Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000155

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Reverse (-)

4858 .. 8723

Gene Structure 3866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_155G00443780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGATCTGCGGCGACAAATGGAAGTCGTCGGACGATATGAAGGCGGTGTTGTCCCGTCCGTCACTCGCATCACGCTTTTCGTTTGGCGAAAGATTTCCGTGGTGGCTGCACGCAACGACCTTTTCGCCGAGAAAAATAACAACAGAAGGGGCGGCGATGGAGTCGAAGCCCCCGTTGAACAAGGATGGCATGGTTCCTTACACCTCCTTCTCTTGCATGTTTTATCCTGGACGAGCAAAAGTATTGGCAGAAGAATGGCCCATGGTGGAGTCGGCCTTGGGAGAATATGGCATGTCATGCAAACTCGATTGGGATGACAGGTTCATAACAGTGGCAACGACGGCAAGGACTAGGGTTGCAGATATTGTTTACAAGGCTAGGGACCTCCTTCATCTTCTGGCATTGACTAATGTTCCACCATCAATGGCCATACAGATACTGGATGGCAGGCTGCATTGTGACATCATCTGGACTGCCAATTGTTACGGTGGTCTTCTCTCTAAACTTTCGTTTAAGAGTAAGGGGCAATATTTTACACGGATGAAAAATATTCGGCGCAACATGGAGGGCCTTGTATCTGTATCCGGTTGCTCCCTCTTCATTAATGGATTTTCTGTCACTGCAATTAGCGCAATTCCTGAAGGACTATTGACAATCAGGGGTATTGTGACATCCTGCATTGTTAAAGGTCAGAATCCTGGAACTGCTGTCAGGTTGTTGAAATTGTTTCAAGAAAGGAATGGACAGACAGAGAATCTCGAGATGGATGCTTATGGGTTCACAACTGCTCCTGGAGCAAAACTGAGATTCTTGAAGCGATTAGGTGGGAACCCATTAGTTGAACAGAAAAATTCGGAGCTTACCCTGACTGGGGGGGATGATGTCGGGGAACTGAAGCCGTCCATTGGGAACCCGCGAGTTGAACACAAAAAATCGGAGGATGACCCGACACCAGAAGTCAATCAGACACAGTTTTCTTTATTTGGCCCTTCGTTGAACAAAGATGGAATGCTTGTGTGTGGTTCGTTCTTCCTTGATCATCGAGCGAGGGATAGGGATAGAGTGGTGACAGCTTATGAGGTTAGGGATAGGCCGTCGGCGTTGAAGACCGAGGATTGGGATAGGGTGGTGGCGGTTTTCGTGTTGGGGAAGGAGTGGCAGTTCAAGGACTGGCCTTTCAAGGACCATGTGGAGATTTTTAATAAGATTATGGGATTTTTCATGCGGTTTGAAGATGATAGTGTGGAGTCGCAAAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

47.42

Weight (kDa)

