Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

31748128 .. 31752672

Gene Structure 4545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG151900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGAGCTTCTCTGACTTCAATTTCTCCCAAGTTTTCTTCAGCATCGGCAATATTATCCTAAACAAATGCAACCAGATAAGTGACATGAATAGAAAGCGAGAACCAGCGACGCTGGAGAAGGAGCAGCAGGATGGTGTAGCGAAGGTATTGGACAAACATTGCAGGCTTGTTTACACAACTTTCTGTTCCTTCTTTGATAAAAACCGAGCAAAACTGGTGCAAGAAGCTTGGCCGATGGTGGAATCTTCTTTAGAAAAGTATTGCATTTCGTGCACACTTGATCAGGCTGAGCGTTCCATTACATTCTCAACAACCTCAAGGACTAGGGGTCAATTTCTCCTTCTGTTCCAGCAACAAAGTATAAATGCCATACAAATACTGGATGGTCTGCAATACGACATCATCCGGACTGGTTATGATGTGGGGCATTTAGTTTTAGCATTTTCTGGAATTAATGTGGAGAAATATCTTGGACGGCAGAACAGAATTGAACACTCCTTACAGGAACTTGCAAACCAGTCACAGTGTGATGTATTTCTTAATGTAAGGAATATTGTTTTGTTTCACATGATTCGTAGTGATATTGTGTATGTCTTTGGGGACGTTGTGGAAGCCTGCATTGTAAGAAATGTGAAGCCTGCAACTCTGTTCAGGTTGATGAACTTTAGTCGTCAATTGGGTGGACAGTCGGACAATCTTGAGATGGATGTATTAGGGTTTGAAACAGTAACGAAAAGAAAACGGATGGAGGAGAAGAGAAAGAATGATGTTCAGGTTGTCATGTCCGAGCCAACAGCAGCTGCGATGGAGGGGCAGCATGGAGAATTGTCGGATCCATTGGACAAAGCCCTGTTCGGCCCTTCGTTGAACAAAGCTGGCATGCTCGTCTGTGGTGCCTTCTTCTCTGAAAAGCGAGCCAAAGTATTGGAAGAAGAATGGCCCATTGTGGAATCATCCTTGGAACAGTATGGCATTTCATGCACAATTTATCTGGATGAGGGTTTCATGACATTCTCAACAACTAAGGATCGAGATACTATTTACAAGGCTAGAGATGTTCTTGAACTTCTGTCATCGACTTCTGTTAAGCCCTCACTGGCAATAGAAGTACTGAATGGCAGGCTGAAGCATGATATCATCAAGACTGGGTATTTTAATGGTGGGATTGGTTCAGAATTGAAGATTGATAAGGAGACGTTCGTTAAGCAGACTGGACTTTTCAAAGCCTCTTTACAGGGAAACACTGTTGCTGCTCTGGCGACTGAAAATGGACGATTAAGCTTGGTCAGGGAAGTGGTTACACGCTGCATTGCTAGCAATGAGGATCCAGCAAGTATGATCCAGGAGTTTAAAAGAACAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

455

Amino Acids

51.41

Weight (kDa)

