Rh7DG027800

rRNA processing

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
2089572 .. 2098448
8877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG027800.1

Sequence Viewer

Length: 1437 bp
ATGAAGATCTGCGGAGACAAATGGAAGTCGTCAGACGATATGAAGGCTGTGTTGTCCCGTCCGTCACTCGCATCACGCTTTTCGTTTGGCGAAAGAGTTCCGTGGTGGCTGCACGCAATGACCTTTTCGCCGAGAAAAATAACAACAGAAGGGGCGGCGATGGAGTCGAAGCCGCCGTTGAACAAGGATGGCATGGTTGCTTACACCTCCTTCTCTTCCATGTTTTATCCTGGACGAGCAAAAGTGTTGGCAGAAGAATGGCCCATGGTGGAGTCGGCCTTGGGAGAGTATGGCATGTCATGCAAACTCGATTGGGATGAGAGGGTCATAACAGTGGCAACGACGACAAGGACTAGGGGTGCAGATATTGTTTACAAGGCTAGGGACCTCCTTCATCTTCTGGCATTGACTAATGTTCCACCATCAATGGCCATACAGATACTGGATGGCAGGCTGCATTGTGACATCATCTGGACTGCCAATTGTTACGGTGGTCTTCTCTCTAAACTTTCGTTCAAGAGTAAGGGGCAATATTTTACACGGATGAAAAATATTCGGCGCAACATAGAGGGCCTTGTATCTGTATCCGGTTGCTCCCTCTTCATTAATGGATTTTCTGTCACTGCAATTAGCGCAATTCCTGAAGGACTATTGACGATCAGGGGAATTGTGACATCCTGCATTGTTAAAGGTCAGAATCCTGGAACTGCTGTCAGGTTGTTGAAATTGTTTCAGGAAAGGAATGGACAGACAGAGAATCTCGAGATGGATGCTTATGGGTTCAAAACTGCTCCTGGAGCAAAACTGAGATTCTTGAAGCGATTACGTGGGAACCCATTAGTTGAACAGAAAAATTCGGAGCTTACCCTGACTAGGGGGGATGATGTCGGGGAACTGAAGCCATCCATTGGGAACCCGCGAGTTGAACACAATAAATCGGAGGATGACCCGACACCAGAAGTCAATCAGACAGAGTTTTCTTTATTTGGCCCTTCGTTGAACAAAGATGGAATGCTTGTGTGTGGTTCGTTCTTCCTTGATCATCGAGAAGAAGCCGTTCTAGAAGCTTGGCCACTGTTGAAGTCGCTTTTAGAAGATTATGGCATTTCATGTACAATGTATCTGGCTGAGCGTTTCATGACATTATCAACAACCAGCGGGACTGAAGATCCAGATATTATTTACAAGGCTAGGGATGTTCTTGAACTTTTGTCATTAACTCGTGTTCCACCATCAATGGTAATGAAAGTACTGAATGAGAATCTGCAACATGACATCATCAAGACTGCGTATCGTAATGGTGGTTTTTGCTCACAATATAAGATTGACAGGAAGCTAATTAAGAAGCGGCGTGGACTACTTCGGCCCTACTTAAAGGAACTTGGGTTGCTGACGGGTTGTGAGATATATGTTGATGTAAGATTACCTCTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

478

Amino Acids

53.58

Weight (kDa)

