Rw7G010110

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003458
Physical Location & Seq
Forward (+)
9371641 .. 9374948
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010110.1

Sequence Viewer

Length: 1041 bp
ATGGTGGAATCTTCTTTAGAAAAGTATTGCATTTCGTGCACACTTGATCAGGCTGAGCGTTCCATTACATTCTCAACAACCTCAAGGACTAGGGGTCAATTTCTCCTTCTGTTCCAGCAACAAAGTATAAATGCCATACAAATACTGGATGGTCTGCAATACGACATCATCCGGACTGGTTATGATGTGGGGCATTTAGTTTTAACATTTTCTGGAATTAATGTGGAGAAATATCTTGGACGGCAGAACAGAATTGAACACTCCTTACAGGAACTTGCAAACCAGTCACAGTGTGATGTATTTCTTAATGTAAGGAATATTGTTTTGTTTCACATGATTCGTAGTGATATTGTGTATGTCTTTGGGGACGTTGTGGAAGCCTGCATTGTAAGAAATGTGAAGCCTGCAACTCTGTTCAGGTTGATGAACTTTAGTCGTCAATTGGGTGGACAGTCGGACAATCTTGAGATGGATGTATTAGGGTTTGAAACAGTAACGAAAAGAAAACGGATGGAGGAGAAGAGAAAGAATGATGTTCATGTTGTCATGTCCGAGCCAACAGCAGCTGCGATGGAGGGGCAGCATGGAGAATCGTCGGATCCATTGGACAAAGCCCTGTTCGGCCCTTCGTTGAACAAAGCTGGCATGCTCGTCTGTGGTGCCTTCTTCTCTGAAAAGCGAGCCAAAGTATTGGAAGAAGAATGGCCCATTGTGGAATCATCCTTGGAACAGTATGGCATTTCATGCACAATTTATCTGGATGAGGGTTTCATGACATTCTCAACAACTAAGGATCGAGATACTATTTACAAGGCTAGAGATGTTCTTGAACTTCTGTCATCGACTTCTGTTAAGCCCTCACTGGAGACGTTCGTTAAGCAGACTGGACTTTTCAAAGCCTCTTTACAGAGAAACACTGTTGCTGCTCTGGCGACTGAAAATGGACGATTAAGCTTGGTCAGGGAAGTGGTTACACGCTGCATTGCTAGCAATGAGGATCCAGCAAGTATGATCCAGGAGTTTAAAAGAACAAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

39.03

Weight (kDa)

