RchiOBHm_Chr7g0191051

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003458
Physical Location & Seq
Forward (+)
9925436 .. 9928074
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17070

Sequence Viewer

Length: 729 bp
ATGAACTTTAGTCATCAATTGGGTGGACAGTCGGACAATCTTGAGATGGATGTATTAGGGTTTGAAACAGTAACGAAAAGAAAACGGACGGAGGAGAAGAGAAAGAATGATGTTCATGTTGTCATGTCCGAGCCAACAGCAGCTGCGATGGAGGGGCAGCATGGAGAATCGTCGGATCCATTGGACAAAGCCCTGTTCGGCCCTTCGTTGAACAAAGCTGGCATGCTCGTCTGTGGTGCCTTCTTCTCTGAAAAGCGAGCCAAAGTATTGGAAGAAGAATGGCCCATTGTGGAATCATCCTTGGAACAGTATGGCATTTCATGCACAATTTATCTGGATGAGGGTTTCATGACATTCTCAACAACTAAGGATCGAGATACTATTTACAAGGCTAGAGATGTTCTTGAACTTCTGTCATCGACTTCTGTTAAGCCCTCACTGGCAATAGAAGTACTGAATGGCAGGCTGAAGCATGATATCATCAAGACTGGGTATTTTAATGGTGGGATTGGTTCAGAATTGAAGATTGATAAGGAGACGTTCGTTAAGCAGACTGGACTTTTCAAAGCCTCTTTACAGGATGTTGCTGATGTGTCGCATTGTTATATTTATACCAATGCAAGTTACCTCCCTTTTGTGATTCGGAGGTTTGGCATTCCTGATCTTAGCAGCTCTGATGAAGTTGGAATTTTGAATCTGATAATATCTAATTTACGTGTTAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.93

Weight (kDa)

