rRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g00670 FvH4_2g01170 |
| rosa_chinensis | RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051 |
| rosa_laevigata | RLG00000004479 RLG00000005327 |
| rosa_multiflora | Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001 |
| rosa_roxburghii | Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520 |
| rosa_rugosa | Rorug06G0427500 Rorug06G0427600 Rorug06G0508400 |
| rosa_samantha | Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900 |
| rosa_wichuraiana | Rw7G002180 Rw7G010110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 111, 273 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AgsI | TTSAA | 3 cut(s) | 17, 208, 250 |
| AluBI | AGCT | 2 cut(s) | 95, 357 |
| AluI | AGCT | 2 cut(s) | 95, 357 |
| Alw26I | GTCTC | 1 cut(s) | 215 |
| AlwI | GGATC | 2 cut(s) | 111, 273 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 95 |
| ApeKI | GCWGC | 4 cut(s) | 92, 95, 113, 354 |
| AxyI | CCTNAGG | 1 cut(s) | 7 |
| BbvI | GCAGC | 4 cut(s) | 82, 104, 125, 366 |
| BccI | CCATC | 1 cut(s) | 94 |
| BcoDI | GTCTC | 1 cut(s) | 215 |
| BisI | GCNGC | 4 cut(s) | 93, 96, 114, 355 |
| BlsI | GCNGC | 4 cut(s) | 94, 97, 115, 356 |
| BmrI | ACTGGG | 1 cut(s) | 183 |
| BmuI | ACTGGG | 1 cut(s) | 183 |
| Bse1I | ACTGG | 2 cut(s) | 178, 244 |
| Bse21I | CCTNAGG | 1 cut(s) | 7 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseNI | ACTGG | 2 cut(s) | 178, 244 |
| BseRI | GAGGAG | 1 cut(s) | 59 |
| BseXI | GCAGC | 4 cut(s) | 82, 104, 125, 366 |
| BsmAI | GTCTC | 1 cut(s) | 215 |
| BsmBI | CGTCTC | 1 cut(s) | 215 |
| BsmI | GAATGC | 1 cut(s) | 339 |
| Bsp143I | GATC | 3 cut(s) | 103, 265, 346 |
| BspCNI | CTCAG | 1 cut(s) | 212 |
| BspPI | GGATC | 2 cut(s) | 111, 273 |
| BsrI | ACTGG | 2 cut(s) | 178, 244 |
| BssMI | GATC | 3 cut(s) | 103, 265, 346 |
| Bst4CI | ACNGT | 1 cut(s) | 22 |
| Bst6I | CTCTTC | 1 cut(s) | 44 |
| BstC8I | GCNNGC | 1 cut(s) | 149 |
| BstDEI | CTNAG | 4 cut(s) | 7, 199, 350, 393 |
| BstKTI | GATC | 3 cut(s) | 106, 268, 349 |
| BstMAI | GTCTC | 1 cut(s) | 215 |
| BstMBI | GATC | 3 cut(s) | 103, 265, 346 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 134 |
| BstV1I | GCAGC | 4 cut(s) | 82, 104, 125, 366 |
| BstX2I | RGATCY | 1 cut(s) | 265 |
| BstYI | RGATCY | 1 cut(s) | 265 |
| Bsu36I | CCTNAGG | 1 cut(s) | 7 |
| BtgZI | GCGATG | 1 cut(s) | 113 |
| Cac8I | GCNNGC | 1 cut(s) | 149 |
| CaiI | CAGNNNCTG | 1 cut(s) | 95 |
| CviAII | CATG | 4 cut(s) | 68, 76, 117, 158 |
| CviJI | RGCY | 6 cut(s) | 85, 95, 151, 198, 254, 357 |
| CviKI_1 | RGCY | 6 cut(s) | 85, 95, 151, 198, 254, 357 |
| DdeI | CTNAG | 4 cut(s) | 7, 199, 350, 393 |
| DpnI | GATC | 3 cut(s) | 105, 267, 348 |