5.87

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 222 - 281 2.2e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 659
AccIII TCCGGA 1 cut(s) 171
AclWI GGATC 6 cut(s) 593, 606, 801, 992, 1005, 1006
AdeI CACNNNGTG 1 cut(s) 293
AgsI TTSAA 5 cut(s) 257, 488, 634, 830, 895
AhdI GACNNNNNGTC 1 cut(s) 93
AjnI CCWGG 1 cut(s) 1014
AluBI AGCT 3 cut(s) 566, 641, 954
AluI AGCT 3 cut(s) 566, 641, 954
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 860
Alw44I GTGCAC 1 cut(s) 37
AlwI GGATC 6 cut(s) 593, 606, 801, 992, 1005, 1006
AlwNI CAGNNNCTG 1 cut(s) 566
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 2 cut(s) 622, 704
ApaLI GTGCAC 1 cut(s) 37
ApeKI GCWGC 5 cut(s) 563, 566, 580, 923, 978
AseI ATTAAT 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 623, 705
AsuNHI GCTAGC 1 cut(s) 986
BaeGI GKGCMC 1 cut(s) 41
BamHI GGATCC 2 cut(s) 598, 997
BanI GGYRCC 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 5 cut(s) 553, 575, 592, 910, 965
BccI CCATC 4 cut(s) 143, 463, 505, 565
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 1016
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 860
BfaI CTAG 3 cut(s) 90, 816, 987
BisI GCNGC 5 cut(s) 564, 567, 581, 924, 979
BlpI GCTNAGC 1 cut(s) 54
BlsI GCNGC 5 cut(s) 565, 568, 582, 925, 980
Bme1390I CCNGG 1 cut(s) 1016
BmeRI GACNNNNNGTC 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 623, 705
BmiI GGNNCC 3 cut(s) 600, 661, 999
BmrFI CCNGG 1 cut(s) 1016
BmtI GCTAGC 1 cut(s) 990
BpmI CTGGAG 1 cut(s) 884
Bpu1102I GCTNAGC 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 67, 485
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 171
Bse1I ACTGG 5 cut(s) 150, 181, 283, 867, 889
Bse3DI GCAATG 2 cut(s) 981, 997
BseAI TCCGGA 1 cut(s) 171
BseBI CCWGG 1 cut(s) 1016
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 6 cut(s) 154, 168, 478, 516, 719, 766
BseMI GCAATG 2 cut(s) 981, 997
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 5 cut(s) 150, 181, 283, 867, 889
BseRI GAGGAG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 5 cut(s) 553, 575, 592, 910, 965
BshFI GGCC 2 cut(s) 624, 706
BshNI GGYRCC 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 860
BsmBI CGTCTC 1 cut(s) 860
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 2 cut(s) 624, 706
Bsp1286I GDGCHC 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 5 cut(s) 46, 598, 793, 997, 1011
Bsp1720I GCTNAGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 624, 706
BspCNI CTCAG 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 171
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 3 cut(s) 600, 661, 999
BspOI GCTAGC 1 cut(s) 990
BspPI GGATC 6 cut(s) 593, 606, 801, 992, 1005, 1006
BspT107I GGYRCC 1 cut(s) 659
BsrDI GCAATG 2 cut(s) 981, 997
BsrI ACTGG 5 cut(s) 150, 181, 283, 867, 889
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 5 cut(s) 46, 598, 793, 997, 1011
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 1016
Bst4CI ACNGT 5 cut(s) 291, 453, 493, 732, 919
Bst6I CTCTTC 1 cut(s) 515
BstAPI GCANNNNNTGC 2 cut(s) 36, 744
BstC8I GCNNGC 6 cut(s) 382, 405, 643, 647, 681, 988
BstDEI CTNAG 2 cut(s) 54, 789
BstF5I GGATG 6 cut(s) 154, 168, 478, 516, 719, 766
BstKTI GATC 5 cut(s) 49, 601, 796, 1000, 1014
BstMAI GTCTC 1 cut(s) 860
BstMBI GATC 5 cut(s) 46, 598, 793, 997, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 36, 744, 929, 987
BstNI CCWGG 1 cut(s) 1016
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 1014
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 5 cut(s) 553, 575, 592, 910, 965
BstX2I RGATCY 2 cut(s) 598, 997
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 598, 997
BsuRI GGCC 2 cut(s) 624, 706
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 6 cut(s) 154, 168, 478, 516, 719, 766
BtsIMutI CAGTG 3 cut(s) 296, 860, 915
Cac8I GCNNGC 6 cut(s) 382, 405, 643, 647, 681, 988
CaiI CAGNNNCTG 1 cut(s) 566
CciI TCATGA 1 cut(s) 771
Cfr13I GGNCC 2 cut(s) 623, 705
CviAII CATG 7 cut(s) 334, 539, 547, 584, 646, 744, 772
DdeI CTNAG 2 cut(s) 54, 789
DpnI GATC 5 cut(s) 48, 600, 795, 999, 1013
DpnII GATC 5 cut(s) 46, 598, 793, 997, 1011
DraI TTTAAA 1 cut(s) 1024
DraIII CACNNNGTG 1 cut(s) 293
DriI GACNNNNNGTC 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 515
