Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Reverse (-)

53828557 .. 53832736

Gene Structure 4180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCAACAACAATCGCAACCGGAAACGCAAACAAAAACGAAAATGTGAACGAAGCACCAGAAGATACAAAAGCAACGACGTCGACGATGGAGAACGAGAAGCCGTCGCGTGAAGATGGCGGGGACTGGGGTCCAGATATTGTTAACAAGGCTAGAGATCCTCTTGAGATTTTAACATTAACTGCGGTTCCGCCATTAAAGGTGCATAAGGCAGATCTGTGTCGAGCCATACAAGTACTGGACGGTCTGCAATATGACATCATCAAAACCGGGTATCACAATGGTGGCTTTCGTTCAAGACTGCCACTTGAGAAGCAGGGGAGTTCTGTCACTGCTTTGGGAACTTCACTTACAAGATTGAAGTTCGTCAGGGACGTTGTGGAAGCCTGCATTGTAAGAAATGTGACGCCTGCAACTCTGATAAGGTTGATGAACTTTAGTCGTCAATTGGGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.56

Weight (kDa)

7.78

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	83
AccII	CGCG	1 cut(s)	109
AciI	CCGC	3 cut(s)	120, 185, 191
AclWI	GGATC	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	80, 407
AfaI	GTAC	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	297, 361
AleI	CACNNNNGTG	1 cut(s)	282
AlwI	GGATC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	131
BccI	CCATC	2 cut(s)	82, 110
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	153
BglII	AGATCT	1 cut(s)	214
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	132, 189
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	136
BoxI	GACNNNNGTC	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	185, 329
BpuMI	CCSGG	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	80, 407
BsaWI	WCCGGW	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	131, 243
BseNI	ACTGG	2 cut(s)	131, 243
Bsh1236I	CGCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	21, 270
BslFI	GGGAC	2 cut(s)	137, 386
BsmFI	GGGAC	2 cut(s)	137, 386
Bsp143I	GATC	2 cut(s)	157, 214
BspACI	CCGC	3 cut(s)	120, 185, 191
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	132, 189
BspPI	GGATC	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	131, 243
BssMI	GATC	2 cut(s)	157, 214
BssNI	GRCGYC	2 cut(s)	80, 407
Bst4CI	ACNGT	1 cut(s)	245
BstACI	GRCGYC	2 cut(s)	80, 407
BstC8I	GCNNGC	2 cut(s)	388, 411
BstFNI	CGCG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	160, 217
BstMBI	GATC	2 cut(s)	157, 214
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	157, 214
BstYI	RGATCY	2 cut(s)	157, 214
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	388, 411
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	236
CviJI	RGCY	5 cut(s)	103, 152, 227, 288, 386
CviKI_1	RGCY	5 cut(s)	103, 152, 227, 288, 386
CviQI	GTAC	1 cut(s)	236
DpnI	GATC	2 cut(s)	159, 216
DpnII	GATC	2 cut(s)	157, 214
EciI	GGCGGA	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	131
FaiI	YATR	3 cut(s)	207, 230, 255
FaqI	GGGAC	2 cut(s)	137, 386
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	153
HapII	CCGG	2 cut(s)	21, 270
HgaI	GACGC	1 cut(s)	415
Hin1I	GRCGYC	2 cut(s)	80, 407
HincII	GTYRAC	3 cut(s)	6, 84, 145
HindII	GTYRAC	3 cut(s)	6, 84, 145
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	21, 270
Hpy166II	GTNNAC	4 cut(s)	6, 49, 84, 145
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	3 cut(s)	134, 164, 297
Hpy8I	GTNNAC	4 cut(s)	6, 49, 84, 145
Hpy99I	CGWCG	4 cut(s)	82, 85, 88, 109
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	2 cut(s)	80, 375
HpyCH4V	TGCA	4 cut(s)	205, 250, 390, 413
HpySE526I	ACGT	2 cut(s)	80, 375
Hsp92I	GRCGYC	2 cut(s)	80, 407
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	157, 214
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	80, 375
MaeIII	GTNAC	2 cut(s)	328, 403
MalI	GATC	2 cut(s)	159, 216
MboI	GATC	2 cut(s)	157, 214
MboII	GAAGA	2 cut(s)	74, 125
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	2 cut(s)	157, 214
MluCI	AATT	1 cut(s)	446
MnlI	CCTC	1 cut(s)	171
MseI	TTAA	4 cut(s)	144, 173, 179, 197
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	2 cut(s)	21, 270
MspR9I	CCNGG	1 cut(s)	271
MunI	CAATTG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	109
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	157, 214
NlaIV	GGNNCC	2 cut(s)	132, 189
NmuCI	GTSAC	2 cut(s)	328, 403
OliI	CACNNNNGTG	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 372
PshAI	GACNNNNGTC	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	132, 189
PspPI	GGNCC	1 cut(s)	131
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PsuI	RGATCY	2 cut(s)	157, 214
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	282
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	4 cut(s)	144, 173, 179, 197
Sau3AI	GATC	2 cut(s)	157, 214
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	4 cut(s)	83, 204, 378, 428
SgrDI	CGTCGACG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	164, 308
SmoI	CTYRAG	2 cut(s)	164, 308
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	3 cut(s)	120, 185, 191
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	2 cut(s)	83, 378
TaqI	TCGA	2 cut(s)	83, 223
TasI	AATT	1 cut(s)	446
TatI	WGTACW	1 cut(s)	235
Tru1I	TTAA	4 cut(s)	144, 173, 179, 197
Tru9I	TTAA	4 cut(s)	144, 173, 179, 197
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	328, 403
Tsp45I	GTSAC	2 cut(s)	328, 403
TspDTI	ATGAA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	81
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.