Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

2019191 .. 2028067

Gene Structure 8877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAAGATCTGCGGAGACAAATGGAAGTCGTCAGACGATATGAAGGCTGTGTTGTCCCGTCCGTCACTCGCATCACGCTTTTCGTTTGGCGAAAGAGTTCCGTGGTGGCTGCACGCAATGACCTTTTCGCCGAGAAAAATAACAACAGAAGGGGCGGCGATGGAGTCGAAGCCGCCGTTGAACAAGGATGGCATGGTTGCTTACACCTCCTTCTCTTCCATGTTTTATCCTGGACGAGCAAAAGTGTTGGCAGAAGAATGGCCCATGGTGGAGTCGGCCTTGGGAGAGTATGGCATGTCATGCAAACTCGATTGGGATGAGAGGGTCATAACAGTGGCAACGACGACAAGGACTAGGGGTGCAGATATTGTTTACAAGGCTAGGGACCTCCTTCATCTTCTGGCATTGACTAATGTTCCACCATCAATGGCCATACAGATACTGGATGGCAGGCTGCATTGTGACATCATCTGGACTGCCAATTGTTACGGTGGTCTTCTCTCTAAACTTTCGTTCAAGAGTAAGGGGCAATATTTTACACGGATGAAAAATATTCGGCGCAACATAGAGGGCCTTGTATCTGTATCCGGTTGCTCCCTCTTCATTAATGGATTTTCTGTCACTGCAATTAGCGCAATTCCTGAAGGACTATTGACGATCAGGGGAATTGTGACATCCTGCATTGTTAAAGGTCAGAATCCTGGAACTGCTGTCAGGTTGTTGAAATTGTTTCAGGAAAGGAATGGACAGACAGAGAATCTCGAGATGGATGCTTATGGGTTCAAAACTGCTCCTGGAGCAAAACTGAGATTCTTGAAGCGATTACGTGGGAACCCATTAGTTGAACAGAAAAATTCGGAGCTTACCCTGACTAGGGGGGATGATGTCGGGGAACTGAAGCCATCCATTGGGAACCCGCGAGTTGAACACAATAAATCGGAGGATGACCCGACACCAGAAGTCAATCAGACAGAGTTTTCTTTATTTGGCCCTTCGTTGAACAAAGATGGAATGCTTGTGTGTGGTTCGTTCTTCCTTGATCATCGAGAAGAAGCCGTTCTAGAAGCTTGGCCACTGTTGAAGTCGCTTTTAGAAGATTATGGCATTTCATGTACAATGTATCTGGCTGAGCGTTTCATGACATTATCAACAACCAGCGGGACTGAAGATCCAGATATTATTTACAAGGCTAGGGATGTTCTTGAACTTTTGTCATTAACTCGTGTTCCACCATCAATGGTACAAATGACAAACTCCGTGTTATTATTTTTCTCCTCTGATAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

429

Amino Acids

47.77

Weight (kDa)

