KspAI	GTTAAC	1 cut(s)	1219
Kzo9I	GATC	4 cut(s)	6, 477, 850, 976
LmnI	GCTCC	3 cut(s)	616, 617, 679
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	3 cut(s)	80, 580, 1133
MaeI	CTAG	5 cut(s)	354, 381, 693, 869, 999
MaeIII	GTNAC	5 cut(s)	63, 196, 439, 490, 1150
MalI	GATC	4 cut(s)	8, 479, 852, 978
MboI	GATC	4 cut(s)	6, 477, 850, 976
MboII	GAAGA	7 cut(s)	207, 266, 389, 835, 914, 986, 1261
MflI	RGATCY	2 cut(s)	6, 976
MlsI	TGGCCA	1 cut(s)	880
MluCI	AATT	6 cut(s)	447, 456, 545, 673, 1290, 1304
MluNI	TGGCCA	1 cut(s)	880
MlyI	GAGTC	2 cut(s)	173, 281
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	6 cut(s)	217, 315, 398, 745, 1279, 1320
Mox20I	TGGCCA	1 cut(s)	880
Mph1103I	ATGCAT	1 cut(s)	1338
MroXI	GAANNNNTTC	2 cut(s)	96, 864
MscI	TGGCCA	1 cut(s)	880
MseI	TTAA	6 cut(s)	507, 1025, 1167, 1181, 1218, 1339
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	880
MspA1I	CMGCKG	1 cut(s)	966
MspI	CCGG	1 cut(s)	1299
MspR9I	CCNGG	3 cut(s)	231, 522, 615
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	3 cut(s)	231, 522, 615
MvnI	CGCG	1 cut(s)	739
MwoI	GCNNNNNNNGC	4 cut(s)	300, 452, 617, 1154
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	6, 477, 850, 976
NlaIII	CATG	7 cut(s)	196, 223, 268, 303, 921, 949, 1336
NlaIV	GGNNCC	3 cut(s)	386, 653, 734
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	3 cut(s)	63, 439, 490
NsiI	ATGCAT	1 cut(s)	1338
NspI	RCATGY	1 cut(s)	1336
PaeR7I	CTCGAG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 173
PctI	GAATGC	1 cut(s)	828
PdmI	GAANNNNTTC	2 cut(s)	96, 864
PfeI	GAWTC	5 cut(s)	517, 577, 630, 1069, 1319
PflMI	CCANNNNNTGG	1 cut(s)	728
PfoI	TCCNGGA	3 cut(s)	229, 520, 613
PkrI	GCNGC	4 cut(s)	14, 111, 157, 174
PleI	GAGTC	2 cut(s)	172, 280
PpsI	GAGTC	2 cut(s)	172, 280
PpuMI	RGGWCCY	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	229, 520, 613
PspFI	CCCAGC	1 cut(s)	1325
PspGI	CCWGG	3 cut(s)	229, 520, 613
PspN4I	GGNNCC	3 cut(s)	386, 653, 734
PspPI	GGNCC	3 cut(s)	261, 385, 800
PspPPI	RGGWCCY	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	6, 976
RsaI	GTAC	2 cut(s)	922, 1059
RsaNI	GTAC	2 cut(s)	921, 1058
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	6 cut(s)	507, 1025, 1167, 1181, 1218, 1339
SatI	GCNGC	4 cut(s)	13, 110, 156, 173
Sau3AI	GATC	4 cut(s)	6, 477, 850, 976
Sau96I	GGNCC	3 cut(s)	261, 385, 800
ScaI	AGTACT	1 cut(s)	1059
SchI	GAGTC	2 cut(s)	173, 281
ScrFI	CCNGG	3 cut(s)	231, 522, 615
SfaNI	GCATC	3 cut(s)	80, 580, 1133
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	6 cut(s)	447, 456, 545, 673, 1290, 1304
SsiI	CCGC	6 cut(s)	12, 155, 173, 362, 737, 966
SspMI	CTAG	5 cut(s)	354, 381, 693, 869, 999
StyD4I	CCNGG	3 cut(s)	229, 520, 613
StyI	CCWWGG	2 cut(s)	264, 279
TaaI	ACNGT	2 cut(s)	334, 885
TaqI	TCGA	4 cut(s)	167, 309, 582, 856
TasI	AATT	6 cut(s)	447, 456, 545, 673, 1290, 1304
TatI	WGTACW	2 cut(s)	920, 1057
TauI	GCSGC	3 cut(s)	15, 158, 175
TfiI	GAWTC	5 cut(s)	517, 577, 630, 1069, 1319
Tru1I	TTAA	6 cut(s)	507, 1025, 1167, 1181, 1218, 1339
Tru9I	TTAA	6 cut(s)	507, 1025, 1167, 1181, 1218, 1339
TscAI	CASTG	2 cut(s)	339, 448
TseFI	GTSAC	3 cut(s)	63, 439, 490
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	3 cut(s)	63, 439, 490
TspDTI	ATGAA	8 cut(s)	316, 383, 906, 934, 1067, 1268, 1289, 1295
TspGWI	ACGGA	2 cut(s)	51, 90
TspRI	CASTG	2 cut(s)	339, 448
Van91I	CCANNNNNTGG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	2 cut(s)	673, 1304
XbaI	TCTAGA	1 cut(s)	868
XceI	RCATGY	1 cut(s)	1336
XhoI	CTCGAG	1 cut(s)	581
XmnI	GAANNNNTTC	2 cut(s)	96, 864
XspI	CTAG	5 cut(s)	354, 381, 693, 869, 999
ZrmI	AGTACT	1 cut(s)	1059
Zsp2I	ATGCAT	1 cut(s)	1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.