8.91

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 71 - 148 1.3e-10 Krr1 KH1 domain
KH_KRR1_1st PF17903 345 - 407 2.2e-12 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 908
AccII CGCG 1 cut(s) 919
AciI CCGC 6 cut(s) 12, 155, 173, 917, 1158, 1348
AclWI GGATC 1 cut(s) 1163
AcoI YGGCCR 2 cut(s) 429, 1070
AcsI RAATTY 1 cut(s) 853
AcuI CTGAAG 3 cut(s) 663, 917, 1185
AfaI GTAC 2 cut(s) 1114, 1251
AfiI CCNNNNNNNGG 3 cut(s) 873, 874, 908
AjnI CCWGG 3 cut(s) 229, 700, 793
AluBI AGCT 3 cut(s) 862, 1067, 1336
AluI AGCT 3 cut(s) 862, 1067, 1336
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 1163
AlwNI CAGNNNCTG 1 cut(s) 442
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 7 cut(s) 260, 276, 429, 571, 988, 1070, 1364
ApeKI GCWGC 2 cut(s) 109, 454
ApoI RAATTY 1 cut(s) 853
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 2 cut(s) 96, 1056
AspLEI GCGC 2 cut(s) 561, 635
AspS9I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 2 cut(s) 431, 1072
BauI CACGAG 1 cut(s) 1221
BbsI GAAGAC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 96, 441
BccI CCATC 8 cut(s) 154, 182, 430, 440, 760, 910, 1001, 1240
BceAI ACGGC 2 cut(s) 160, 1040
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 3 cut(s) 231, 702, 795
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 1 cut(s) 1039
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
BfuI GTATCC 1 cut(s) 595
BglII AGATCT 1 cut(s) 6
BisI GCNGC 5 cut(s) 110, 156, 173, 455, 1349
BlpI GCTNAGC 1 cut(s) 1128
BlsI GCNGC 5 cut(s) 111, 157, 174, 456, 1350
BmcAI AGTACT 1 cut(s) 1251
Bme1390I CCNGG 3 cut(s) 231, 702, 795
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
BmiI GGNNCC 3 cut(s) 386, 833, 914
BmrFI CCNGG 3 cut(s) 231, 702, 795
BmsI GCATC 2 cut(s) 80, 760
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 816
Bpu1102I GCTNAGC 1 cut(s) 1128
BsaAI YACGTR 1 cut(s) 827
BsaJI CCNNGG 3 cut(s) 101, 264, 279
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 3 cut(s) 873, 874, 908
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 3 cut(s) 231, 702, 795
BseDI CCNNGG 3 cut(s) 101, 264, 279
BseLI CCNNNNNNNGG 3 cut(s) 873, 874, 908
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 797, 1119
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 96, 441
BsgI GTGCAG 2 cut(s) 95, 381
Bsh1236I CGCG 1 cut(s) 919
BshFI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 1 cut(s) 588
BslFI GGGAC 3 cut(s) 40, 398, 1174
BslI CCNNNNNNNGG 3 cut(s) 873, 874, 908
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 3 cut(s) 40, 398, 1174
BsmI GAATGC 1 cut(s) 1017
BsnI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
BsoBI CYCGRG 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 1112
Bsp143I GATC 4 cut(s) 6, 657, 1039, 1168
Bsp1720I GCTNAGC 1 cut(s) 1128
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 6 cut(s) 12, 155, 173, 917, 1158, 1348
BspANI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
BspCNI CTCAG 2 cut(s) 798, 1120
BspFNI CGCG 1 cut(s) 919
BspHI TCATGA 1 cut(s) 1137
BspLI GGNNCC 3 cut(s) 386, 833, 914
BspPI GGATC 1 cut(s) 1163
BsrDI GCAATG 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 1112
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 3 cut(s) 101, 264, 279
BssMI GATC 4 cut(s) 6, 657, 1039, 1168
BssSI CACGAG 1 cut(s) 1221
BssT1I CCWWGG 2 cut(s) 264, 279
Bst2BI CACGAG 1 cut(s) 1221
Bst2UI CCWGG 3 cut(s) 231, 702, 795
Bst4CI ACNGT 3 cut(s) 334, 491, 1077