6.38

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	61 - 121	6.2e-07	Krr1 KH1 domain
KH_KRR1_1st	PF17903	300 - 370	1.5e-06	Krr1 KH1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	893
AccIII	TCCGGA	1 cut(s)	405
AclWI	GGATC	6 cut(s)	827, 840, 1035, 1319, 1332, 1333
AcoI	YGGCCR	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	22, 1145
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	1110
AgsI	TTSAA	7 cut(s)	19, 491, 722, 868, 1064, 1180, 1222
AhdI	GACNNNNNGTC	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	1341
AluBI	AGCT	5 cut(s)	6, 227, 800, 875, 1281
AluI	AGCT	5 cut(s)	6, 227, 800, 875, 1281
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	1187
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	6 cut(s)	827, 840, 1035, 1319, 1332, 1333
AlwNI	CAGNNNCTG	1 cut(s)	800
Aor13HI	TCCGGA	1 cut(s)	405
AoxI	GGCC	3 cut(s)	230, 856, 938
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	6 cut(s)	124, 797, 800, 814, 1250, 1305
AseI	ATTAAT	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	857, 939
AsuNHI	GCTAGC	1 cut(s)	1313
BaeGI	GKGCMC	1 cut(s)	275
BamHI	GGATCC	2 cut(s)	832, 1324
BanI	GGYRCC	1 cut(s)	893
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	6 cut(s)	136, 787, 809, 826, 1237, 1292
BccI	CCATC	6 cut(s)	125, 229, 377, 697, 739, 799
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	1343
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	1187
BfaI	CTAG	3 cut(s)	324, 1050, 1314
BisI	GCNGC	6 cut(s)	125, 798, 801, 815, 1251, 1306
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	6 cut(s)	126, 799, 802, 816, 1252, 1307
BmcAI	AGTACT	1 cut(s)	1110
Bme1390I	CCNGG	1 cut(s)	1343
BmeRI	GACNNNNNGTC	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	857, 939
BmiI	GGNNCC	3 cut(s)	834, 895, 1326
BmrFI	CCNGG	1 cut(s)	1343
BmrI	ACTGGG	1 cut(s)	1155
BmsI	GCATC	1 cut(s)	51
BmtI	GCTAGC	1 cut(s)	1317
BmuI	ACTGGG	1 cut(s)	1155
BpmI	CTGGAG	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	301, 719
BsaJI	CCNNGG	1 cut(s)	957
BsaWI	WCCGGW	1 cut(s)	405
Bse1I	ACTGG	7 cut(s)	219, 384, 415, 517, 1101, 1150, 1216
Bse3DI	GCAATG	3 cut(s)	157, 1308, 1324
BseAI	TCCGGA	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	1343
BseDI	CCNNGG	1 cut(s)	957
BseGI	GGATG	7 cut(s)	136, 388, 402, 712, 750, 953, 1000
BseMI	GCAATG	3 cut(s)	157, 1308, 1324
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	7 cut(s)	219, 384, 415, 517, 1101, 1150, 1216
BseRI	GAGGAG	1 cut(s)	764
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	6 cut(s)	136, 787, 809, 826, 1237, 1292
BshFI	GGCC	3 cut(s)	232, 858, 940
BshNI	GGYRCC	1 cut(s)	893
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	1187
BsmBI	CGTCTC	1 cut(s)	1187
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	232, 858, 940
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	405
Bsp143I	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
Bsp1720I	GCTNAGC	1 cut(s)	288
BspANI	GGCC	3 cut(s)	232, 858, 940
BspCNI	CTCAG	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	3 cut(s)	834, 895, 1326
BspOI	GCTAGC	1 cut(s)	1317
BspPI	GGATC	6 cut(s)	827, 840, 1035, 1319, 1332, 1333
BspT107I	GGYRCC	1 cut(s)	893
BsrDI	GCAATG	3 cut(s)	157, 1308, 1324
