Rh7CG397100

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003458
Physical Location & Seq
Reverse (-)
50630898 .. 50640237
9340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG397100.1

Sequence Viewer

Length: 372 bp
ATGGACATGGTCATATCCCCCTGTTCGTTCTCCGACGACATCGTTCCGGGCACTAAGGCTGAGCGTTCCATTACATTCTCAACCACCTCAAGGACTAGGGGTCCAGATATTGTTAACAAGGCTAGGGATCTTCTTGAGCCTTTAACATTGACTGCGGTTCCACCATTTAAGGCCATACAAATACTGGATGGTTTGCCATATGACATCATCCAGACCGGGTATCACAATGGTGGGTTTCGCTCAAGACTACCACTTGAGGAGCAGGAGAAATATCTTGGACGGCTGAAAAGAATTGAACAGTCCTTACACTCCTATCAGCGCACACATAAGGCAAGGTCTGGAGTTACACAAGTCTCTGTTTCTGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.8

Weight (kDa)

7.9

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 296
AhdI GACNNNNNGTC 1 cut(s) 99
AleI CACNNNNGTG 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 2 cut(s) 48, 217
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 53
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 296
BcnI CCSGG 2 cut(s) 48, 217
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 96, 123
BlpI GCTNAGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 48, 217
Bme18I GGWCC 1 cut(s) 101
BmeRI GACNNNNNGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 102, 159
BmrFI CCNGG 2 cut(s) 48, 217
BpmI CTGGAG 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 60
BpuEI CTTGAG 4 cut(s) 73, 155, 226, 275
BpuMI CCSGG 2 cut(s) 48, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 189
BseGI GGATG 2 cut(s) 193, 207
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 51, 354
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 53
BshFI GGCC 1 cut(s) 173
BsiSI CCGG 2 cut(s) 47, 216
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 358
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 127
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 52, 355
BspLI GGNNCC 2 cut(s) 102, 159
BspPI GGATC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 189
BssMI GATC 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 300
BstDEI CTNAG 3 cut(s) 54, 60, 363
BstF5I GGATG 2 cut(s) 193, 207
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 46, 215
BstSLI GKGCMC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 2 cut(s) 193, 207
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 101
CviAII CATG 1 cut(s) 7
CviJI RGCY 5 cut(s) 59, 122, 139, 173, 283
CviKI_1 RGCY 5 cut(s) 59, 122, 139, 173, 283
DdeI CTNAG 3 cut(s) 54, 60, 363
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
DriI GACNNNNNGTC 1 cut(s) 99
Eam1105I GACNNNNNGTC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 101
FaeI CATG 1 cut(s) 10
FaiI YATR 6 cut(s) 8, 14, 176, 199, 201, 327
FatI CATG 1 cut(s) 6
FauNDI CATATG 1 cut(s) 199
FokI GGATG 2 cut(s) 194, 200
FspBI CTAG 2 cut(s) 96, 123
GlaI GCGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 173
HapII CCGG 2 cut(s) 47, 216
HhaI GCGC 1 cut(s) 321
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 47, 216
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 34, 364
Hpy188III TCNNGA 5 cut(s) 104, 134, 211, 243, 339
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 300
HpyF3I CTNAG 3 cut(s) 54, 60, 363
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 8 cut(s) 34, 60, 117, 170, 224, 229, 248, 324
MaeI CTAG 2 cut(s) 96, 123
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 97, 250, 358
MseI TTAA 3 cut(s) 114, 143, 168
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 2 cut(s) 47, 216
MspR9I CCNGG 2 cut(s) 48, 217
NciI CCSGG 2 cut(s) 48, 217
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 102, 159
OliI CACNNNNGTG 1 cut(s) 228
PflFI GACNNNGTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 102, 159
PspPI GGNCC 1 cut(s) 101
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PsuI RGATCY 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 3 cut(s) 114, 143, 168
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 48, 217
SduI GDGCHC 1 cut(s) 53
SetI ASST 2 cut(s) 89, 338
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 4 cut(s) 88, 134, 241, 254
SmoI CTYRAG 4 cut(s) 88, 134, 241, 254
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 96, 123
StyD4I CCNGG 2 cut(s) 46, 215
TaaI ACNGT 1 cut(s) 300
TasI AATT 1 cut(s) 291
Tru1I TTAA 3 cut(s) 114, 143, 168
Tru9I TTAA 3 cut(s) 114, 143, 168
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 2 cut(s) 96, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.