8.31

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	70 - 148	3.8e-10	Krr1 KH1 domain
CDC73_C	PF05179	355 - 418	3.9e-21	RNA pol II accessory factor, Cdc73 family, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	919
AciI	CCGC	6 cut(s)	12, 47, 155, 917, 1136, 1228
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	2 cut(s)	663, 917
AfiI	CCNNNNNNNGG	4 cut(s)	873, 874, 908, 1119
AjnI	CCWGG	3 cut(s)	229, 700, 793
AloI	GAACNNNNNNTCC	4 cut(s)	308, 340, 1148, 1180
AluBI	AGCT	2 cut(s)	862, 1076
AluI	AGCT	2 cut(s)	862, 1076
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	7 cut(s)	260, 276, 429, 571, 988, 1094, 1175
ApeKI	GCWGC	2 cut(s)	109, 454
ApoI	RAATTY	1 cut(s)	853
AseI	ATTAAT	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	561, 635
AspS9I	GGNCC	5 cut(s)	261, 385, 571, 989, 1186
AsuHPI	GGTGA	1 cut(s)	1081
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	385, 1186
BalI	TGGCCA	1 cut(s)	431
BbsI	GAAGAC	2 cut(s)	488, 1115
BbvI	GCAGC	2 cut(s)	96, 441
BccI	CCATC	6 cut(s)	154, 182, 430, 440, 760, 1001
BceAI	ACGGC	3 cut(s)	360, 886, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	3 cut(s)	231, 702, 795
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	1 cut(s)	1039
BfaI	CTAG	2 cut(s)	354, 381
BfuI	GTATCC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	4 cut(s)	13, 110, 156, 455
BlsI	GCNGC	4 cut(s)	14, 111, 157, 456
Bme1390I	CCNGG	3 cut(s)	231, 702, 795
Bme18I	GGWCC	2 cut(s)	385, 1186
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	5 cut(s)	261, 385, 571, 989, 1186
BmiI	GGNNCC	4 cut(s)	198, 386, 833, 914
BmrFI	CCNGG	3 cut(s)	231, 702, 795
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	2 cut(s)	80, 760
BmuI	ACTGGG	1 cut(s)	882
BpiI	GAAGAC	2 cut(s)	488, 1115
BpmI	CTGGAG	1 cut(s)	816
BsaJI	CCNNGG	4 cut(s)	101, 264, 279, 1113
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	4 cut(s)	775, 805, 1148, 1178
Bsc4I	CCNNNNNNNGG	4 cut(s)	873, 874, 908, 1119
Bse1I	ACTGG	3 cut(s)	447, 877, 1178
BseBI	CCWGG	3 cut(s)	231, 702, 795
BseDI	CCNNGG	4 cut(s)	101, 264, 279, 1113
BseGI	GGATG	8 cut(s)	193, 322, 451, 549, 674, 775, 886, 949
BseLI	CCNNNNNNNGG	4 cut(s)	873, 874, 908, 1119
BseMII	CTCAG	1 cut(s)	797
BseNI	ACTGG	3 cut(s)	447, 877, 1178
BseXI	GCAGC	2 cut(s)	96, 441
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	919
BshFI	GGCC	7 cut(s)	262, 278, 431, 573, 990, 1096, 1177
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	2 cut(s)	40, 398
BslI	CCNNNNNNNGG	4 cut(s)	873, 874, 908, 1119
BsmFI	GGGAC	2 cut(s)	40, 398
BsmI	GAATGC	1 cut(s)	1017
BsnI	GGCC	7 cut(s)	262, 278, 431, 573, 990, 1096, 1177
BsoBI	CYCGRG	1 cut(s)	761
Bsp143I	GATC	2 cut(s)	6, 1039
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	6 cut(s)	12, 47, 155, 917, 1136, 1228
BspANI	GGCC	7 cut(s)	262, 278, 431, 573, 990, 1096, 1177
BspCNI	CTCAG	1 cut(s)	798
BspFNI	CGCG	1 cut(s)	919
BspLI	GGNNCC	4 cut(s)	198, 386, 833, 914
BsrI	ACTGG	3 cut(s)	447, 877, 1178
BssECI	CCNNGG	4 cut(s)	101, 264, 279, 1113
BssMI	GATC	2 cut(s)	6, 1039
BssT1I	CCWWGG	2 cut(s)	264, 279
Bst2UI	CCWGG	3 cut(s)	231, 702, 795
