Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

9255594 .. 9265895

Gene Structure 10302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCCGAGCCAACAGCAGCTGCGATGGAGGGGCAGCATGGAGAATCGTCCGATCCATTGGACAAAGCCCTGTTCGGCCCTTCGTTGAACAAAGCTGGCATGCTCGATGAGGGTTTCATGACATTCTCAACAACTAAGGATCGAGATACTATTTACAAGGCCAGAGATGTTCTTGAACTTCTGTCATCGACTTCTGTTAAGCCCTCACTGGCAATAGAAGTACTGAATGGCAGGCTGAAGCGTGATATCATCAAGACTGGGTATTTTAATGGTGGGATTGGTTCAGAATTGAAGATTGATAAGGAGACGTTCGTTAAGCAGACTGGACTTTTCAAAGCCTCTTTACAGGGAAACACTGTTGCTGCTCTGGCGACTGAAAATGGACGATTAAGCTTGGTCAGGGAAGTGGTTACACGCTGCATTGCTAGCAATGAGGATCCAGCAAGTATGATCCAGGAGTTTAAAAGAACAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.29

Weight (kDa)

6.61

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	47, 147, 431, 444, 445
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	88, 176, 292, 334
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	20, 95, 393
AluI	AGCT	3 cut(s)	20, 95, 393
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	5 cut(s)	47, 147, 431, 444, 445
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	2 cut(s)	76, 159
ApeKI	GCWGC	5 cut(s)	17, 20, 34, 362, 417
AspS9I	GGNCC	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	436
BbvI	GCAGC	5 cut(s)	7, 29, 46, 349, 404
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	426
BisI	GCNGC	5 cut(s)	18, 21, 35, 363, 418
BlsI	GCNGC	5 cut(s)	19, 22, 36, 364, 419
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	455
BmrI	ACTGGG	1 cut(s)	267
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	267
Bse1I	ACTGG	3 cut(s)	213, 262, 328
Bse3DI	GCAATG	2 cut(s)	420, 436
BseBI	CCWGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	420, 436
BseNI	ACTGG	3 cut(s)	213, 262, 328
BseXI	GCAGC	5 cut(s)	7, 29, 46, 349, 404
BshFI	GGCC	2 cut(s)	78, 161
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	78, 161
Bsp143I	GATC	4 cut(s)	52, 139, 436, 450
BspANI	GGCC	2 cut(s)	78, 161
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	438
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	5 cut(s)	47, 147, 431, 444, 445
BsrDI	GCAATG	2 cut(s)	420, 436
BsrI	ACTGG	3 cut(s)	213, 262, 328
BssMI	GATC	4 cut(s)	52, 139, 436, 450
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	358
BstC8I	GCNNGC	4 cut(s)	97, 101, 233, 427
BstDEI	CTNAG	1 cut(s)	135
BstKTI	GATC	4 cut(s)	55, 142, 439, 453
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	52, 139, 436, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 426
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	453
BstV1I	GCAGC	5 cut(s)	7, 29, 46, 349, 404
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	78, 161
BtgZI	GCGATG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	206, 354
Cac8I	GCNNGC	4 cut(s)	97, 101, 233, 427
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	38, 100, 118
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	4 cut(s)	54, 141, 438, 452
DpnII	GATC	4 cut(s)	52, 139, 436, 450
DraI	TTTAAA	1 cut(s)	463
Eco32I	GATATC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	453
EcoRV	GATATC	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	3 cut(s)	41, 103, 121
FaiI	YATR	4 cut(s)	39, 101, 119, 449
FatI	CATG	3 cut(s)	37, 99, 117
Fnu4HI	GCNGC	5 cut(s)	18, 21, 35, 363, 418
Fsp4HI	GCNGC	5 cut(s)	18, 21, 35, 363, 418
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	5 cut(s)	18, 21, 35, 363, 418
HaeIII	GGCC	2 cut(s)	78, 161
Hin1II	CATG	3 cut(s)	41, 103, 121
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	7, 52, 286
Hpy188III	TCNNGA	4 cut(s)	118, 143, 173, 253
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 426
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	41, 103, 121
Kzo9I	GATC	4 cut(s)	52, 139, 436, 450
Lsp1109I	GCAGC	5 cut(s)	7, 29, 46, 349, 404
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	54, 141, 438, 452
MboI	GATC	4 cut(s)	52, 139, 436, 450
MboII	GAAGA	1 cut(s)	304
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	1 cut(s)	287
MnlI	CCTC	5 cut(s)	22, 103, 214, 349, 427
MseI	TTAA	5 cut(s)	198, 267, 315, 389, 462
MspA1I	CMGCKG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	368, 426
NdeII	GATC	4 cut(s)	52, 139, 436, 450
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	3 cut(s)	41, 103, 121
NlaIV	GGNNCC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	103
PaeI	GCATGC	1 cut(s)	103
PagI	TCATGA	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	5 cut(s)	19, 22, 36, 364, 419
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	5 cut(s)	198, 267, 315, 389, 462
SatI	GCNGC	5 cut(s)	18, 21, 35, 363, 418
Sau3AI	GATC	4 cut(s)	52, 139, 436, 450
Sau96I	GGNCC	1 cut(s)	77
ScaI	AGTACT	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	4 cut(s)	22, 97, 311, 395
SphI	GCATGC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	287
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	105, 142, 188
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	5 cut(s)	198, 267, 315, 389, 462
Tru9I	TTAA	5 cut(s)	198, 267, 315, 389, 462
TscAI	CASTG	2 cut(s)	213, 361
TseI	GCWGC	5 cut(s)	17, 20, 34, 362, 417
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	213, 361
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.