5.26

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 81 - 151 5.1e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AclWI GGATC 3 cut(s) 170, 183, 378
AcsI RAATTY 1 cut(s) 687
AcuI CTGAAG 1 cut(s) 488
AfaI GTAC 1 cut(s) 453
AflIII ACRYGT 1 cut(s) 715
AgsI TTSAA 6 cut(s) 65, 211, 407, 523, 565, 694
AluBI AGCT 3 cut(s) 143, 218, 672
AluI AGCT 3 cut(s) 143, 218, 672
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 3 cut(s) 170, 183, 378
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 2 cut(s) 199, 281
ApeKI GCWGC 4 cut(s) 140, 143, 157, 669
ApoI RAATTY 1 cut(s) 687
AspS9I GGNCC 2 cut(s) 200, 282
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 130, 152, 169, 681
BccI CCATC 2 cut(s) 40, 142
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 393
BisI GCNGC 4 cut(s) 141, 144, 158, 670
BlsI GCNGC 4 cut(s) 142, 145, 159, 671
BmcAI AGTACT 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 200, 282
BmiI GGNNCC 2 cut(s) 177, 238
BmrI ACTGGG 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 716
BsaJI CCNNGG 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 444, 493, 559
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 4 cut(s) 55, 296, 343, 586
BseNI ACTGG 3 cut(s) 444, 493, 559
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 4 cut(s) 130, 152, 169, 681
BshFI GGCC 2 cut(s) 201, 283
BshNI GGYRCC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 530
BsmBI CGTCTC 1 cut(s) 530
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 2 cut(s) 201, 283
Bsp143I GATC 3 cut(s) 175, 370, 661
BspANI GGCC 2 cut(s) 201, 283
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 177, 238
BspPI GGATC 3 cut(s) 170, 183, 378
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 3 cut(s) 444, 493, 559
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 175, 370, 661
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 30, 70, 309
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 716
BstC8I GCNNGC 4 cut(s) 220, 224, 258, 464
BstDEI CTNAG 2 cut(s) 366, 665
BstF5I GGATG 4 cut(s) 55, 296, 343, 586
BstKTI GATC 3 cut(s) 178, 373, 664
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 3 cut(s) 175, 370, 661
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 226
BstV1I GCAGC 4 cut(s) 130, 152, 169, 681
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 2 cut(s) 201, 283
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 4 cut(s) 55, 296, 343, 586
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 220, 224, 258, 464
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 200, 282
Csp6I GTAC 1 cut(s) 452
CviAII CATG 7 cut(s) 116, 124, 161, 223, 321, 349, 473
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 2 cut(s) 366, 665
DpnI GATC 3 cut(s) 177, 372, 663
DpnII GATC 3 cut(s) 175, 370, 661
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 300
Eco32I GATATC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 530
FaeI CATG 7 cut(s) 119, 127, 164, 226, 324, 352, 476
FatI CATG 7 cut(s) 115, 123, 160, 222, 320, 348, 472
Fnu4HI GCNGC 4 cut(s) 141, 144, 158, 670
FokI GGATG 4 cut(s) 62, 283, 350, 593
Fsp4HI GCNGC 4 cut(s) 141, 144, 158, 670
FspBI CTAG 1 cut(s) 393
GluI GCNGC 4 cut(s) 141, 144, 158, 670
HaeIII GGCC 2 cut(s) 201, 283
Hin1II CATG 7 cut(s) 119, 127, 164, 226, 324, 352, 476
HinfI GANTC 4 cut(s) 167, 293, 640, 694
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 8 cut(s) 34, 130, 175, 250, 517, 645, 676, 699
Hpy188III TCNNGA 7 cut(s) 41, 335, 349, 374, 404, 484, 659
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 213, 250
HpyCH4III ACNGT 3 cut(s) 30, 70, 309
HpyCH4IV ACGT 2 cut(s) 539, 715
HpyCH4V TGCA 2 cut(s) 324, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 2 cut(s) 366, 665
HpySE526I ACGT 2 cut(s) 539, 715
Hsp92II CATG 7 cut(s) 119, 127, 164, 226, 324, 352, 476
Kzo9I GATC 3 cut(s) 175, 370, 661
LpnPI CCDG 9 cut(s) 204, 206, 320, 425, 448, 474, 540, 563, 672
Lsp1109I GCAGC 4 cut(s) 130, 152, 169, 681
MaeI CTAG 1 cut(s) 393
MaeII ACGT 2 cut(s) 539, 715
MaeIII GTNAC 2 cut(s) 70, 623
MalI GATC 3 cut(s) 177, 372, 663
MboI GATC 3 cut(s) 175, 370, 661
MboII GAAGA 5 cut(s) 109, 235, 284, 287, 535
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 1 cut(s) 175
MluCI AATT 5 cut(s) 17, 327, 518, 687, 709
MmeI TCCRAC 3 cut(s) 12, 153, 664
MnlI CCTC 7 cut(s) 85, 145, 334, 445, 580, 638, 639
MseI TTAA 4 cut(s) 429, 498, 546, 720
MspA1I CMGCKG 1 cut(s) 143
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 3 cut(s) 175, 370, 661
NlaIII CATG 7 cut(s) 119, 127, 164, 226, 324, 352, 476
NlaIV GGNNCC 2 cut(s) 177, 238
NspI RCATGY 1 cut(s) 226
PaeI GCATGC 1 cut(s) 226
PagI TCATGA 1 cut(s) 348
PctI GAATGC 1 cut(s) 654
PfeI GAWTC 4 cut(s) 167, 293, 640, 694
PkrI GCNGC 4 cut(s) 142, 145, 159, 671
Ppu21I YACGTR 1 cut(s) 716
PspN4I GGNNCC 2 cut(s) 177, 238
PspPI GGNCC 2 cut(s) 200, 282
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SaqAI TTAA 4 cut(s) 429, 498, 546, 720
SatI GCNGC 4 cut(s) 141, 144, 158, 670
Sau3AI GATC 3 cut(s) 175, 370, 661
Sau96I GGNCC 2 cut(s) 200, 282
ScaI AGTACT 1 cut(s) 453
SetI ASST 7 cut(s) 145, 220, 542, 630, 650, 674, 718
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 226
Sse9I AATT 5 cut(s) 17, 327, 518, 687, 709
SspMI CTAG 1 cut(s) 393
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 30, 70, 309
TaiI ACGT 2 cut(s) 542, 718
TaqI TCGA 2 cut(s) 373, 419
TasI AATT 5 cut(s) 17, 327, 518, 687, 709
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 4 cut(s) 167, 293, 640, 694
Tru1I TTAA 4 cut(s) 429, 498, 546, 720
Tru9I TTAA 4 cut(s) 429, 498, 546, 720
TscAI CASTG 1 cut(s) 444
TseI GCWGC 4 cut(s) 140, 143, 157, 669
TspDTI ATGAA 5 cut(s) 17, 104, 309, 337, 693
TspGWI ACGGA 2 cut(s) 100, 104
TspRI CASTG 1 cut(s) 444
XapI RAATTY 1 cut(s) 687
XceI RCATGY 1 cut(s) 226
XspI CTAG 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.