Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026930.1

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Reverse (-)

13386 .. 16135

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026930.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggatgcttatgggttcaaaactgctcctggagcaaaactgagattcttgaagcgattaggtgggaacccattagttgaacagaaaaattcggagcttaccctgactaggggggatgatgtcggggaactgaagccatccattgggaacccgcgagttggatacaaaaaatcggaggatgacccgacaccagaagtcaatcagacagagttttctttatttggcccttcgttgaacaaagatggaatgcttgtgtgtggttcgttcttccttgatcatcgagaagccgttctagaagcttggccacagttgaagtcgcttttagaagattatggcatttcatgtacaatgtatctggctgagcgtttcatgacattatcaacaaccagcgggactgaagatccagatattatttacaaggctagggatgttcttgaacttttgtcattaactcgtgttccaccatcaatggtaatgaaagtactgaatgagaatctgcaatatgacatcatcaagactgcgtatcgtaatggtggtttttgctcacaatataagattgacaggggatgcgctgttactgctatgggttttaagcgtcaaggattaaagttggtcaggattggcgtgaaagagtgccttgttaacaatgtgagacctaaaactatgcttcggaagatgaagttgacccttgaaaggatgaaaatgaaagaggaaattactgccggagaatttcctcctgtggaatctgctgggaacatgcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.49

Weight (kDa)

8.69

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccII	CGCG	1 cut(s)	154
AciI	CCGC	2 cut(s)	152, 390
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	88, 728
AcuI	CTGAAG	2 cut(s)	152, 417
AfaI	GTAC	2 cut(s)	346, 483
AfiI	CCNNNNNNNGG	5 cut(s)	108, 109, 143, 158, 693
AgsI	TTSAA	7 cut(s)	19, 52, 80, 235, 313, 437, 692
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	97, 299
AluI	AGCT	2 cut(s)	97, 299
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	2 cut(s)	223, 302
ApoI	RAATTY	2 cut(s)	88, 728
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	304
BauI	CACGAG	1 cut(s)	453
BccI	CCATC	3 cut(s)	145, 236, 472
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	3 cut(s)	108, 293, 423
BfuI	GTATCC	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	360
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	68, 149
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 109, 143, 158, 693
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	7 cut(s)	10, 121, 137, 184, 433, 572, 702
BseLI	CCNNNNNNNGG	5 cut(s)	108, 109, 143, 158, 693
BseMII	CTCAG	2 cut(s)	32, 351
BseYI	CCCAGC	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	225, 304
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	5 cut(s)	108, 109, 143, 158, 693
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	225, 304
Bso31I	GGTCTC	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	274, 400
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	2 cut(s)	152, 390
BspANI	GGCC	2 cut(s)	225, 304
BspCNI	CTCAG	2 cut(s)	33, 352
BspFNI	CGCG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	68, 149
BspPI	GGATC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	646
BsrGI	TGTACA	1 cut(s)	344
BssMI	GATC	2 cut(s)	274, 400
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	41, 360
BstF5I	GGATG	7 cut(s)	10, 121, 137, 184, 433, 572, 702
BstFNI	CGCG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	2 cut(s)	277, 403
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	2 cut(s)	274, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 578
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	225, 304
BtsCI	GGATG	7 cut(s)	10, 121, 137, 184, 433, 572, 702
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	345, 482
CviAII	CATG	3 cut(s)	342, 370, 757
CviJI	RGCY	8 cut(s)	97, 136, 225, 287, 299, 304, 359, 422
CviKI_1	RGCY	8 cut(s)	97, 136, 225, 287, 299, 304, 359, 422
CviQI	GTAC	2 cut(s)	345, 482
DdeI	CTNAG	2 cut(s)	41, 360
DpnI	GATC	2 cut(s)	276, 402
DpnII	GATC	2 cut(s)	274, 400
EaeI	YGGCCR	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	152, 417
EcoRII	CCWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	762
FaeI	CATG	3 cut(s)	345, 373, 760
FaiI	YATR	9 cut(s)	12, 333, 343, 371, 504, 552, 584, 665, 758
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	341, 369, 756
FauI	CCCGC	2 cut(s)	159, 383
FbaI	TGATCA	1 cut(s)	274
FokI	GGATG	7 cut(s)	17, 124, 128, 191, 440, 579, 709
FspBI	CTAG	3 cut(s)	108, 293, 423
GlaI	GCGC	1 cut(s)	571
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	225, 304
HapII	CCGG	1 cut(s)	723
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	1 cut(s)	572
Hin1II	CATG	3 cut(s)	345, 373, 760
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HincII	GTYRAC	2 cut(s)	643, 684
HindII	GTYRAC	2 cut(s)	643, 684
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	3 cut(s)	45, 493, 743
HpaI	GTTAAC	1 cut(s)	643
HpaII	CCGG	1 cut(s)	723
Hpy166II	GTNNAC	2 cut(s)	643, 684
Hpy188I	TCNGA	4 cut(s)	94, 175, 204, 672
Hpy188III	TCNNGA	8 cut(s)	49, 281, 293, 370, 404, 434, 514, 616
Hpy8I	GTNNAC	2 cut(s)	643, 684
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	499, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 578
HpyF3I	CTNAG	2 cut(s)	41, 360
Hsp92II	CATG	3 cut(s)	345, 373, 760
HspAI	GCGC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	274, 400
LmnI	GCTCC	3 cut(s)	31, 32, 94
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	3 cut(s)	108, 293, 423
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	2 cut(s)	276, 402
MboI	GATC	2 cut(s)	274, 400
MboII	GAAGA	4 cut(s)	259, 338, 410, 685
MflI	RGATCY	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	3 cut(s)	88, 714, 728
MluNI	TGGCCA	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	169, 703, 744
Mox20I	TGGCCA	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	5 cut(s)	449, 591, 605, 642, 763
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	32, 578
NdeII	GATC	2 cut(s)	274, 400
NlaIII	CATG	3 cut(s)	345, 373, 760
NlaIV	GGNNCC	2 cut(s)	68, 149
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	1 cut(s)	760
PagI	TCATGA	1 cut(s)	369
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	45, 493, 743
PflMI	CCANNNNNTGG	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	68, 149
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	2 cut(s)	346, 483
RsaNI	GTAC	2 cut(s)	345, 482
SaqAI	TTAA	5 cut(s)	449, 591, 605, 642, 763
Sau3AI	GATC	2 cut(s)	274, 400
Sau96I	GGNCC	1 cut(s)	224
ScaI	AGTACT	1 cut(s)	483
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	4 cut(s)	64, 99, 301, 658
SfaNI	GCATC	1 cut(s)	557
Sse9I	AATT	3 cut(s)	88, 714, 728
SsiI	CCGC	2 cut(s)	152, 390
SspMI	CTAG	3 cut(s)	108, 293, 423
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	88, 714, 728
TatI	WGTACW	2 cut(s)	344, 481
TfiI	GAWTC	3 cut(s)	45, 493, 743
Tru1I	TTAA	5 cut(s)	449, 591, 605, 642, 763
Tru9I	TTAA	5 cut(s)	449, 591, 605, 642, 763
TspDTI	ATGAA	6 cut(s)	330, 358, 491, 692, 713, 719
Van91I	CCANNNNNTGG	1 cut(s)	143
XapI	RAATTY	2 cut(s)	88, 728
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	760
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	3 cut(s)	108, 293, 423
ZrmI	AGTACT	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.