Bst6I CTCTTC 2 cut(s) 220, 605
BstAPI GCANNNNNTGC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 1112
BstBAI YACGTR 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 114, 452
BstDEI CTNAG 2 cut(s) 806, 1128
BstDSI CCRYGG 2 cut(s) 101, 264
BstFNI CGCG 1 cut(s) 919
BstHHI GCGC 2 cut(s) 561, 635
BstKTI GATC 4 cut(s) 9, 660, 1042, 1171
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 6, 657, 1039, 1168
BstMWI GCNNNNNNNGC 3 cut(s) 300, 632, 797
BstNI CCWGG 3 cut(s) 231, 702, 795
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 229, 700, 793
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 96, 441
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 2 cut(s) 6, 1168
BstYI RGATCY 2 cut(s) 6, 1168
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
BtgI CCRYGG 2 cut(s) 101, 264
BtgZI GCGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 339, 621, 1073
Cac8I GCNNGC 2 cut(s) 114, 452
CaiI CAGNNNCTG 1 cut(s) 442
CciI TCATGA 1 cut(s) 1137
CfoI GCGC 2 cut(s) 561, 635
Cfr13I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
Csp6I GTAC 2 cut(s) 1113, 1250
CviAII CATG 8 cut(s) 193, 220, 265, 295, 300, 1110, 1138, 1271
CviQI GTAC 2 cut(s) 1113, 1250
DdeI CTNAG 2 cut(s) 806, 1128
DpnI GATC 4 cut(s) 8, 659, 1041, 1170
DpnII GATC 4 cut(s) 6, 657, 1039, 1168
EaeI YGGCCR 2 cut(s) 429, 1070
Eam1104I CTCTTC 2 cut(s) 220, 605
EarI CTCTTC 2 cut(s) 220, 605
Eco130I CCWWGG 2 cut(s) 264, 279
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 3 cut(s) 663, 917, 1185
Eco88I CYCGRG 1 cut(s) 761
EcoO109I RGGNCCY 2 cut(s) 385, 571
EcoRII CCWGG 3 cut(s) 229, 700, 793
EcoT14I CCWWGG 2 cut(s) 264, 279
ErhI CCWWGG 2 cut(s) 264, 279
FaeI CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1274
FaqI GGGAC 3 cut(s) 40, 398, 1174
FatI CATG 8 cut(s) 192, 219, 264, 294, 299, 1109, 1137, 1270
FauI CCCGC 2 cut(s) 924, 1151
FbaI TGATCA 1 cut(s) 1039
Fnu4HI GCNGC 5 cut(s) 110, 156, 173, 455, 1349
Fsp4HI GCNGC 5 cut(s) 110, 156, 173, 455, 1349
FspBI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
GlaI GCGC 2 cut(s) 560, 634
GluI GCNGC 5 cut(s) 110, 156, 173, 455, 1349
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 7 cut(s) 262, 278, 431, 573, 990, 1072, 1366
HapII CCGG 1 cut(s) 588
HhaI GCGC 2 cut(s) 561, 635
Hin1II CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1274
Hin6I GCGC 2 cut(s) 559, 633
HinP1I GCGC 2 cut(s) 559, 633
HindIII AAGCTT 1 cut(s) 1065
HinfI GANTC 6 cut(s) 164, 272, 697, 757, 810, 1261
HpaII CCGG 1 cut(s) 588
Hpy166II GTNNAC 2 cut(s) 373, 1355
Hpy188I TCNGA 5 cut(s) 34, 696, 859, 940, 969
Hpy8I GTNNAC 2 cut(s) 373, 1355
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 6 cut(s) 37, 143, 220, 401, 638, 1002
HpyCH4III ACNGT 3 cut(s) 334, 491, 1077
HpyCH4IV ACGT 1 cut(s) 826
HpyCH4V TGCA 7 cut(s) 112, 303, 362, 457, 626, 681, 1267
HpyF10VI GCNNNNNNNGC 3 cut(s) 300, 632, 797
HpyF3I CTNAG 2 cut(s) 806, 1128
HpySE526I ACGT 1 cut(s) 826
Hsp92II CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1274
HspAI GCGC 2 cut(s) 559, 633
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 4 cut(s) 6, 657, 1039, 1168
LmnI GCTCC 4 cut(s) 599, 796, 797, 859
Lsp1109I GCAGC 2 cut(s) 96, 441
LweI GCATC 2 cut(s) 80, 760
MaeI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
MaeII ACGT 1 cut(s) 826
MaeIII GTNAC 5 cut(s) 63, 461, 485, 619, 670
MalI GATC 4 cut(s) 8, 659, 1041, 1170
MboI GATC 4 cut(s) 6, 657, 1039, 1168
MfeI CAATTG 1 cut(s) 481
