Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

9250827 .. 9255575

Gene Structure 4749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG120400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCAGCTGAGAAGTGGTAAATCTCTTGATGAGTTGACGGCCATACAAATGCTGGATGGTCTGCAATATGACATCATCCGGACCGGGTATCACAATGGTGGGTTTCGGTCAAGACTACCACTTGACGAGCAGGAGAAATATCTTGGACGGCTGAAAAGAATTGAACACTCCTTACAGGAACTTGCAAACCGGTCACAGTGTGATGTATTTCTTAATGTAAGGAATATTGTTTCGTTTCACATGATTCGTAGTGATATTGTGTATGTCTTTGGGTCTGACCACGTGCAGACGAATTTGTCAGAGACGTTGTGGAAGCCTGCAACTCTGTTCAGGTTGATGAACTTTAGTCGTCAATTGGGTGGACAGTCGGACAATCTTGAGATGGATGTATTAGGGTTTGAAACAGTAACGAAAAGAAAACGGACGGAGGAGAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

17.04

Weight (kDa)

8.79

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	292
AcvI	CACGTG	1 cut(s)	283
AdeI	CACNNNGTG	1 cut(s)	200
AgeI	ACCGGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	164, 401
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	292
AsiGI	ACCGGT	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	81
BbrPI	CACGTG	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	50, 376
BceAI	ACGGC	2 cut(s)	54, 164
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	296
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	283
BsaWI	WCCGGW	2 cut(s)	78, 189
Bse118I	RCCGGY	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	78
BseGI	GGATG	3 cut(s)	61, 75, 391
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	41
BshTI	ACCGGT	1 cut(s)	189
BsiSI	CCGG	3 cut(s)	79, 84, 190
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	41
Bsp13I	TCCGGA	1 cut(s)	78
BspANI	GGCC	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	198, 366, 406
Bst6I	CTCTTC	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	61, 75, 391
BstMAI	GTCTC	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	61, 75, 391
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	81
CpoI	CGGWCCG	1 cut(s)	81
CspAI	ACCGGT	1 cut(s)	189
CspI	CGGWCCG	1 cut(s)	81
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	4 cut(s)	7, 41, 151, 316
CviKI_1	RGCY	4 cut(s)	7, 41, 151, 316
DdeI	CTNAG	1 cut(s)	8
DraIII	CACNNNGTG	1 cut(s)	200
DrdI	GACNNNNNNGTC	1 cut(s)	295
DseDI	GACNNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	81
Eco72I	CACGTG	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	1 cut(s)	244
FaiI	YATR	4 cut(s)	44, 69, 242, 264
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	62, 68, 398
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	3 cut(s)	79, 84, 190
Hin1II	CATG	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	3 cut(s)	79, 84, 190
Hpy166II	GTNNAC	2 cut(s)	36, 362
Hpy188I	TCNGA	3 cut(s)	277, 301, 370
Hpy188III	TCNNGA	4 cut(s)	26, 79, 111, 377
Hpy8I	GTNNAC	2 cut(s)	36, 362
HpyCH4III	ACNGT	3 cut(s)	198, 366, 406
HpyCH4IV	ACGT	2 cut(s)	282, 305
HpyCH4V	TGCA	5 cut(s)	4, 64, 185, 286, 320
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	282, 305
Hsp92II	CATG	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	78
LpnPI	CCDG	8 cut(s)	38, 92, 97, 116, 161, 203, 316, 330
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	2 cut(s)	282, 305
MaeIII	GTNAC	2 cut(s)	192, 406
MfeI	CAATTG	1 cut(s)	353
MluCI	AATT	3 cut(s)	159, 292, 353
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	78
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	47, 96
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	3 cut(s)	79, 84, 190
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	353
NciI	CCSGG	1 cut(s)	85
NlaIII	CATG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	6
PmaCI	CACGTG	1 cut(s)	283
PmlI	CACGTG	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	283
PspCI	CACGTG	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	81
PsrI	GAACNNNNNNTAC	2 cut(s)	156, 188
PvuII	CAGCTG	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	47, 96
Rsr2I	CGGWCCG	1 cut(s)	81
RsrII	CGGWCCG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	4 cut(s)	9, 285, 308, 335
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	47, 96
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	159, 292, 353
SspI	AATATT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	198, 366, 406
TaiI	ACGT	2 cut(s)	285, 308
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	3 cut(s)	159, 292, 353
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	2 cut(s)	436, 440
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.