Eam1105I GACNNNNNGTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 1014
EcoT14I CCWWGG 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 723
Esp3I CGTCTC 1 cut(s) 860
FaeI CATG 7 cut(s) 337, 542, 550, 587, 649, 747, 775
FaqI GGGAC 1 cut(s) 380
FatI CATG 7 cut(s) 333, 538, 546, 583, 645, 743, 771
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 564, 567, 581, 924, 979
FokI GGATG 6 cut(s) 155, 161, 485, 523, 706, 773
Fsp4HI GCNGC 5 cut(s) 564, 567, 581, 924, 979
FspBI CTAG 3 cut(s) 90, 816, 987
GluI GCNGC 5 cut(s) 564, 567, 581, 924, 979
GsuI CTGGAG 1 cut(s) 884
HaeIII GGCC 2 cut(s) 624, 706
HapII CCGG 1 cut(s) 172
Hin1II CATG 7 cut(s) 337, 542, 550, 587, 649, 747, 775
HindIII AAGCTT 1 cut(s) 952
HinfI GANTC 4 cut(s) 8, 337, 590, 716
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 39, 449
Hpy188I TCNGA 4 cut(s) 457, 553, 598, 673
Hpy188III TCNNGA 7 cut(s) 172, 213, 464, 758, 772, 797, 827
Hpy8I GTNNAC 2 cut(s) 39, 449
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 3 cut(s) 116, 636, 673
HpyCH4III ACNGT 5 cut(s) 291, 453, 493, 732, 919
HpyCH4IV ACGT 2 cut(s) 369, 869
HpyCH4V TGCA 8 cut(s) 30, 39, 157, 278, 384, 407, 747, 981
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 744, 929, 987
HpyF3I CTNAG 2 cut(s) 54, 789
HpySE526I ACGT 2 cut(s) 369, 869
Hsp92II CATG 7 cut(s) 337, 542, 550, 587, 649, 747, 775
Kpn2I TCCGGA 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 5 cut(s) 46, 598, 793, 997, 1011
Lsp1109I GCAGC 5 cut(s) 553, 575, 592, 910, 965
MaeI CTAG 3 cut(s) 90, 816, 987
MaeII ACGT 2 cut(s) 369, 869
MaeIII GTNAC 3 cut(s) 285, 493, 970
MalI GATC 5 cut(s) 48, 600, 795, 999, 1013
MboI GATC 5 cut(s) 46, 598, 793, 997, 1011
MboII GAAGA 5 cut(s) 3, 532, 658, 707, 710
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 2 cut(s) 598, 997
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 5 cut(s) 98, 216, 252, 440, 750
MmeI TCCRAC 2 cut(s) 435, 576
MnlI CCTC 7 cut(s) 91, 508, 568, 757, 868, 910, 988
MroI TCCGGA 1 cut(s) 171
MseI TTAA 7 cut(s) 203, 219, 306, 852, 876, 950, 1023
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 1016
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 1016
MwoI GCNNNNNNNGC 4 cut(s) 36, 744, 929, 987
NdeII GATC 5 cut(s) 46, 598, 793, 997, 1011
NheI GCTAGC 1 cut(s) 986
NlaIII CATG 7 cut(s) 337, 542, 550, 587, 649, 747, 775
NlaIV GGNNCC 3 cut(s) 600, 661, 999
NmuCI GTSAC 1 cut(s) 285
NspI RCATGY 1 cut(s) 649
PaeI GCATGC 1 cut(s) 649
PagI TCATGA 1 cut(s) 771
PfeI GAWTC 4 cut(s) 8, 337, 590, 716
PfoI TCCNGGA 1 cut(s) 1014
PkrI GCNGC 5 cut(s) 565, 568, 582, 925, 980
PshBI ATTAAT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 1014
PspGI CCWGG 1 cut(s) 1014
PspN4I GGNNCC 3 cut(s) 600, 661, 999
PspPI GGNCC 2 cut(s) 623, 705
PsrI GAACNNNNNNTAC 2 cut(s) 249, 281
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 2 cut(s) 598, 997
PvuII CAGCTG 1 cut(s) 566
SaqAI TTAA 7 cut(s) 203, 219, 306, 852, 876, 950, 1023
SatI GCNGC 5 cut(s) 564, 567, 581, 924, 979
Sau3AI GATC 5 cut(s) 46, 598, 793, 997, 1011
Sau96I GGNCC 2 cut(s) 623, 705
ScrFI CCNGG 1 cut(s) 1016
SduI GDGCHC 1 cut(s) 41
SetI ASST 7 cut(s) 83, 372, 422, 568, 643, 872, 956
SmlI CTYRAG 2 cut(s) 82, 464
SmoI CTYRAG 2 cut(s) 82, 464
SphI GCATGC 1 cut(s) 649
Sse9I AATT 5 cut(s) 98, 216, 252, 440, 750
SspI AATATT 1 cut(s) 319
SspMI CTAG 3 cut(s) 90, 816, 987
StyD4I CCNGG 1 cut(s) 1014
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 5 cut(s) 291, 453, 493, 732, 919
TaiI ACGT 2 cut(s) 372, 872
TaqI TCGA 2 cut(s) 796, 842
TasI AATT 5 cut(s) 98, 216, 252, 440, 750
TfiI GAWTC 4 cut(s) 8, 337, 590, 716
Tru1I TTAA 7 cut(s) 203, 219, 306, 852, 876, 950, 1023
Tru9I TTAA 7 cut(s) 203, 219, 306, 852, 876, 950, 1023
TscAI CASTG 3 cut(s) 296, 867, 922
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 5 cut(s) 563, 566, 580, 923, 978
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 4 cut(s) 440, 527, 732, 760
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 3 cut(s) 296, 867, 922
VneI GTGCAC 1 cut(s) 37
VspI ATTAAT 1 cut(s) 219
XceI RCATGY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XspI CTAG 3 cut(s) 90, 816, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.