Rh7DG119200

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003458
Physical Location & Seq
Forward (+)
10067094 .. 10069907
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG119200.1

Sequence Viewer

Length: 873 bp
ATGGTGGGTTTCGCTGAAGACTACCACTTGAGGAGCAGGAGAAATATCTTGGACGGCAGAAAAGAATTGAACACTCCTTACAGGAACTTGCAAACCAGTCACAGTGTGATGTATTTCTTAATGGACGTTGTGGAAGCCTGCATTGTAAGAAATGTGAAGCCTGCAACTCTGTTCAGGTTGATGAACTTTAGTCATCAATTGGGTGGACAGTCGGACAATCTTGAGATGGATGTATTAGGGTTTGAAACAGTAACGAAAAGAAAACGGACGGAGGAGAAGAGAAAGAATGATGTTCATGTTGTCATGTCCGAGCCAACAGCAGCTGCGATGGAGGGGCAGCATGGAGAATCGTCGGATCCATTGGACAAAGCCCTGTTCGGCCCTTCGTTGAACAAAGCTGGCATGCTCGTCTGTGGTGCCTTCTTCTCTGAAAAGCGAGCCAAAGTATTGGAAGAAGAATGGCCCATTGTGGAATCATCCTTGGAACAGTATGGCATTTCATGCACAATTTATCTGGATGAGGGTTTCATGACATTCTCAACAACTAAGGATCGAGATACTATTTACAAGGCTAGAGATGTTCTTGAACTTCTGTCATCGACTTCTGTTAAGCCCTCACTGGCAATAGAAGTACTGAATGGCAGGCTGAAGCATGATATCATCAAGACTGGGTATTTTAATGGTGGGATTGGTTCAGAATTGAAGACTGATAAGGAGACGTTCGTTAAGCAGACTGGACTTTTCAAAGCCTCTTTACAGGATGTTGCTGATGTGTCGCATTGTTATATTTATACCAATGCAAGTTACCTCCCTTTTGTGATTCGGAGGGGAACAGTACTGTTGCTGCTCTGGCGACTGAAAATGGACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

32.84

Weight (kDa)