BsrI	ACTGG	7 cut(s)	219, 384, 415, 517, 1101, 1150, 1216
BssECI	CCNNGG	1 cut(s)	957
BssMI	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
BssT1I	CCWWGG	1 cut(s)	957
Bst2UI	CCWGG	1 cut(s)	1343
Bst4CI	ACNGT	5 cut(s)	525, 687, 727, 966, 1246
Bst6I	CTCTTC	1 cut(s)	749
BstAPI	GCANNNNNTGC	2 cut(s)	270, 978
BstC8I	GCNNGC	8 cut(s)	164, 616, 639, 877, 881, 915, 1121, 1315
BstDEI	CTNAG	2 cut(s)	288, 1023
BstF5I	GGATG	7 cut(s)	136, 388, 402, 712, 750, 953, 1000
BstKTI	GATC	5 cut(s)	283, 835, 1030, 1327, 1341
BstMAI	GTCTC	1 cut(s)	1187
BstMBI	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
BstMWI	GCNNNNNNNGC	4 cut(s)	270, 978, 1256, 1314
BstNI	CCWGG	1 cut(s)	1343
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	1 cut(s)	1341
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	6 cut(s)	136, 787, 809, 826, 1237, 1292
BstX2I	RGATCY	2 cut(s)	832, 1324
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstYI	RGATCY	2 cut(s)	832, 1324
BsuRI	GGCC	3 cut(s)	232, 858, 940
BtgZI	GCGATG	1 cut(s)	818
BtsCI	GGATG	7 cut(s)	136, 388, 402, 712, 750, 953, 1000
BtsIMutI	CAGTG	3 cut(s)	530, 1094, 1242
Cac8I	GCNNGC	8 cut(s)	164, 616, 639, 877, 881, 915, 1121, 1315
CaiI	CAGNNNCTG	1 cut(s)	800
CciI	TCATGA	1 cut(s)	1005
Cfr13I	GGNCC	2 cut(s)	857, 939
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	1109
CviAII	CATG	8 cut(s)	85, 568, 781, 818, 880, 978, 1006, 1130
CviQI	GTAC	1 cut(s)	1109
DdeI	CTNAG	2 cut(s)	288, 1023
DpnI	GATC	5 cut(s)	282, 834, 1029, 1326, 1340
DpnII	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
DraI	TTTAAA	1 cut(s)	1351
DraIII	CACNNNGTG	1 cut(s)	527
DriI	GACNNNNNGTC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	749
Eam1105I	GACNNNNNGTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	749
Eco130I	CCWWGG	1 cut(s)	957
Eco32I	GATATC	1 cut(s)	1135
Eco57I	CTGAAG	2 cut(s)	22, 1145
EcoRII	CCWGG	1 cut(s)	1341
EcoRV	GATATC	1 cut(s)	1135
EcoT14I	CCWWGG	1 cut(s)	957
ErhI	CCWWGG	1 cut(s)	957
Esp3I	CGTCTC	1 cut(s)	1187
FaeI	CATG	8 cut(s)	88, 571, 784, 821, 883, 981, 1009, 1133
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	8 cut(s)	84, 567, 780, 817, 879, 977, 1005, 1129
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	6 cut(s)	125, 798, 801, 815, 1251, 1306
FokI	GGATG	7 cut(s)	143, 389, 395, 719, 757, 940, 1007
Fsp4HI	GCNGC	6 cut(s)	125, 798, 801, 815, 1251, 1306
FspBI	CTAG	3 cut(s)	324, 1050, 1314
GluI	GCNGC	6 cut(s)	125, 798, 801, 815, 1251, 1306
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	232, 858, 940
HapII	CCGG	1 cut(s)	406
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	8 cut(s)	88, 571, 784, 821, 883, 981, 1009, 1133
HindIII	AAGCTT	2 cut(s)	225, 1279
HinfI	GANTC	3 cut(s)	242, 571, 950
HpaII	CCGG	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	172, 273, 683
Hpy188I	TCNGA	6 cut(s)	13, 691, 787, 832, 907, 1174
Hpy188III	TCNNGA	8 cut(s)	406, 447, 698, 992, 1006, 1031, 1061, 1141
Hpy8I	GTNNAC	3 cut(s)	172, 273, 683
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	6 cut(s)	112, 136, 199, 350, 870, 907
HpyCH4III	ACNGT	5 cut(s)	525, 687, 727, 966, 1246
HpyCH4IV	ACGT	2 cut(s)	603, 1196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	270, 978, 1256, 1314