Bst4CI	ACNGT	3 cut(s)	334, 491, 975
Bst6I	CTCTTC	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	114, 452
BstDEI	CTNAG	1 cut(s)	806
BstDSI	CCRYGG	2 cut(s)	101, 264
BstF5I	GGATG	8 cut(s)	193, 322, 451, 549, 674, 775, 886, 949
BstFNI	CGCG	1 cut(s)	919
BstHHI	GCGC	2 cut(s)	561, 635
BstKTI	GATC	2 cut(s)	9, 1042
BstMBI	GATC	2 cut(s)	6, 1039
BstMWI	GCNNNNNNNGC	4 cut(s)	300, 344, 632, 797
BstNI	CCWGG	3 cut(s)	231, 702, 795
BstNSI	RCATGY	2 cut(s)	223, 298
BstSCI	CCNGG	3 cut(s)	229, 700, 793
BstUI	CGCG	1 cut(s)	919
BstV1I	GCAGC	2 cut(s)	96, 441
BstV2I	GAAGAC	2 cut(s)	488, 1115
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	7 cut(s)	262, 278, 431, 573, 990, 1096, 1177
BtgI	CCRYGG	2 cut(s)	101, 264
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	8 cut(s)	193, 322, 451, 549, 674, 775, 886, 949
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	2 cut(s)	339, 621
Cac8I	GCNNGC	2 cut(s)	114, 452
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	2 cut(s)	561, 635
Cfr13I	GGNCC	5 cut(s)	261, 385, 571, 989, 1186
CviAII	CATG	8 cut(s)	193, 220, 265, 295, 300, 565, 1190, 1225
DdeI	CTNAG	1 cut(s)	806
DpnI	GATC	2 cut(s)	8, 1041
DpnII	GATC	2 cut(s)	6, 1039
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	264, 279
Eco47I	GGWCC	2 cut(s)	385, 1186
Eco57I	CTGAAG	2 cut(s)	663, 917
Eco88I	CYCGRG	1 cut(s)	761
EcoO109I	RGGNCCY	2 cut(s)	385, 571
EcoRII	CCWGG	3 cut(s)	229, 700, 793
EcoT14I	CCWWGG	2 cut(s)	264, 279
ErhI	CCWWGG	2 cut(s)	264, 279
FaeI	CATG	8 cut(s)	196, 223, 268, 298, 303, 568, 1193, 1228
FaqI	GGGAC	2 cut(s)	40, 398
FatI	CATG	8 cut(s)	192, 219, 264, 294, 299, 564, 1189, 1224
FauI	CCCGC	1 cut(s)	924
FbaI	TGATCA	1 cut(s)	1039
Fnu4HI	GCNGC	4 cut(s)	13, 110, 156, 455
FokI	GGATG	8 cut(s)	200, 329, 458, 556, 661, 782, 893, 956
Fsp4HI	GCNGC	4 cut(s)	13, 110, 156, 455
FspBI	CTAG	2 cut(s)	354, 381
GlaI	GCGC	2 cut(s)	560, 634
GluI	GCNGC	4 cut(s)	13, 110, 156, 455
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	7 cut(s)	262, 278, 431, 573, 990, 1096, 1177
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	2 cut(s)	561, 635
Hin1II	CATG	8 cut(s)	196, 223, 268, 298, 303, 568, 1193, 1228
Hin6I	GCGC	2 cut(s)	559, 633
HinP1I	GCGC	2 cut(s)	559, 633
HinfI	GANTC	6 cut(s)	164, 272, 697, 757, 810, 1250
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	1 cut(s)	1081
Hpy166II	GTNNAC	2 cut(s)	373, 783
Hpy188I	TCNGA	5 cut(s)	34, 696, 859, 940, 969
Hpy188III	TCNNGA	6 cut(s)	472, 641, 734, 761, 763, 814
Hpy8I	GTNNAC	2 cut(s)	373, 783
Hpy99I	CGWCG	3 cut(s)	34, 346, 1102
HpyAV	CCTTC	7 cut(s)	37, 143, 220, 401, 638, 1002, 1147
HpyCH4III	ACNGT	3 cut(s)	334, 491, 975
HpyCH4V	TGCA	7 cut(s)	112, 219, 303, 362, 457, 626, 681
HpyF10VI	GCNNNNNNNGC	4 cut(s)	300, 344, 632, 797
HpyF3I	CTNAG	1 cut(s)	806
Hsp92II	CATG	8 cut(s)	196, 223, 268, 298, 303, 568, 1193, 1228
HspAI	GCGC	2 cut(s)	559, 633
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	2 cut(s)	6, 1039
LmnI	GCTCC	4 cut(s)	599, 796, 797, 859
Lsp1109I	GCAGC	2 cut(s)	96, 441
LweI	GCATC	2 cut(s)	80, 760
MaeI	CTAG	2 cut(s)	354, 381