MflI RGATCY 2 cut(s) 6, 1168
MlsI TGGCCA 2 cut(s) 431, 1072
MluCI AATT 7 cut(s) 481, 627, 636, 666, 725, 853, 1338
MluNI TGGCCA 2 cut(s) 431, 1072
MlyI GAGTC 2 cut(s) 173, 281
MnlI CCTC 7 cut(s) 217, 315, 398, 562, 608, 934, 1437
Mox20I TGGCCA 2 cut(s) 431, 1072
MroXI GAANNNNTTC 2 cut(s) 96, 1056
MscI TGGCCA 2 cut(s) 431, 1072
MseI TTAA 5 cut(s) 606, 687, 1217, 1341, 1373
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 2 cut(s) 431, 1072
MspA1I CMGCKG 1 cut(s) 1158
MspI CCGG 1 cut(s) 588
MspR9I CCNGG 3 cut(s) 231, 702, 795
MunI CAATTG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 1017
MvaI CCWGG 3 cut(s) 231, 702, 795
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 3 cut(s) 300, 632, 797
NcoI CCATGG 1 cut(s) 264
NdeII GATC 4 cut(s) 6, 657, 1039, 1168
NlaIII CATG 8 cut(s) 196, 223, 268, 298, 303, 1113, 1141, 1274
NlaIV GGNNCC 3 cut(s) 386, 833, 914
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 4 cut(s) 63, 461, 619, 670
NspI RCATGY 1 cut(s) 298
PaeR7I CTCGAG 1 cut(s) 761
PagI TCATGA 1 cut(s) 1137
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PctI GAATGC 1 cut(s) 1017
PdmI GAANNNNTTC 2 cut(s) 96, 1056
PfeI GAWTC 4 cut(s) 697, 757, 810, 1261
PflMI CCANNNNNTGG 1 cut(s) 908
PfoI TCCNGGA 3 cut(s) 229, 700, 793
PkrI GCNGC 5 cut(s) 111, 157, 174, 456, 1350
PleI GAGTC 2 cut(s) 172, 280
PpsI GAGTC 2 cut(s) 172, 280
Ppu21I YACGTR 1 cut(s) 827
PpuMI RGGWCCY 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 229, 700, 793
PspGI CCWGG 3 cut(s) 229, 700, 793
PspN4I GGNNCC 3 cut(s) 386, 833, 914
PspPI GGNCC 5 cut(s) 261, 385, 571, 989, 1365
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 442
PsuI RGATCY 2 cut(s) 6, 1168
RsaI GTAC 2 cut(s) 1114, 1251
RsaNI GTAC 2 cut(s) 1113, 1250
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 5 cut(s) 606, 687, 1217, 1341, 1373
SatI GCNGC 5 cut(s) 110, 156, 173, 455, 1349
Sau3AI GATC 4 cut(s) 6, 657, 1039, 1168
Sau96I GGNCC 5 cut(s) 261, 385, 571, 989, 1365
ScaI AGTACT 1 cut(s) 1251
SchI GAGTC 2 cut(s) 173, 281
ScrFI CCNGG 3 cut(s) 231, 702, 795
SfaNI GCATC 2 cut(s) 80, 760
Sfr274I CTCGAG 1 cut(s) 761
SinI GGWCC 1 cut(s) 385
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 7 cut(s) 481, 627, 636, 666, 725, 853, 1338
SsiI CCGC 6 cut(s) 12, 155, 173, 917, 1158, 1348
SspI AATATT 2 cut(s) 533, 553
SspMI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
StyD4I CCNGG 3 cut(s) 229, 700, 793
StyI CCWWGG 2 cut(s) 264, 279
TaaI ACNGT 3 cut(s) 334, 491, 1077
TaiI ACGT 1 cut(s) 829
TaqI TCGA 4 cut(s) 167, 309, 762, 1045
TasI AATT 7 cut(s) 481, 627, 636, 666, 725, 853, 1338
TatI WGTACW 2 cut(s) 1112, 1249
TauI GCSGC 3 cut(s) 158, 175, 1351
TfiI GAWTC 4 cut(s) 697, 757, 810, 1261
Tru1I TTAA 5 cut(s) 606, 687, 1217, 1341, 1373
Tru9I TTAA 5 cut(s) 606, 687, 1217, 1341, 1373
TscAI CASTG 3 cut(s) 339, 628, 1080
TseFI GTSAC 4 cut(s) 63, 461, 619, 670
TseI GCWGC 2 cut(s) 109, 454
Tsp45I GTSAC 4 cut(s) 63, 461, 619, 670
TspDTI ATGAA 8 cut(s) 17, 56, 383, 560, 592, 1098, 1126, 1259
TspGWI ACGGA 3 cut(s) 51, 90, 556
TspRI CASTG 3 cut(s) 339, 628, 1080
Van91I CCANNNNNTGG 1 cut(s) 908
VpaK11BI GGWCC 1 cut(s) 385
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 1 cut(s) 853
XbaI TCTAGA 1 cut(s) 1060
XceI RCATGY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 761
XmnI GAANNNNTTC 2 cut(s) 96, 1056
XspI CTAG 5 cut(s) 354, 381, 873, 1061, 1191
ZrmI AGTACT 1 cut(s) 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.