HpyF3I	CTNAG	2 cut(s)	288, 1023
HpySE526I	ACGT	2 cut(s)	603, 1196
Hsp92II	CATG	8 cut(s)	88, 571, 784, 821, 883, 981, 1009, 1133
Kpn2I	TCCGGA	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	6 cut(s)	136, 787, 809, 826, 1237, 1292
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	3 cut(s)	324, 1050, 1314
MaeII	ACGT	2 cut(s)	603, 1196
MaeIII	GTNAC	4 cut(s)	80, 519, 727, 1297
MalI	GATC	5 cut(s)	282, 834, 1029, 1326, 1340
MboI	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
MboII	GAAGA	7 cut(s)	28, 237, 766, 892, 941, 944, 1192
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	2 cut(s)	832, 1324
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	8 cut(s)	19, 332, 450, 486, 674, 824, 984, 1175
MmeI	TCCRAC	2 cut(s)	669, 810
MnlI	CCTC	7 cut(s)	325, 742, 802, 991, 1102, 1237, 1315
MroI	TCCGGA	1 cut(s)	405
MseI	TTAA	7 cut(s)	453, 540, 1086, 1155, 1203, 1277, 1350
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	1343
MunI	CAATTG	1 cut(s)	674
MvaI	CCWGG	1 cut(s)	1343
MwoI	GCNNNNNNNGC	4 cut(s)	270, 978, 1256, 1314
NdeII	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
NheI	GCTAGC	1 cut(s)	1313
NlaIII	CATG	8 cut(s)	88, 571, 784, 821, 883, 981, 1009, 1133
NlaIV	GGNNCC	3 cut(s)	834, 895, 1326
NmuCI	GTSAC	2 cut(s)	80, 519
NspI	RCATGY	1 cut(s)	883
PaeI	GCATGC	1 cut(s)	883
PagI	TCATGA	1 cut(s)	1005
PfeI	GAWTC	3 cut(s)	242, 571, 950
PfoI	TCCNGGA	1 cut(s)	1341
PkrI	GCNGC	6 cut(s)	126, 799, 802, 816, 1252, 1307
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	1341
PspGI	CCWGG	1 cut(s)	1341
PspN4I	GGNNCC	3 cut(s)	834, 895, 1326
PspPI	GGNCC	2 cut(s)	857, 939
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	2 cut(s)	832, 1324
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	1 cut(s)	1110
RsaNI	GTAC	1 cut(s)	1109
SaqAI	TTAA	7 cut(s)	453, 540, 1086, 1155, 1203, 1277, 1350
SatI	GCNGC	6 cut(s)	125, 798, 801, 815, 1251, 1306
Sau3AI	GATC	5 cut(s)	280, 832, 1027, 1324, 1338
Sau96I	GGNCC	2 cut(s)	857, 939
ScaI	AGTACT	1 cut(s)	1110
ScrFI	CCNGG	1 cut(s)	1343
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	316, 698
SmoI	CTYRAG	2 cut(s)	316, 698
SphI	GCATGC	1 cut(s)	883
Sse9I	AATT	8 cut(s)	19, 332, 450, 486, 674, 824, 984, 1175
SspI	AATATT	2 cut(s)	52, 553
SspMI	CTAG	3 cut(s)	324, 1050, 1314
StyD4I	CCNGG	1 cut(s)	1341
StyI	CCWWGG	1 cut(s)	957
TaaI	ACNGT	5 cut(s)	525, 687, 727, 966, 1246
TaiI	ACGT	2 cut(s)	606, 1199
TaqI	TCGA	2 cut(s)	1030, 1076
TasI	AATT	8 cut(s)	19, 332, 450, 486, 674, 824, 984, 1175
TatI	WGTACW	1 cut(s)	1108
TfiI	GAWTC	3 cut(s)	242, 571, 950
Tru1I	TTAA	7 cut(s)	453, 540, 1086, 1155, 1203, 1277, 1350
Tru9I	TTAA	7 cut(s)	453, 540, 1086, 1155, 1203, 1277, 1350
TscAI	CASTG	3 cut(s)	530, 1101, 1249
TseFI	GTSAC	2 cut(s)	80, 519
TseI	GCWGC	6 cut(s)	124, 797, 800, 814, 1250, 1305
Tsp45I	GTSAC	2 cut(s)	80, 519
TspDTI	ATGAA	4 cut(s)	101, 674, 966, 994
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	3 cut(s)	530, 1101, 1249
VneI	GTGCAC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	453
XceI	RCATGY	1 cut(s)	883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XspI	CTAG	3 cut(s)	324, 1050, 1314
ZrmI	AGTACT	1 cut(s)	1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.