6.41

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 141 - 211 7.1e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AclWI GGATC 3 cut(s) 350, 363, 558
AcuI CTGAAG 2 cut(s) 36, 668
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 2 cut(s) 633, 837
AgsI TTSAA 6 cut(s) 70, 245, 391, 587, 703, 745
AluBI AGCT 2 cut(s) 323, 398
AluI AGCT 2 cut(s) 323, 398
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 3 cut(s) 350, 363, 558
AlwNI CAGNNNCTG 1 cut(s) 323
AoxI GGCC 2 cut(s) 379, 461
ApeKI GCWGC 4 cut(s) 320, 323, 337, 844
AspS9I GGNCC 2 cut(s) 380, 462
BamHI GGATCC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 416
BbsI GAAGAC 2 cut(s) 24, 710
BbvI GCAGC 4 cut(s) 310, 332, 349, 831
BccI CCATC 2 cut(s) 220, 322
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 710
BfaI CTAG 1 cut(s) 573
BisI GCNGC 4 cut(s) 321, 324, 338, 845
BlsI GCNGC 4 cut(s) 322, 325, 339, 846
BmcAI AGTACT 2 cut(s) 633, 837
BmgT120I GGNCC 2 cut(s) 380, 462
BmiI GGNNCC 2 cut(s) 357, 418
BmrI ACTGGG 1 cut(s) 678
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 2 cut(s) 24, 710
BpuEI CTTGAG 2 cut(s) 49, 242
BsaJI CCNNGG 1 cut(s) 480
Bse1I ACTGG 4 cut(s) 96, 624, 673, 739
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 4 cut(s) 235, 476, 523, 766
BseNI ACTGG 4 cut(s) 96, 624, 673, 739
BseRI GAGGAG 2 cut(s) 46, 287
BseXI GCAGC 4 cut(s) 310, 332, 349, 831
BshFI GGCC 2 cut(s) 381, 463
BshNI GGYRCC 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 710
BsmBI CGTCTC 1 cut(s) 710
BsnI GGCC 2 cut(s) 381, 463
Bsp143I GATC 2 cut(s) 355, 550
BspANI GGCC 2 cut(s) 381, 463
BspHI TCATGA 1 cut(s) 528
BspLI GGNNCC 2 cut(s) 357, 418
BspPI GGATC 3 cut(s) 350, 363, 558
BspT107I GGYRCC 1 cut(s) 416
BsrI ACTGG 4 cut(s) 96, 624, 673, 739
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 2 cut(s) 355, 550
BssT1I CCWWGG 1 cut(s) 480
Bst4CI ACNGT 6 cut(s) 104, 210, 250, 489, 835, 840
Bst6I CTCTTC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 501
BstC8I GCNNGC 6 cut(s) 139, 162, 400, 404, 438, 644
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 4 cut(s) 235, 476, 523, 766
BstKTI GATC 2 cut(s) 358, 553
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 2 cut(s) 355, 550
BstMWI GCNNNNNNNGC 2 cut(s) 501, 850
BstNSI RCATGY 1 cut(s) 406
BstV1I GCAGC 4 cut(s) 310, 332, 349, 831
BstV2I GAAGAC 2 cut(s) 24, 710
BstX2I RGATCY 1 cut(s) 355
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 2 cut(s) 381, 463
BtgZI GCGATG 1 cut(s) 341
BtsCI GGATG 4 cut(s) 235, 476, 523, 766
BtsIMutI CAGTG 2 cut(s) 109, 617
Cac8I GCNNGC 6 cut(s) 139, 162, 400, 404, 438, 644
CaiI CAGNNNCTG 1 cut(s) 323
CciI TCATGA 1 cut(s) 528
Cfr13I GGNCC 2 cut(s) 380, 462
Csp6I GTAC 2 cut(s) 632, 836
CviAII CATG 7 cut(s) 296, 304, 341, 403, 501, 529, 653
CviQI GTAC 2 cut(s) 632, 836
DdeI CTNAG 1 cut(s) 546
DpnI GATC 2 cut(s) 357, 552
DpnII GATC 2 cut(s) 355, 550
DraIII CACNNNGTG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 480
Eco32I GATATC 1 cut(s) 658
Eco57I CTGAAG 2 cut(s) 36, 668
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 7 cut(s) 299, 307, 344, 406, 504, 532, 656
FatI CATG 7 cut(s) 295, 303, 340, 402, 500, 528, 652
Fnu4HI GCNGC 4 cut(s) 321, 324, 338, 845
FokI GGATG 4 cut(s) 242, 463, 530, 773
Fsp4HI GCNGC 4 cut(s) 321, 324, 338, 845
FspBI CTAG 1 cut(s) 573
GluI GCNGC 4 cut(s) 321, 324, 338, 845
HaeIII GGCC 2 cut(s) 381, 463
Hin1II CATG 7 cut(s) 299, 307, 344, 406, 504, 532, 656
HinfI GANTC 3 cut(s) 347, 473, 820
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 6 cut(s) 214, 310, 355, 430, 697, 825
Hpy188III TCNNGA 6 cut(s) 221, 515, 529, 554, 584, 664
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 2 cut(s) 393, 430
HpyCH4III ACNGT 6 cut(s) 104, 210, 250, 489, 835, 840
HpyCH4IV ACGT 2 cut(s) 126, 719
HpyCH4V TGCA 5 cut(s) 91, 141, 164, 504, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 850
HpyF3I CTNAG 1 cut(s) 546
HpySE526I ACGT 2 cut(s) 126, 719
Hsp92II CATG 7 cut(s) 299, 307, 344, 406, 504, 532, 656
Kzo9I GATC 2 cut(s) 355, 550
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 4 cut(s) 310, 332, 349, 831
MaeI CTAG 1 cut(s) 573
MaeII ACGT 2 cut(s) 126, 719
MaeIII GTNAC 3 cut(s) 98, 250, 803
MalI GATC 2 cut(s) 357, 552
MboI GATC 2 cut(s) 355, 550
MboII GAAGA 6 cut(s) 29, 289, 415, 464, 467, 715
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 1 cut(s) 355
MluCI AATT 4 cut(s) 65, 197, 507, 698
MmeI TCCRAC 2 cut(s) 192, 333
MnlI CCTC 8 cut(s) 24, 265, 325, 514, 625, 760, 818, 819
MseI TTAA 5 cut(s) 119, 609, 678, 726, 871
MspA1I CMGCKG 1 cut(s) 323
MunI CAATTG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 501, 850
NdeII GATC 2 cut(s) 355, 550
NlaIII CATG 7 cut(s) 299, 307, 344, 406, 504, 532, 656
NlaIV GGNNCC 2 cut(s) 357, 418
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 406
PaeI GCATGC 1 cut(s) 406
PagI TCATGA 1 cut(s) 528
PfeI GAWTC 3 cut(s) 347, 473, 820
PkrI GCNGC 4 cut(s) 322, 325, 339, 846
PspN4I GGNNCC 2 cut(s) 357, 418
PspPI GGNCC 2 cut(s) 380, 462
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 633, 837
RsaNI GTAC 2 cut(s) 632, 836
SaqAI TTAA 5 cut(s) 119, 609, 678, 726, 871
SatI GCNGC 4 cut(s) 321, 324, 338, 845
Sau3AI GATC 2 cut(s) 355, 550
Sau96I GGNCC 2 cut(s) 380, 462
ScaI AGTACT 2 cut(s) 633, 837
SetI ASST 6 cut(s) 129, 179, 325, 400, 722, 810
SmlI CTYRAG 2 cut(s) 28, 221
SmoI CTYRAG 2 cut(s) 28, 221
SphI GCATGC 1 cut(s) 406
Sse9I AATT 4 cut(s) 65, 197, 507, 698
SspMI CTAG 1 cut(s) 573
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 6 cut(s) 104, 210, 250, 489, 835, 840
TaiI ACGT 2 cut(s) 129, 722
TaqI TCGA 2 cut(s) 553, 599
TasI AATT 4 cut(s) 65, 197, 507, 698
TatI WGTACW 2 cut(s) 631, 835
TfiI GAWTC 3 cut(s) 347, 473, 820
Tru1I TTAA 5 cut(s) 119, 609, 678, 726, 871
Tru9I TTAA 5 cut(s) 119, 609, 678, 726, 871
TscAI CASTG 2 cut(s) 109, 624
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 4 cut(s) 320, 323, 337, 844
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 197, 284, 489, 517
TspGWI ACGGA 2 cut(s) 280, 284
TspRI CASTG 2 cut(s) 109, 624
XceI RCATGY 1 cut(s) 406
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 2 cut(s) 633, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.