7.54

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	71 - 148	1.1e-10	Krr1 KH1 domain
KH_KRR1_1st	PF17903	345 - 405	4e-12	Krr1 KH1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccII	CGCG	1 cut(s)	919
AciI	CCGC	5 cut(s)	12, 155, 173, 917, 1158
AclWI	GGATC	1 cut(s)	1163
AcoI	YGGCCR	2 cut(s)	429, 1070
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	3 cut(s)	663, 917, 1185
AfaI	GTAC	2 cut(s)	1114, 1242
AfiI	CCNNNNNNNGG	3 cut(s)	873, 874, 908
AjnI	CCWGG	3 cut(s)	229, 700, 793
AluBI	AGCT	2 cut(s)	862, 1067
AluI	AGCT	2 cut(s)	862, 1067
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	1163
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	6 cut(s)	260, 276, 429, 571, 988, 1070
ApeKI	GCWGC	2 cut(s)	109, 454
ApoI	RAATTY	1 cut(s)	853
AseI	ATTAAT	1 cut(s)	606
Asp700I	GAANNNNTTC	2 cut(s)	96, 1056
AspLEI	GCGC	2 cut(s)	561, 635
AspS9I	GGNCC	4 cut(s)	261, 385, 571, 989
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	1 cut(s)	385
BalI	TGGCCA	2 cut(s)	431, 1072
BauI	CACGAG	1 cut(s)	1221
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	96, 441
BccI	CCATC	8 cut(s)	154, 182, 430, 440, 760, 910, 1001, 1240
BceAI	ACGGC	2 cut(s)	160, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	3 cut(s)	231, 702, 795
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	1 cut(s)	1039
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	5 cut(s)	354, 381, 873, 1061, 1191
BfuI	GTATCC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	4 cut(s)	110, 156, 173, 455
BlpI	GCTNAGC	1 cut(s)	1128
BlsI	GCNGC	4 cut(s)	111, 157, 174, 456
Bme1390I	CCNGG	3 cut(s)	231, 702, 795
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	4 cut(s)	261, 385, 571, 989
BmiI	GGNNCC	3 cut(s)	386, 833, 914
BmrFI	CCNGG	3 cut(s)	231, 702, 795
BmsI	GCATC	2 cut(s)	80, 760
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	1128
BsaAI	YACGTR	1 cut(s)	827
BsaJI	CCNNGG	3 cut(s)	101, 264, 279
BsaWI	WCCGGW	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	3 cut(s)	873, 874, 908
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	3 cut(s)	231, 702, 795
BseDI	CCNNGG	3 cut(s)	101, 264, 279
BseLI	CCNNNNNNNGG	3 cut(s)	873, 874, 908
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	797, 1119
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	1264
BseXI	GCAGC	2 cut(s)	96, 441
BsgI	GTGCAG	2 cut(s)	95, 381
Bsh1236I	CGCG	1 cut(s)	919
BshFI	GGCC	6 cut(s)	262, 278, 431, 573, 990, 1072
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	3 cut(s)	40, 398, 1174
BslI	CCNNNNNNNGG	3 cut(s)	873, 874, 908
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	40, 398, 1174
BsmI	GAATGC	1 cut(s)	1017
BsnI	GGCC	6 cut(s)	262, 278, 431, 573, 990, 1072
BsoBI	CYCGRG	1 cut(s)	761
Bsp1407I	TGTACA	1 cut(s)	1112
Bsp143I	GATC	4 cut(s)	6, 657, 1039, 1168
Bsp1720I	GCTNAGC	1 cut(s)	1128
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	5 cut(s)	12, 155, 173, 917, 1158
BspANI	GGCC	6 cut(s)	262, 278, 431, 573, 990, 1072
BspCNI	CTCAG	2 cut(s)	798, 1120
BspFNI	CGCG	1 cut(s)	919
BspHI	TCATGA	1 cut(s)	1137
BspLI	GGNNCC	3 cut(s)	386, 833, 914
BspPI	GGATC	1 cut(s)	1163
BsrDI	GCAATG	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	1112
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	3 cut(s)	101, 264, 279
BssMI	GATC	4 cut(s)	6, 657, 1039, 1168
BssSI	CACGAG	1 cut(s)	1221
BssT1I	CCWWGG	2 cut(s)	264, 279
Bst2BI	CACGAG	1 cut(s)	1221