| DpnII | GATC | 3 cut(s) | 103, 265, 346 |
| Eam1104I | CTCTTC | 1 cut(s) | 44 |
| EarI | CTCTTC | 1 cut(s) | 44 |
| Eco32I | GATATC | 1 cut(s) | 163 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| Eco81I | CCTNAGG | 1 cut(s) | 7 |
| EcoRV | GATATC | 1 cut(s) | 163 |
| Esp3I | CGTCTC | 1 cut(s) | 215 |
| FaeI | CATG | 4 cut(s) | 71, 79, 120, 161 |
| FaiI | YATR | 7 cut(s) | 69, 77, 118, 159, 291, 297, 377 |
| FatI | CATG | 4 cut(s) | 67, 75, 116, 157 |
| Fnu4HI | GCNGC | 4 cut(s) | 93, 96, 114, 355 |
| Fsp4HI | GCNGC | 4 cut(s) | 93, 96, 114, 355 |
| GluI | GCNGC | 4 cut(s) | 93, 96, 114, 355 |
| Hin1II | CATG | 4 cut(s) | 71, 79, 120, 161 |
| HinfI | GANTC | 3 cut(s) | 123, 325, 379 |
| Hpy188I | TCNGA | 5 cut(s) | 82, 202, 330, 361, 384 |
| Hpy188III | TCNNGA | 2 cut(s) | 169, 344 |
| HpyCH4III | ACNGT | 1 cut(s) | 22 |
| HpyCH4IV | ACGT | 2 cut(s) | 224, 332 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 134 |
| HpyF3I | CTNAG | 4 cut(s) | 7, 199, 350, 393 |
| HpySE526I | ACGT | 2 cut(s) | 224, 332 |
| Hsp92II | CATG | 4 cut(s) | 71, 79, 120, 161 |
| Kzo9I | GATC | 3 cut(s) | 103, 265, 346 |
| LpnPI | CCDG | 5 cut(s) | 133, 159, 225, 248, 357 |
| Lsp1109I | GCAGC | 4 cut(s) | 82, 104, 125, 366 |
| MaeII | ACGT | 2 cut(s) | 224, 332 |
| MaeIII | GTNAC | 2 cut(s) | 22, 308 |
| MalI | GATC | 3 cut(s) | 105, 267, 348 |
| MboI | GATC | 3 cut(s) | 103, 265, 346 |
| MboII | GAAGA | 2 cut(s) | 61, 220 |
| MflI | RGATCY | 1 cut(s) | 265 |
| MluCI | AATT | 2 cut(s) | 203, 372 |
| MmeI | TCCRAC | 1 cut(s) | 349 |
| MnlI | CCTC | 4 cut(s) | 37, 101, 265, 323 |
| MseI | TTAA | 3 cut(s) | 141, 183, 231 |
| MspA1I | CMGCKG | 1 cut(s) | 95 |
| Mva1269I | GAATGC | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 134 |
| NdeII | GATC | 3 cut(s) | 103, 265, 346 |
| NlaIII | CATG | 4 cut(s) | 71, 79, 120, 161 |
| PctI | GAATGC | 1 cut(s) | 339 |
| PfeI | GAWTC | 3 cut(s) | 123, 325, 379 |
| PkrI | GCNGC | 4 cut(s) | 94, 97, 115, 356 |
| PstNI | CAGNNNCTG | 1 cut(s) | 95 |
| PsuI | RGATCY | 1 cut(s) | 265 |
| PvuII | CAGCTG | 1 cut(s) | 95 |
| SaqAI | TTAA | 3 cut(s) | 141, 183, 231 |
| SatI | GCNGC | 4 cut(s) | 93, 96, 114, 355 |
| Sau3AI | GATC | 3 cut(s) | 103, 265, 346 |
| SetI | ASST | 6 cut(s) | 8, 97, 227, 315, 335, 359 |
| Sse9I | AATT | 2 cut(s) | 203, 372 |
| TaaI | ACNGT | 1 cut(s) | 22 |
| TaiI | ACGT | 2 cut(s) | 227, 335 |
| TaqI | TCGA | 1 cut(s) | 106 |
| TasI | AATT | 2 cut(s) | 203, 372 |
| TfiI | GAWTC | 3 cut(s) | 123, 325, 379 |
| Tru1I | TTAA | 3 cut(s) | 141, 183, 231 |
| Tru9I | TTAA | 3 cut(s) | 141, 183, 231 |
| TseI | GCWGC | 4 cut(s) | 92, 95, 113, 354 |
| TspDTI | ATGAA | 3 cut(s) | 56, 378, 392 |
| TspGWI | ACGGA | 2 cut(s) | 52, 56 |