Rroxscaffold_3G00273420

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003458
Physical Location & Seq
Reverse (-)
65181460 .. 65186475
5016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273420.1

Sequence Viewer

Length: 357 bp
ATGATGATGGAGATCTGCGGCGACAAGTGGAAGTCGTCGGACGATATGAAGGCGGTGTTGTACCGTCCGTCACTCGCATCACGCTTTTCGTTTGGCGAAAGAGTTCCGTGGTGGCTGCACGCAACGACCTTTTCGCCGAGAAAAATAACAACAGAAGGGGCGGCGATGGAGTCGAAGCCGCCGTGGAACAAGGATGGCATGGTTGCTTACACCTCCTTCTCTTCCATGTTTTATCCTGGACGAGCAAAAGTGTTGGCAGAAGAATGGCCCATGGTGGAGTCGGCCTTGGGAGAGTATGGCATGTCATGCAAACTCGATTGGGAAAGCCAGAGCATGCACAGTGATACACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.48

Weight (kDa)

5.37

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 18, 53, 161, 179
AfaI GTAC 1 cut(s) 62
AjnI CCWGG 1 cut(s) 235
AoxI GGCC 2 cut(s) 266, 282
ApeKI GCWGC 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 160, 188
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 237
BglII AGATCT 1 cut(s) 12
BisI GCNGC 4 cut(s) 19, 116, 162, 179
BlsI GCNGC 4 cut(s) 20, 117, 163, 180
Bme1390I CCNGG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 107, 182, 270, 285
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 4 cut(s) 107, 182, 270, 285
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 11
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 2 cut(s) 268, 284
BsnI GGCC 2 cut(s) 268, 284
Bsp143I GATC 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 4 cut(s) 18, 53, 161, 179
BspANI GGCC 2 cut(s) 268, 284
BssECI CCNNGG 4 cut(s) 107, 182, 270, 285
BssMI GATC 1 cut(s) 12
BssT1I CCWWGG 2 cut(s) 270, 285
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 65, 341
Bst6I CTCTTC 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 120, 335
BstDSI CCRYGG 3 cut(s) 107, 182, 270
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 2 cut(s) 304, 337
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 2 cut(s) 268, 284
BtgI CCRYGG 3 cut(s) 107, 182, 270
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 120, 335
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 61
CviAII CATG 6 cut(s) 199, 226, 271, 301, 306, 334
CviJI RGCY 5 cut(s) 115, 178, 268, 284, 327
CviKI_1 RGCY 5 cut(s) 115, 178, 268, 284, 327
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 270, 285
EcoRII CCWGG 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 270, 285
ErhI CCWWGG 2 cut(s) 270, 285
FaeI CATG 6 cut(s) 202, 229, 274, 304, 309, 337
FaiI YATR 8 cut(s) 47, 200, 227, 272, 297, 302, 307, 335
FatI CATG 6 cut(s) 198, 225, 270, 300, 305, 333
Fnu4HI GCNGC 4 cut(s) 19, 116, 162, 179
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 19, 116, 162, 179
GluI GCNGC 4 cut(s) 19, 116, 162, 179
HaeIII GGCC 2 cut(s) 268, 284
Hin1II CATG 6 cut(s) 202, 229, 274, 304, 309, 337
HinfI GANTC 2 cut(s) 170, 278
Hpy188I TCNGA 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 3 cut(s) 43, 149, 226
HpyCH4III ACNGT 2 cut(s) 65, 341
HpyCH4V TGCA 3 cut(s) 118, 309, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
Hsp92II CATG 6 cut(s) 202, 229, 274, 304, 309, 337
Kzo9I GATC 1 cut(s) 12
LpnPI CCDG 3 cut(s) 222, 249, 341
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 2 cut(s) 213, 272
MflI RGATCY 1 cut(s) 12
MlyI GAGTC 2 cut(s) 179, 287
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 306
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 12
NlaIII CATG 6 cut(s) 202, 229, 274, 304, 309, 337
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 69
NspI RCATGY 2 cut(s) 304, 337
PaeI GCATGC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 102
PfoI TCCNGGA 1 cut(s) 235
PkrI GCNGC 4 cut(s) 20, 117, 163, 180
PleI GAGTC 2 cut(s) 178, 286
PpsI GAGTC 2 cut(s) 178, 286
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 4 cut(s) 19, 116, 162, 179
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 2 cut(s) 179, 287
ScrFI CCNGG 1 cut(s) 237
SetI ASST 2 cut(s) 131, 215
SfaNI GCATC 1 cut(s) 86
SphI GCATGC 1 cut(s) 337
SsiI CCGC 4 cut(s) 18, 53, 161, 179
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 2 cut(s) 270, 285
TaaI ACNGT 2 cut(s) 65, 341
TaqI TCGA 2 cut(s) 173, 315
TauI GCSGC 3 cut(s) 21, 164, 181
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 2 cut(s) 57, 96
TspRI CASTG 1 cut(s) 346
XceI RCATGY 2 cut(s) 304, 337
XmnI GAANNNNTTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.