Bst2UI	CCWGG	3 cut(s)	231, 702, 795
Bst4CI	ACNGT	3 cut(s)	334, 491, 1077
Bst6I	CTCTTC	2 cut(s)	220, 605
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	1112
BstBAI	YACGTR	1 cut(s)	827
BstC8I	GCNNGC	2 cut(s)	114, 452
BstDEI	CTNAG	2 cut(s)	806, 1128
BstDSI	CCRYGG	2 cut(s)	101, 264
BstFNI	CGCG	1 cut(s)	919
BstHHI	GCGC	2 cut(s)	561, 635
BstKTI	GATC	4 cut(s)	9, 660, 1042, 1171
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	6, 657, 1039, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 632, 797
BstNI	CCWGG	3 cut(s)	231, 702, 795
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	3 cut(s)	229, 700, 793
BstUI	CGCG	1 cut(s)	919
BstV1I	GCAGC	2 cut(s)	96, 441
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	6, 1168
BstYI	RGATCY	2 cut(s)	6, 1168
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	6 cut(s)	262, 278, 431, 573, 990, 1072
BtgI	CCRYGG	2 cut(s)	101, 264
BtgZI	GCGATG	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	339, 621, 1073
Cac8I	GCNNGC	2 cut(s)	114, 452
CaiI	CAGNNNCTG	1 cut(s)	442
CciI	TCATGA	1 cut(s)	1137
CfoI	GCGC	2 cut(s)	561, 635
Cfr13I	GGNCC	4 cut(s)	261, 385, 571, 989
Csp6I	GTAC	2 cut(s)	1113, 1241
CviAII	CATG	7 cut(s)	193, 220, 265, 295, 300, 1110, 1138
CviQI	GTAC	2 cut(s)	1113, 1241
DdeI	CTNAG	2 cut(s)	806, 1128
DpnI	GATC	4 cut(s)	8, 659, 1041, 1170
DpnII	GATC	4 cut(s)	6, 657, 1039, 1168
EaeI	YGGCCR	2 cut(s)	429, 1070
Eam1104I	CTCTTC	2 cut(s)	220, 605
EarI	CTCTTC	2 cut(s)	220, 605
Eco130I	CCWWGG	2 cut(s)	264, 279
Eco47I	GGWCC	1 cut(s)	385
Eco57I	CTGAAG	3 cut(s)	663, 917, 1185
Eco88I	CYCGRG	1 cut(s)	761
EcoO109I	RGGNCCY	2 cut(s)	385, 571
EcoRII	CCWGG	3 cut(s)	229, 700, 793
EcoT14I	CCWWGG	2 cut(s)	264, 279
ErhI	CCWWGG	2 cut(s)	264, 279
FaeI	CATG	7 cut(s)	196, 223, 268, 298, 303, 1113, 1141
FaqI	GGGAC	3 cut(s)	40, 398, 1174
FatI	CATG	7 cut(s)	192, 219, 264, 294, 299, 1109, 1137
FauI	CCCGC	2 cut(s)	924, 1151
FbaI	TGATCA	1 cut(s)	1039
Fnu4HI	GCNGC	4 cut(s)	110, 156, 173, 455
Fsp4HI	GCNGC	4 cut(s)	110, 156, 173, 455
FspBI	CTAG	5 cut(s)	354, 381, 873, 1061, 1191
GlaI	GCGC	2 cut(s)	560, 634
GluI	GCNGC	4 cut(s)	110, 156, 173, 455
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	6 cut(s)	262, 278, 431, 573, 990, 1072
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	2 cut(s)	561, 635
Hin1II	CATG	7 cut(s)	196, 223, 268, 298, 303, 1113, 1141
Hin6I	GCGC	2 cut(s)	559, 633
HinP1I	GCGC	2 cut(s)	559, 633
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	5 cut(s)	164, 272, 697, 757, 810
HpaII	CCGG	1 cut(s)	588
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	6 cut(s)	34, 696, 859, 940, 969, 1279
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	6 cut(s)	37, 143, 220, 401, 638, 1002
HpyCH4III	ACNGT	3 cut(s)	334, 491, 1077
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	6 cut(s)	112, 303, 362, 457, 626, 681
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 632, 797
HpyF3I	CTNAG	2 cut(s)	806, 1128
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	7 cut(s)	196, 223, 268, 298, 303, 1113, 1141
HspAI	GCGC	2 cut(s)	559, 633
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	4 cut(s)	6, 657, 1039, 1168
LmnI	GCTCC	4 cut(s)	599, 796, 797, 859
Lsp1109I	GCAGC	2 cut(s)	96, 441
LweI	GCATC	2 cut(s)	80, 760
MaeI	CTAG	5 cut(s)	354, 381, 873, 1061, 1191
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	5 cut(s)	63, 461, 485, 619, 670