MaeIII	GTNAC	6 cut(s)	63, 461, 485, 619, 670, 1069
MalI	GATC	2 cut(s)	8, 1041
MboI	GATC	2 cut(s)	6, 1039
MboII	GAAGA	7 cut(s)	266, 389, 488, 592, 1024, 1120, 1247
MfeI	CAATTG	1 cut(s)	481
MflI	RGATCY	1 cut(s)	6
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	5 cut(s)	481, 627, 636, 725, 853
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	3 cut(s)	173, 281, 1259
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	8 cut(s)	217, 398, 562, 608, 934, 1044, 1075, 1108
Mox20I	TGGCCA	1 cut(s)	431
MroXI	GAANNNNTTC	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	4 cut(s)	516, 606, 687, 1203
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	3 cut(s)	231, 702, 795
MunI	CAATTG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	1017
MvaI	CCWGG	3 cut(s)	231, 702, 795
MvnI	CGCG	1 cut(s)	919
MwoI	GCNNNNNNNGC	4 cut(s)	300, 344, 632, 797
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	6, 1039
NlaIII	CATG	8 cut(s)	196, 223, 268, 298, 303, 568, 1193, 1228
NlaIV	GGNNCC	4 cut(s)	198, 386, 833, 914
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	5 cut(s)	63, 461, 619, 670, 1069
NspI	RCATGY	2 cut(s)	223, 298
PaeR7I	CTCGAG	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	1 cut(s)	1017
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	697, 757, 810
PfoI	TCCNGGA	3 cut(s)	229, 700, 793
PkrI	GCNGC	4 cut(s)	14, 111, 157, 456
PleI	GAGTC	3 cut(s)	172, 280, 1258
PpsI	GAGTC	3 cut(s)	172, 280, 1258
PpuMI	RGGWCCY	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	229, 700, 793
PspGI	CCWGG	3 cut(s)	229, 700, 793
PspN4I	GGNNCC	4 cut(s)	198, 386, 833, 914
PspPI	GGNCC	5 cut(s)	261, 385, 571, 989, 1186
PspPPI	RGGWCCY	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	516, 606, 687, 1203
SatI	GCNGC	4 cut(s)	13, 110, 156, 455
Sau3AI	GATC	2 cut(s)	6, 1039
Sau96I	GGNCC	5 cut(s)	261, 385, 571, 989, 1186
SchI	GAGTC	3 cut(s)	173, 281, 1259
ScrFI	CCNGG	3 cut(s)	231, 702, 795
SfaNI	GCATC	2 cut(s)	80, 760
Sfr274I	CTCGAG	1 cut(s)	761
SinI	GGWCC	2 cut(s)	385, 1186
SlaI	CTCGAG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	5 cut(s)	481, 627, 636, 725, 853
SsiI	CCGC	6 cut(s)	12, 47, 155, 917, 1136, 1228
SspI	AATATT	2 cut(s)	533, 553
SspMI	CTAG	2 cut(s)	354, 381
StyD4I	CCNGG	3 cut(s)	229, 700, 793
StyI	CCWWGG	2 cut(s)	264, 279
TaaI	ACNGT	3 cut(s)	334, 491, 975
TaqI	TCGA	4 cut(s)	167, 309, 762, 1045
TaqII	GACCGA	1 cut(s)	1127
TasI	AATT	5 cut(s)	481, 627, 636, 725, 853
TauI	GCSGC	2 cut(s)	15, 158
TfiI	GAWTC	3 cut(s)	697, 757, 810
Tru1I	TTAA	4 cut(s)	516, 606, 687, 1203
Tru9I	TTAA	4 cut(s)	516, 606, 687, 1203
TscAI	CASTG	2 cut(s)	339, 628
TseFI	GTSAC	5 cut(s)	63, 461, 619, 670, 1069
TseI	GCWGC	2 cut(s)	109, 454
Tsp45I	GTSAC	5 cut(s)	63, 461, 619, 670, 1069
TspDTI	ATGAA	6 cut(s)	56, 316, 383, 560, 592, 1213
TspGWI	ACGGA	3 cut(s)	51, 90, 556
TspRI	CASTG	2 cut(s)	339, 628
VpaK11BI	GGWCC	2 cut(s)	385, 1186
VspI	ATTAAT	1 cut(s)	606
XapI	RAATTY	1 cut(s)	853
XceI	RCATGY	2 cut(s)	223, 298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	354, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.