MalI	GATC	4 cut(s)	8, 659, 1041, 1170
MboI	GATC	4 cut(s)	6, 657, 1039, 1168
MfeI	CAATTG	1 cut(s)	481
MflI	RGATCY	2 cut(s)	6, 1168
MlsI	TGGCCA	2 cut(s)	431, 1072
MluCI	AATT	6 cut(s)	481, 627, 636, 666, 725, 853
MluNI	TGGCCA	2 cut(s)	431, 1072
MlyI	GAGTC	2 cut(s)	173, 281
MnlI	CCTC	7 cut(s)	217, 315, 398, 562, 608, 934, 1285
Mox20I	TGGCCA	2 cut(s)	431, 1072
MroXI	GAANNNNTTC	2 cut(s)	96, 1056
MscI	TGGCCA	2 cut(s)	431, 1072
MseI	TTAA	3 cut(s)	606, 687, 1217
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	2 cut(s)	431, 1072
MspA1I	CMGCKG	1 cut(s)	1158
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	3 cut(s)	231, 702, 795
MunI	CAATTG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	1017
MvaI	CCWGG	3 cut(s)	231, 702, 795
MvnI	CGCG	1 cut(s)	919
MwoI	GCNNNNNNNGC	3 cut(s)	300, 632, 797
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	6, 657, 1039, 1168
NlaIII	CATG	7 cut(s)	196, 223, 268, 298, 303, 1113, 1141
NlaIV	GGNNCC	3 cut(s)	386, 833, 914
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	4 cut(s)	63, 461, 619, 670
NspI	RCATGY	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	761
PagI	TCATGA	1 cut(s)	1137
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	1 cut(s)	1017
PdmI	GAANNNNTTC	2 cut(s)	96, 1056
PfeI	GAWTC	3 cut(s)	697, 757, 810
PflMI	CCANNNNNTGG	1 cut(s)	908
PfoI	TCCNGGA	3 cut(s)	229, 700, 793
PkrI	GCNGC	4 cut(s)	111, 157, 174, 456
PleI	GAGTC	2 cut(s)	172, 280
PpsI	GAGTC	2 cut(s)	172, 280
Ppu21I	YACGTR	1 cut(s)	827
PpuMI	RGGWCCY	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	229, 700, 793
PspGI	CCWGG	3 cut(s)	229, 700, 793
PspN4I	GGNNCC	3 cut(s)	386, 833, 914
PspPI	GGNCC	4 cut(s)	261, 385, 571, 989
PspPPI	RGGWCCY	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	6, 1168
RsaI	GTAC	2 cut(s)	1114, 1242
RsaNI	GTAC	2 cut(s)	1113, 1241
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	606, 687, 1217
SatI	GCNGC	4 cut(s)	110, 156, 173, 455
Sau3AI	GATC	4 cut(s)	6, 657, 1039, 1168
Sau96I	GGNCC	4 cut(s)	261, 385, 571, 989
SchI	GAGTC	2 cut(s)	173, 281
ScrFI	CCNGG	3 cut(s)	231, 702, 795
SetI	ASST	8 cut(s)	125, 209, 390, 694, 719, 829, 864, 1069
SfaNI	GCATC	2 cut(s)	80, 760
Sfr274I	CTCGAG	1 cut(s)	761
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	6 cut(s)	481, 627, 636, 666, 725, 853
SsiI	CCGC	5 cut(s)	12, 155, 173, 917, 1158
SspI	AATATT	2 cut(s)	533, 553
SspMI	CTAG	5 cut(s)	354, 381, 873, 1061, 1191
StyD4I	CCNGG	3 cut(s)	229, 700, 793
StyI	CCWWGG	2 cut(s)	264, 279
TaaI	ACNGT	3 cut(s)	334, 491, 1077
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	4 cut(s)	167, 309, 762, 1045
TasI	AATT	6 cut(s)	481, 627, 636, 666, 725, 853
TatI	WGTACW	1 cut(s)	1112
TauI	GCSGC	2 cut(s)	158, 175
TfiI	GAWTC	3 cut(s)	697, 757, 810
Tru1I	TTAA	3 cut(s)	606, 687, 1217
Tru9I	TTAA	3 cut(s)	606, 687, 1217
TscAI	CASTG	3 cut(s)	339, 628, 1080
TseFI	GTSAC	4 cut(s)	63, 461, 619, 670
TseI	GCWGC	2 cut(s)	109, 454
Tsp45I	GTSAC	4 cut(s)	63, 461, 619, 670
TspDTI	ATGAA	7 cut(s)	17, 56, 383, 560, 592, 1098, 1126
TspGWI	ACGGA	4 cut(s)	51, 90, 556, 1246
TspRI	CASTG	3 cut(s)	339, 628, 1080
Van91I	CCANNNNNTGG	1 cut(s)	908
VpaK11BI	GGWCC	1 cut(s)	385
VspI	ATTAAT	1 cut(s)	606
XapI	RAATTY	1 cut(s)	853
XbaI	TCTAGA	1 cut(s)	1060
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	761
XmnI	GAANNNNTTC	2 cut(s)	96, 1056
XspI	CTAG	5 cut(s)	354, 381, 873, 1061, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.